phenylalanine--tRNA ligase alpha
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 2445 |
| AasI | GACNNNNNNGTC | 1 cut(s) | 2571 |
| AatII | GACGTC | 1 cut(s) | 523 |
| Acc16I | TGCGCA | 1 cut(s) | 635 |
| Acc36I | ACCTGC | 1 cut(s) | 2445 |
| Acc65I | GGTACC | 1 cut(s) | 1014 |
| AccB1I | GGYRCC | 1 cut(s) | 1014 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 2128 |
| AccI | GTMKAC | 1 cut(s) | 1371 |
| AccIII | TCCGGA | 1 cut(s) | 1078 |
| AciI | CCGC | 3 cut(s) | 73, 656, 2440 |
| AclI | AACGTT | 1 cut(s) | 2872 |
| AclWI | GGATC | 2 cut(s) | 790, 1362 |
| AcsI | RAATTY | 8 cut(s) | 425, 914, 949, 1242, 1721, 1947, 2097, 2665 |
| AcuI | CTGAAG | 2 cut(s) | 89, 1569 |
| AcyI | GRCGYC | 1 cut(s) | 520 |
| AdeI | CACNNNGTG | 1 cut(s) | 1091 |
| AfaI | GTAC | 5 cut(s) | 1016, 1646, 1967, 2085, 2798 |
| AfiI | CCNNNNNNNGG | 5 cut(s) | 35, 2128, 2176, 2439, 2607 |
| AflII | CTTAAG | 1 cut(s) | 13 |
| AflIII | ACRYGT | 2 cut(s) | 1035, 2412 |
| AhlI | ACTAGT | 1 cut(s) | 1649 |
| AjiI | CACGTC | 2 cut(s) | 372, 1036 |
| AjuI | GAANNNNNNNTTGG | 4 cut(s) | 675, 707, 2083, 2115 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 239, 271 |
| Alw21I | GWGCWC | 2 cut(s) | 352, 1771 |
| Alw26I | GTCTC | 6 cut(s) | 362, 766, 871, 1876, 2319, 2801 |
| AlwI | GGATC | 2 cut(s) | 790, 1362 |
| Aor13HI | TCCGGA | 1 cut(s) | 1078 |
| AoxI | GGCC | 4 cut(s) | 192, 396, 564, 2568 |
| ApeKI | GCWGC | 6 cut(s) | 51, 113, 200, 1435, 1595, 2364 |
| ApoI | RAATTY | 8 cut(s) | 425, 914, 949, 1242, 1721, 1947, 2097, 2665 |
| Asp700I | GAANNNNTTC | 5 cut(s) | 320, 839, 1220, 1299, 2400 |
| Asp718I | GGTACC | 1 cut(s) | 1014 |
| AspLEI | GCGC | 2 cut(s) | 636, 2121 |
| AspS9I | GGNCC | 2 cut(s) | 1276, 2526 |
| AsuC2I | CCSGG | 1 cut(s) | 268 |
| AsuHPI | GGTGA | 5 cut(s) | 740, 808, 2415, 2716, 2903 |
| AsuII | TTCGAA | 1 cut(s) | 2041 |
| AvaII | GGWCC | 2 cut(s) | 1276, 2526 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 1636, 1669 |
| BanI | GGYRCC | 1 cut(s) | 1014 |
| BanII | GRGCYC | 1 cut(s) | 1578 |
| BarI | GAAGNNNNNNTAC | 4 cut(s) | 2070, 2102, 2532, 2564 |
| BbsI | GAAGAC | 7 cut(s) | 417, 708, 894, 1131, 1292, 1329, 1509 |
| Bbv12I | GWGCWC | 2 cut(s) | 352, 1771 |
| BbvCI | CCTCAGC | 2 cut(s) | 196, 336 |
| BbvI | GCAGC | 6 cut(s) | 38, 125, 187, 1422, 1607, 2376 |
| BccI | CCATC | 4 cut(s) | 720, 1733, 2130, 2197 |
| BceAI | ACGGC | 1 cut(s) | 1249 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 833, 867 |
| BciVI | GTATCC | 1 cut(s) | 1181 |
| BclI | TGATCA | 3 cut(s) | 906, 1512, 2109 |
| BcnI | CCSGG | 1 cut(s) | 268 |
| BcoDI | GTCTC | 6 cut(s) | 362, 766, 871, 1876, 2319, 2801 |
| BcuI | ACTAGT | 1 cut(s) | 1649 |
| BfmI | CTRYAG | 3 cut(s) | 111, 967, 2904 |
| BfrI | CTTAAG | 1 cut(s) | 13 |
| BfuAI | ACCTGC | 1 cut(s) | 2445 |
| BfuI | GTATCC | 1 cut(s) | 1181 |
| BglII | AGATCT | 1 cut(s) | 208 |
| BisI | GCNGC | 8 cut(s) | 52, 74, 114, 201, 1436, 1596, 2365, 2441 |
| BlsI | GCNGC | 8 cut(s) | 53, 75, 115, 202, 1437, 1597, 2366, 2442 |
| Bme1390I | CCNGG | 1 cut(s) | 268 |
| Bme18I | GGWCC | 2 cut(s) | 1276, 2526 |
| BmgBI | CACGTC | 2 cut(s) | 372, 1036 |
| BmgT120I | GGNCC | 2 cut(s) | 1276, 2526 |
| BmiI | GGNNCC | 2 cut(s) | 1016, 1277 |
| BmrFI | CCNGG | 1 cut(s) | 268 |
| BmrI | ACTGGG | 1 cut(s) | 2138 |
| BmuI | ACTGGG | 1 cut(s) | 2138 |
| BpiI | GAAGAC | 7 cut(s) | 417, 708, 894, 1131, 1292, 1329, 1509 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 1987, 2019 |
| BpmI | CTGGAG | 4 cut(s) | 320, 1785, 2597, 2702 |
| Bpu10I | CCTNAGC | 2 cut(s) | 196, 336 |
| Bpu14I | TTCGAA | 1 cut(s) | 2041 |
| BpuEI | CTTGAG | 3 cut(s) | 263, 1280, 2164 |
| BpuMI | CCSGG | 1 cut(s) | 268 |
| BsaAI | YACGTR | 1 cut(s) | 1688 |
| BsaHI | GRCGYC | 1 cut(s) | 520 |
| BsaI | GGTCTC | 1 cut(s) | 2319 |
| BsaJI | CCNNGG | 3 cut(s) | 267, 765, 2290 |
| BsaWI | WCCGGW | 2 cut(s) | 1078, 1252 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 267, 297 |
| Bsc4I | CCNNNNNNNGG | 5 cut(s) | 35, 2128, 2176, 2439, 2607 |
| Bse1I | ACTGG | 5 cut(s) | 1768, 2133, 2469, 2571, 2719 |
| Bse3DI | GCAATG | 5 cut(s) | 61, 261, 1406, 2295, 2756 |
| BseAI | TCCGGA | 1 cut(s) | 1078 |
| BseDI | CCNNGG | 3 cut(s) | 267, 765, 2290 |
| BseGI | GGATG | 6 cut(s) | 254, 731, 940, 1036, 1048, 1087 |
| BseLI | CCNNNNNNNGG | 5 cut(s) | 35, 2128, 2176, 2439, 2607 |
| BseMI | GCAATG | 5 cut(s) | 61, 261, 1406, 2295, 2756 |
| BseMII | CTCAG | 2 cut(s) | 210, 327 |
| BseNI | ACTGG | 5 cut(s) | 1768, 2133, 2469, 2571, 2719 |
| BseRI | GAGGAG | 2 cut(s) | 380, 2418 |
| BseXI | GCAGC | 6 cut(s) | 38, 125, 187, 1422, 1607, 2376 |
| BshFI | GGCC | 4 cut(s) | 194, 398, 566, 2570 |
| BshNI | GGYRCC | 1 cut(s) | 1014 |
| BsiHKAI | GWGCWC | 2 cut(s) | 352, 1771 |
| BsiSI | CCGG | 3 cut(s) | 267, 1079, 1253 |
| BslFI | GGGAC | 3 cut(s) | 625, 1289, 2760 |
| BslI | CCNNNNNNNGG | 5 cut(s) | 35, 2128, 2176, 2439, 2607 |
| BsmAI | GTCTC | 6 cut(s) | 362, 766, 871, 1876, 2319, 2801 |
| BsmBI | CGTCTC | 1 cut(s) | 362 |
| BsmFI | GGGAC | 3 cut(s) | 625, 1289, 2760 |
| BsmI | GAATGC | 2 cut(s) | 1220, 1936 |
| BsnI | GGCC | 4 cut(s) | 194, 398, 566, 2570 |
| Bso31I | GGTCTC | 1 cut(s) | 2319 |
| Bsp119I | TTCGAA | 1 cut(s) | 2041 |
| Bsp1286I | GDGCHC | 3 cut(s) | 352, 1578, 1771 |
| Bsp13I | TCCGGA | 1 cut(s) | 1078 |
| Bsp143I | GATC | 9 cut(s) | 17, 208, 277, 782, 906, 1354, 1512, 1678, 2109 |
| BspACI | CCGC | 3 cut(s) | 73, 656, 2440 |
| BspANI | GGCC | 4 cut(s) | 194, 398, 566, 2570 |
| BspCNI | CTCAG | 2 cut(s) | 209, 328 |
| BspEI | TCCGGA | 1 cut(s) | 1078 |
| BspHI | TCATGA | 1 cut(s) | 960 |
| BspLI | GGNNCC | 2 cut(s) | 1016, 1277 |
| BspMAI | CTGCAG | 2 cut(s) | 115, 2908 |
| BspMI | ACCTGC | 1 cut(s) | 2445 |
| BspPI | GGATC | 2 cut(s) | 790, 1362 |
| BspT104I | TTCGAA | 1 cut(s) | 2041 |
| BspT107I | GGYRCC | 1 cut(s) | 1014 |
| BspTI | CTTAAG | 1 cut(s) | 13 |
| BspTNI | GGTCTC | 1 cut(s) | 2319 |
| BsrDI | GCAATG | 5 cut(s) | 61, 261, 1406, 2295, 2756 |
| BsrI | ACTGG | 5 cut(s) | 1768, 2133, 2469, 2571, 2719 |
| BssECI | CCNNGG | 3 cut(s) | 267, 765, 2290 |
| BssMI | GATC | 9 cut(s) | 17, 208, 277, 782, 906, 1354, 1512, 1678, 2109 |
| BssNI | GRCGYC | 1 cut(s) | 520 |
| BssT1I | CCWWGG | 1 cut(s) | 2290 |
| Bst4CI | ACNGT | 7 cut(s) | 848, 865, 1169, 1792, 2138, 2171, 2812 |
| Bst6I | CTCTTC | 1 cut(s) | 2340 |
| BstACI | GRCGYC | 1 cut(s) | 520 |
| BstAFI | CTTAAG | 1 cut(s) | 13 |
| BstBAI | YACGTR | 1 cut(s) | 1688 |
| BstBI | TTCGAA | 1 cut(s) | 2041 |
| BstC8I | GCNNGC | 7 cut(s) | 352, 382, 1600, 1695, 1771, 2458, 2660 |
| BstDEI | CTNAG | 8 cut(s) | 196, 336, 896, 1341, 1439, 2264, 2654, 2725 |
| BstDSI | CCRYGG | 1 cut(s) | 765 |
| BstEII | GGTNACC | 1 cut(s) | 2132 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 33 |
| BstF5I | GGATG | 6 cut(s) | 254, 731, 940, 1036, 1048, 1087 |
| BstHHI | GCGC | 2 cut(s) | 636, 2121 |
| BstKTI | GATC | 9 cut(s) | 20, 211, 280, 785, 909, 1357, 1515, 1681, 2112 |
| BstMAI | GTCTC | 6 cut(s) | 362, 766, 871, 1876, 2319, 2801 |
| BstMBI | GATC | 9 cut(s) | 17, 208, 277, 782, 906, 1354, 1512, 1678, 2109 |
| BstMWI | GCNNNNNNNGC | 5 cut(s) | 191, 200, 985, 1316, 2903 |
| BstNSI | RCATGY | 1 cut(s) | 1668 |
| BstPI | GGTNACC | 1 cut(s) | 2132 |
| BstSCI | CCNGG | 1 cut(s) | 266 |
| BstSFI | CTRYAG | 3 cut(s) | 111, 967, 2904 |
| BstV1I | GCAGC | 6 cut(s) | 38, 125, 187, 1422, 1607, 2376 |
| BstV2I | GAAGAC | 7 cut(s) | 417, 708, 894, 1131, 1292, 1329, 1509 |
| BstX2I | RGATCY | 1 cut(s) | 208 |
| BstXI | CCANNNNNNTGG | 1 cut(s) | 233 |
| BstYI | RGATCY | 1 cut(s) | 208 |
| BsuI | GTATCC | 1 cut(s) | 1181 |
| BsuRI | GGCC | 4 cut(s) | 194, 398, 566, 2570 |
| BtgI | CCRYGG | 1 cut(s) | 765 |
| BtrI | CACGTC | 2 cut(s) | 372, 1036 |
| BtsCI | GGATG | 6 cut(s) | 254, 731, 940, 1036, 1048, 1087 |
| BtsI | GCAGTG | 1 cut(s) | 2913 |
| BtsIMutI | CAGTG | 2 cut(s) | 1854, 2913 |
| BveI | ACCTGC | 1 cut(s) | 2445 |
| Cac8I | GCNNGC | 7 cut(s) | 352, 382, 1600, 1695, 1771, 2458, 2660 |
| CciI | TCATGA | 1 cut(s) | 960 |
| CfoI | GCGC | 2 cut(s) | 636, 2121 |
| Cfr13I | GGNCC | 2 cut(s) | 1276, 2526 |
| Csp6I | GTAC | 5 cut(s) | 1015, 1645, 1966, 2084, 2797 |
| CviQI | GTAC | 5 cut(s) | 1015, 1645, 1966, 2084, 2797 |
| DdeI | CTNAG | 8 cut(s) | 196, 336, 896, 1341, 1439, 2264, 2654, 2725 |
| DpnI | GATC | 9 cut(s) | 19, 210, 279, 784, 908, 1356, 1514, 1680, 2111 |
| DpnII | GATC | 9 cut(s) | 17, 208, 277, 782, 906, 1354, 1512, 1678, 2109 |
| DraI | TTTAAA | 2 cut(s) | 954, 2640 |
| DraIII | CACNNNGTG | 1 cut(s) | 1091 |
| DrdI | GACNNNNNNGTC | 1 cut(s) | 2571 |
| DseDI | GACNNNNNNGTC | 1 cut(s) | 2571 |
| Eam1104I | CTCTTC | 1 cut(s) | 2340 |
| EarI | CTCTTC | 1 cut(s) | 2340 |
| Eco130I | CCWWGG | 1 cut(s) | 2290 |
| Eco24I | GRGCYC | 1 cut(s) | 1578 |
| Eco31I | GGTCTC | 1 cut(s) | 2319 |
| Eco47I | GGWCC | 2 cut(s) | 1276, 2526 |
| Eco57I | CTGAAG | 2 cut(s) | 89, 1569 |
| Eco91I | GGTNACC | 1 cut(s) | 2132 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 33 |
| EcoO109I | RGGNCCY | 1 cut(s) | 1276 |
| EcoO65I | GGTNACC | 1 cut(s) | 2132 |
| EcoRI | GAATTC | 2 cut(s) | 425, 914 |
| EcoT14I | CCWWGG | 1 cut(s) | 2290 |
| EcoT22I | ATGCAT | 4 cut(s) | 856, 1198, 1677, 2744 |
| EcoT38I | GRGCYC | 1 cut(s) | 1578 |
| ErhI | CCWWGG | 1 cut(s) | 2290 |
| Esp3I | CGTCTC | 1 cut(s) | 362 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 879, 911 |
| FaqI | GGGAC | 3 cut(s) | 625, 1289, 2760 |
| FauNDI | CATATG | 1 cut(s) | 438 |
| FbaI | TGATCA | 3 cut(s) | 906, 1512, 2109 |
| FblI | GTMKAC | 1 cut(s) | 1371 |
| Fnu4HI | GCNGC | 8 cut(s) | 52, 74, 114, 201, 1436, 1596, 2365, 2441 |
| FokI | GGATG | 6 cut(s) | 241, 738, 947, 1043, 1055, 1094 |
| FriOI | GRGCYC | 1 cut(s) | 1578 |
| Fsp4HI | GCNGC | 8 cut(s) | 52, 74, 114, 201, 1436, 1596, 2365, 2441 |
| FspI | TGCGCA | 1 cut(s) | 635 |
| GlaI | GCGC | 2 cut(s) | 635, 2120 |
| GluI | GCNGC | 8 cut(s) | 52, 74, 114, 201, 1436, 1596, 2365, 2441 |
| GsuI | CTGGAG | 4 cut(s) | 320, 1785, 2597, 2702 |
| HaeIII | GGCC | 4 cut(s) | 194, 398, 566, 2570 |
| HapII | CCGG | 3 cut(s) | 267, 1079, 1253 |
| HhaI | GCGC | 2 cut(s) | 636, 2121 |
| Hin1I | GRCGYC | 1 cut(s) | 520 |
| Hin6I | GCGC | 2 cut(s) | 634, 2119 |
| HinP1I | GCGC | 2 cut(s) | 634, 2119 |
| HincII | GTYRAC | 2 cut(s) | 1048, 2410 |
| HindII | GTYRAC | 2 cut(s) | 1048, 2410 |
| HindIII | AAGCTT | 5 cut(s) | 901, 2036, 2620, 2642, 2656 |
| HinfI | GANTC | 9 cut(s) | 659, 1004, 1101, 1657, 2067, 2237, 2356, 2532, 2831 |
| HpaII | CCGG | 3 cut(s) | 267, 1079, 1253 |
| HphI | GGTGA | 5 cut(s) | 740, 808, 2415, 2716, 2903 |
| Hpy166II | GTNNAC | 7 cut(s) | 994, 1048, 1250, 1372, 1490, 1647, 2410 |
| Hpy188I | TCNGA | 5 cut(s) | 22, 1897, 2066, 2194, 2242 |
| Hpy8I | GTNNAC | 7 cut(s) | 994, 1048, 1250, 1372, 1490, 1647, 2410 |
| HpyCH4III | ACNGT | 7 cut(s) | 848, 865, 1169, 1792, 2138, 2171, 2812 |
| HpyCH4IV | ACGT | 7 cut(s) | 371, 414, 520, 1035, 1687, 2414, 2872 |
| HpyF10VI | GCNNNNNNNGC | 5 cut(s) | 191, 200, 985, 1316, 2903 |
| HpyF3I | CTNAG | 8 cut(s) | 196, 336, 896, 1341, 1439, 2264, 2654, 2725 |
| HpySE526I | ACGT | 7 cut(s) | 371, 414, 520, 1035, 1687, 2414, 2872 |
| Hsp92I | GRCGYC | 1 cut(s) | 520 |
| HspAI | GCGC | 2 cut(s) | 634, 2119 |
| Kpn2I | TCCGGA | 1 cut(s) | 1078 |
| KpnI | GGTACC | 1 cut(s) | 1018 |
| Ksp22I | TGATCA | 3 cut(s) | 906, 1512, 2109 |
| Kzo9I | GATC | 9 cut(s) | 17, 208, 277, 782, 906, 1354, 1512, 1678, 2109 |
| LmnI | GCTCC | 7 cut(s) | 301, 347, 1201, 1255, 1362, 1766, 2843 |
| Lsp1109I | GCAGC | 6 cut(s) | 38, 125, 187, 1422, 1607, 2376 |
| MaeII | ACGT | 7 cut(s) | 371, 414, 520, 1035, 1687, 2414, 2872 |
| MaeIII | GTNAC | 8 cut(s) | 24, 859, 1397, 1824, 1852, 2132, 2380, 2584 |
| MalI | GATC | 9 cut(s) | 19, 210, 279, 784, 908, 1356, 1514, 1680, 2111 |
| MboI | GATC | 9 cut(s) | 17, 208, 277, 782, 906, 1354, 1512, 1678, 2109 |
| MfeI | CAATTG | 1 cut(s) | 1938 |
| MflI | RGATCY | 1 cut(s) | 208 |
| MhlI | GDGCHC | 3 cut(s) | 352, 1578, 1771 |
| MlyI | GAGTC | 3 cut(s) | 1013, 2526, 2840 |
| MmeI | TCCRAC | 5 cut(s) | 253, 673, 1198, 1332, 1634 |
| Mph1103I | ATGCAT | 4 cut(s) | 856, 1198, 1677, 2744 |
| MroI | TCCGGA | 1 cut(s) | 1078 |
| MroXI | GAANNNNTTC | 5 cut(s) | 320, 839, 1220, 1299, 2400 |
| MslI | CAYNNNNRTG | 2 cut(s) | 441, 554 |
| MspA1I | CMGCKG | 1 cut(s) | 200 |
| MspCI | CTTAAG | 1 cut(s) | 13 |
| MspI | CCGG | 3 cut(s) | 267, 1079, 1253 |
| MspR9I | CCNGG | 1 cut(s) | 268 |
| MunI | CAATTG | 1 cut(s) | 1938 |
| Mva1269I | GAATGC | 2 cut(s) | 1220, 1936 |
| MwoI | GCNNNNNNNGC | 5 cut(s) | 191, 200, 985, 1316, 2903 |
| NciI | CCSGG | 1 cut(s) | 268 |
| NdeI | CATATG | 1 cut(s) | 438 |
| NdeII | GATC | 9 cut(s) | 17, 208, 277, 782, 906, 1354, 1512, 1678, 2109 |
| NlaIV | GGNNCC | 2 cut(s) | 1016, 1277 |
| NmuCI | GTSAC | 2 cut(s) | 1824, 1852 |
| NsbI | TGCGCA | 1 cut(s) | 635 |
| NsiI | ATGCAT | 4 cut(s) | 856, 1198, 1677, 2744 |
| NspI | RCATGY | 1 cut(s) | 1668 |
| NspV | TTCGAA | 1 cut(s) | 2041 |
| PagI | TCATGA | 1 cut(s) | 960 |
| PaqCI | CACCTGC | 1 cut(s) | 2445 |
| PctI | GAATGC | 2 cut(s) | 1220, 1936 |
| PdmI | GAANNNNTTC | 5 cut(s) | 320, 839, 1220, 1299, 2400 |
| PfeI | GAWTC | 6 cut(s) | 659, 1101, 1657, 2067, 2237, 2356 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 2128 |
| PkrI | GCNGC | 8 cut(s) | 53, 75, 115, 202, 1437, 1597, 2366, 2442 |
| PleI | GAGTC | 3 cut(s) | 1012, 2526, 2839 |
| PpsI | GAGTC | 3 cut(s) | 1012, 2526, 2839 |
| Ppu21I | YACGTR | 1 cut(s) | 1688 |
| PpuMI | RGGWCCY | 1 cut(s) | 1276 |
| Psp1406I | AACGTT | 1 cut(s) | 2872 |
| Psp5II | RGGWCCY | 1 cut(s) | 1276 |
| PspEI | GGTNACC | 1 cut(s) | 2132 |
| PspN4I | GGNNCC | 2 cut(s) | 1016, 1277 |
| PspPI | GGNCC | 2 cut(s) | 1276, 2526 |
| PspPPI | RGGWCCY | 1 cut(s) | 1276 |
| PstI | CTGCAG | 2 cut(s) | 115, 2908 |
| PsuI | RGATCY | 1 cut(s) | 208 |
| PvuII | CAGCTG | 1 cut(s) | 200 |
| RsaI | GTAC | 5 cut(s) | 1016, 1646, 1967, 2085, 2798 |
| RsaNI | GTAC | 5 cut(s) | 1015, 1645, 1966, 2084, 2797 |
| RseI | CAYNNNNRTG | 2 cut(s) | 441, 554 |
| SatI | GCNGC | 8 cut(s) | 52, 74, 114, 201, 1436, 1596, 2365, 2441 |
| Sau3AI | GATC | 9 cut(s) | 17, 208, 277, 782, 906, 1354, 1512, 1678, 2109 |
| Sau96I | GGNCC | 2 cut(s) | 1276, 2526 |
| SchI | GAGTC | 3 cut(s) | 1013, 2526, 2840 |
| ScrFI | CCNGG | 1 cut(s) | 268 |
| SduI | GDGCHC | 3 cut(s) | 352, 1578, 1771 |
| SfcI | CTRYAG | 3 cut(s) | 111, 967, 2904 |
| SfuI | TTCGAA | 1 cut(s) | 2041 |
| SinI | GGWCC | 2 cut(s) | 1276, 2526 |
| SmiI | ATTTAAAT | 1 cut(s) | 954 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 441, 554 |
| SmlI | CTYRAG | 4 cut(s) | 13, 242, 1259, 2143 |
| SmoI | CTYRAG | 4 cut(s) | 13, 242, 1259, 2143 |
| SpeI | ACTAGT | 1 cut(s) | 1649 |
| SsiI | CCGC | 3 cut(s) | 73, 656, 2440 |
| StyD4I | CCNGG | 1 cut(s) | 266 |
| StyI | CCWWGG | 1 cut(s) | 2290 |
| SwaI | ATTTAAAT | 1 cut(s) | 954 |
| TaaI | ACNGT | 7 cut(s) | 848, 865, 1169, 1792, 2138, 2171, 2812 |
| TaiI | ACGT | 7 cut(s) | 374, 417, 523, 1038, 1690, 2417, 2875 |
| TaqI | TCGA | 9 cut(s) | 463, 470, 843, 1099, 1117, 1560, 2041, 2404, 2535 |
| TatI | WGTACW | 1 cut(s) | 1965 |
| TauI | GCSGC | 2 cut(s) | 76, 2443 |
| TfiI | GAWTC | 6 cut(s) | 659, 1101, 1657, 2067, 2237, 2356 |
| TscAI | CASTG | 2 cut(s) | 1861, 2913 |
| TseFI | GTSAC | 2 cut(s) | 1824, 1852 |
| TseI | GCWGC | 6 cut(s) | 51, 113, 200, 1435, 1595, 2364 |
| Tsp45I | GTSAC | 2 cut(s) | 1824, 1852 |
| TspGWI | ACGGA | 2 cut(s) | 147, 754 |
| TspRI | CASTG | 2 cut(s) | 1861, 2913 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 2128 |
| Vha464I | CTTAAG | 1 cut(s) | 13 |
| VpaK11BI | GGWCC | 2 cut(s) | 1276, 2526 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 33 |
| XapI | RAATTY | 8 cut(s) | 425, 914, 949, 1242, 1721, 1947, 2097, 2665 |
| XbaI | TCTAGA | 1 cut(s) | 1918 |
| XceI | RCATGY | 1 cut(s) | 1668 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 507 |
| XmiI | GTMKAC | 1 cut(s) | 1371 |
| XmnI | GAANNNNTTC | 5 cut(s) | 320, 839, 1220, 1299, 2400 |
| ZraI | GACGTC | 1 cut(s) | 521 |
| Zsp2I | ATGCAT | 4 cut(s) | 856, 1198, 1677, 2744 |