Rh6DG383400

receptor-like protein kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0019112
Physical Location & Seq
Reverse (-)
57660960 .. 57662721
1762 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG383400.1

Sequence Viewer

Length: 465 bp
ATGCATCCACTTCAAAATTTGAAGAGGAACTTAAAGTTGCTTCAAGGTGGTTTTGGTTGTGTGTTCAAGGGGTGGATAGAAGAAAATGGAACTGCTCCAGTCAAACCTGGCACAGGACTTACTGTTGTGGTTAAAACTCTTAATCATGATGGGCTTCAGGGTCATAAAGAATGGCTGGCTGAAGTAAATTTCCTTGGTGACCTTGTCCATCCAAACTTGGTAAAACTTATTGGATACTGCATTGAAGATGATCAAAGGCTGCTAGTGTATGAGTTCATGCCTCGAGGGAGCTTGGAGAACCACCTATTTAGGAGGTCCCTGCCTCTTCCATGGTCTATTAGAATGAAAATTGCATTGGGTGCGGCAAAAGGTCTTGCTTTTCTTCATGAGGAGGCAGAAAGACCTGTGATTTATCGTGACTTTAAAACCTCCAACATCTTATTGGATGCAATACAAGGATGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Pkinase Pkinase_Tyr

Protein Analysis

154

Amino Acids

17.36

Weight (kDa)

8.47

Isoelectric Point (pI)

41.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
PK_Tyr_Ser-Thr PF07714 10 - 150 1.1e-23 Protein tyrosine and serine/threonine kinase
Pkinase PF00069 15 - 149 5.4e-19 Protein kinase domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready
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Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AbsI CCTCGAGG 1 cut(s) 282
AciI CCGC 1 cut(s) 362
AcsI RAATTY 2 cut(s) 16, 187
AcuI CTGAAG 2 cut(s) 140, 201
AfiI CCNNNNNNNGG 1 cut(s) 113
AgsI TTSAA 5 cut(s) 14, 22, 44, 67, 245
AjnI CCWGG 1 cut(s) 106
AjuI GAANNNNNNNTTGG 2 cut(s) 338, 370
AluBI AGCT 1 cut(s) 291
AluI AGCT 1 cut(s) 291
Ama87I CYCGRG 1 cut(s) 282
ApeKI GCWGC 1 cut(s) 259
ApoI RAATTY 2 cut(s) 16, 187
AspS9I GGNCC 1 cut(s) 315
AsuHPI GGTGA 1 cut(s) 209
AvaI CYCGRG 1 cut(s) 282
AvaII GGWCC 1 cut(s) 315
BbvI GCAGC 1 cut(s) 246
BccI CCATC 2 cut(s) 143, 216
BciT130I CCWGG 1 cut(s) 108
BciVI GTATCC 1 cut(s) 227
BclI TGATCA 1 cut(s) 250
BfaI CTAG 2 cut(s) 263, 463
BfuI GTATCC 1 cut(s) 227
BisI GCNGC 2 cut(s) 260, 363
BlsI GCNGC 2 cut(s) 261, 364
Bme1390I CCNGG 1 cut(s) 108
Bme18I GGWCC 1 cut(s) 315
BmeT110I CYCGRG 1 cut(s) 282
BmgT120I GGNCC 1 cut(s) 315
BmiI GGNNCC 1 cut(s) 317
BmrFI CCNGG 1 cut(s) 108
BmsI GCATC 3 cut(s) 13, 436, 449
BpmI CTGGAG 1 cut(s) 81
BsaJI CCNNGG 2 cut(s) 193, 329
Bsc4I CCNNNNNNNGG 1 cut(s) 113
Bse1I ACTGG 1 cut(s) 98
BseBI CCWGG 1 cut(s) 108
BseDI CCNNGG 2 cut(s) 193, 329
BseGI GGATG 4 cut(s) 4, 208, 451, 464
BseLI CCNNNNNNNGG 1 cut(s) 113
BseNI ACTGG 1 cut(s) 98
BseRI GAGGAG 1 cut(s) 404
BseXI GCAGC 1 cut(s) 246
BsiHKCI CYCGRG 1 cut(s) 282
BslFI GGGAC 1 cut(s) 301
BslI CCNNNNNNNGG 1 cut(s) 113
BsmFI GGGAC 1 cut(s) 301
BsoBI CYCGRG 1 cut(s) 282
Bsp143I GATC 1 cut(s) 250
Bsp19I CCATGG 1 cut(s) 329
BspACI CCGC 1 cut(s) 362
BspHI TCATGA 2 cut(s) 145, 385
BspLI GGNNCC 1 cut(s) 317
BsrI ACTGG 1 cut(s) 98
BssECI CCNNGG 2 cut(s) 193, 329
BssMI GATC 1 cut(s) 250
BssT1I CCWWGG 2 cut(s) 193, 329
Bst2UI CCWGG 1 cut(s) 108
Bst4CI ACNGT 1 cut(s) 124
Bst6I CTCTTC 2 cut(s) 17, 330
BstAPI GCANNNNNTGC 1 cut(s) 359
BstC8I GCNNGC 1 cut(s) 177
BstDSI CCRYGG 1 cut(s) 329
BstEII GGTNACC 1 cut(s) 197
BstENI CCTNNNNNAGG 1 cut(s) 111
BstF5I GGATG 4 cut(s) 4, 208, 451, 464
BstKTI GATC 1 cut(s) 253
BstMBI GATC 1 cut(s) 250
BstMWI GCNNNNNNNGC 1 cut(s) 359
BstNI CCWGG 1 cut(s) 108
BstPI GGTNACC 1 cut(s) 197
BstSCI CCNGG 1 cut(s) 106
BstV1I GCAGC 1 cut(s) 246
BsuI GTATCC 1 cut(s) 227
BtgI CCRYGG 1 cut(s) 329
BtsCI GGATG 4 cut(s) 4, 208, 451, 464
Cac8I GCNNGC 1 cut(s) 177
CciI TCATGA 2 cut(s) 145, 385
Cfr13I GGNCC 1 cut(s) 315
CviAII CATG 4 cut(s) 146, 277, 330, 386
CviJI RGCY 5 cut(s) 154, 175, 179, 259, 291
CviKI_1 RGCY 5 cut(s) 154, 175, 179, 259, 291
DpnI GATC 1 cut(s) 252
DpnII GATC 1 cut(s) 250
DraI TTTAAA 1 cut(s) 424
Eam1104I CTCTTC 2 cut(s) 17, 330
EarI CTCTTC 2 cut(s) 17, 330
Eco130I CCWWGG 2 cut(s) 193, 329
Eco47I GGWCC 1 cut(s) 315
Eco57I CTGAAG 2 cut(s) 140, 201
Eco88I CYCGRG 1 cut(s) 282
Eco91I GGTNACC 1 cut(s) 197
EcoNI CCTNNNNNAGG 1 cut(s) 111
EcoO109I RGGNCCY 1 cut(s) 315
EcoO65I GGTNACC 1 cut(s) 197
EcoRII CCWGG 1 cut(s) 106
EcoT14I CCWWGG 2 cut(s) 193, 329
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 2 cut(s) 193, 329
FaeI CATG 4 cut(s) 149, 280, 333, 389
FaiI YATR 6 cut(s) 147, 165, 270, 278, 331, 387
FalI AAGNNNNNCTT 2 cut(s) 14, 46
FaqI GGGAC 1 cut(s) 301
FatI CATG 4 cut(s) 145, 276, 329, 385
FbaI TGATCA 1 cut(s) 250
Fnu4HI GCNGC 2 cut(s) 260, 363
FokI GGATG 2 cut(s) 195, 458
Fsp4HI GCNGC 2 cut(s) 260, 363
FspBI CTAG 2 cut(s) 263, 463
GluI GCNGC 2 cut(s) 260, 363
GsuI CTGGAG 1 cut(s) 81
Hin1II CATG 4 cut(s) 149, 280, 333, 389
HphI GGTGA 1 cut(s) 209
Hpy188III TCNNGA 3 cut(s) 146, 386, 416
HpyCH4III ACNGT 1 cut(s) 124
HpyCH4V TGCA 4 cut(s) 4, 240, 353, 449
HpyF10VI GCNNNNNNNGC 1 cut(s) 359
Hsp92II CATG 4 cut(s) 149, 280, 333, 389
Ksp22I TGATCA 1 cut(s) 250
Kzo9I GATC 1 cut(s) 250
LmnI GCTCC 2 cut(s) 100, 288
LpnPI CCDG 8 cut(s) 93, 99, 111, 120, 143, 161, 332, 417
Lsp1109I GCAGC 1 cut(s) 246
LweI GCATC 3 cut(s) 13, 436, 449
MaeI CTAG 2 cut(s) 263, 463
MaeIII GTNAC 2 cut(s) 197, 416
MalI GATC 1 cut(s) 252
MboI GATC 1 cut(s) 250
MboII GAAGA 5 cut(s) 34, 92, 257, 317, 374
MluCI AATT 3 cut(s) 16, 187, 348
MmeI TCCRAC 1 cut(s) 456
MnlI CCTC 8 cut(s) 18, 278, 291, 306, 333, 382, 385, 439
Mph1103I ATGCAT 1 cut(s) 6
MseI TTAA 4 cut(s) 32, 132, 141, 423
MspR9I CCNGG 1 cut(s) 108
MvaI CCWGG 1 cut(s) 108
MwoI GCNNNNNNNGC 1 cut(s) 359
NcoI CCATGG 1 cut(s) 329
NdeII GATC 1 cut(s) 250
NlaIII CATG 4 cut(s) 149, 280, 333, 389
NlaIV GGNNCC 1 cut(s) 317
NmuCI GTSAC 2 cut(s) 197, 416
NsiI ATGCAT 1 cut(s) 6
PaeR7I CTCGAG 1 cut(s) 282
PagI TCATGA 2 cut(s) 145, 385
PflFI GACNNNGTC 1 cut(s) 203
PkrI GCNGC 2 cut(s) 261, 364
PpuMI RGGWCCY 1 cut(s) 315
Psp5II RGGWCCY 1 cut(s) 315
Psp6I CCWGG 1 cut(s) 106
PspEI GGTNACC 1 cut(s) 197
PspGI CCWGG 1 cut(s) 106
PspN4I GGNNCC 1 cut(s) 317
PspPI GGNCC 1 cut(s) 315
PspPPI RGGWCCY 1 cut(s) 315
PspXI VCTCGAGB 1 cut(s) 282
PsyI GACNNNGTC 1 cut(s) 203
SaqAI TTAA 4 cut(s) 32, 132, 141, 423
SatI GCNGC 2 cut(s) 260, 363
Sau3AI GATC 1 cut(s) 250
Sau96I GGNCC 1 cut(s) 315
ScrFI CCNGG 1 cut(s) 108
SetI ASST 9 cut(s) 49, 109, 204, 293, 306, 317, 373, 406, 431
SfaNI GCATC 3 cut(s) 13, 436, 449
Sfr274I CTCGAG 1 cut(s) 282
SinI GGWCC 1 cut(s) 315
SlaI CTCGAG 1 cut(s) 282
SmlI CTYRAG 1 cut(s) 282
SmoI CTYRAG 1 cut(s) 282
Sse9I AATT 3 cut(s) 16, 187, 348
SsiI CCGC 1 cut(s) 362
SspMI CTAG 2 cut(s) 263, 463
StyD4I CCNGG 1 cut(s) 106
StyI CCWWGG 2 cut(s) 193, 329
TaaI ACNGT 1 cut(s) 124
TaqI TCGA 1 cut(s) 283
TasI AATT 3 cut(s) 16, 187, 348
TauI GCSGC 1 cut(s) 365
Tru1I TTAA 4 cut(s) 32, 132, 141, 423
Tru9I TTAA 4 cut(s) 32, 132, 141, 423
TseFI GTSAC 2 cut(s) 197, 416
TseI GCWGC 1 cut(s) 259
Tsp45I GTSAC 2 cut(s) 197, 416
TspDTI ATGAA 3 cut(s) 265, 359, 374
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 1 cut(s) 315
XagI CCTNNNNNAGG 1 cut(s) 111
XapI RAATTY 2 cut(s) 16, 187
XcmI CCANNNNNNNNNTGG 1 cut(s) 439
XhoI CTCGAG 1 cut(s) 282
XspI CTAG 2 cut(s) 263, 463
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.