Rorug05G0521600

Squalene monooxygenase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
70727442 .. 70728724
1283 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0521600.1

Sequence Viewer

Length: 780 bp
ATGGTTTCTGGTGTATTCATATATGATATTCATAAGTTGAACTTCACTGCCTATGTGTGGGAGAAATTGGAATGTTTGCAAGAGCAGGCTCTAGTTTTGAGCGAAGAAGAATTATCCACTAGAGATTTCCCGGAACTTGAAGCAAACTGCATTTACATAGCCAAAAGAGAGGAAAGAAATTCTGATGGCCATGCTGTTTATGAGAAATGTCCAACAGTTGTAGTCTACAACTTGCAAAACAACGGTTTCAAGTCGTATTATATGTACCAAGAGGATAAGCCCATATTGCATTCACCACTTGTTTGGATTGTCCCCAGTCCGTATGAGAAAAGAAAGAAGGGAACTTCAATGGAAGAAGCAGACGCATTACAGCTAAAATGCGCAGCAGAAGCCAAATACAAAGAGTCCAACTTCAAATCAGCCCTCAAATACGCCAAGCGAGCGCATCGCCTGAGCCCGAACCTGGACGGCGTCTCCTCCATGGTCACCGCCTTCGAGATCCTCCGCACCGCCCACAAGAACGCCGCCCCAAATCCTCCCAACTGGTACAAGATCCTCCAGGTAGAGCCCTTTGCCCACATCAACACCATTCAGACCAAATACAAGAAGCTCACTTTTCTTCTCCACCCTGATAAGAACCCCCATTTGGGCTCCGACAAGGCCTTCAAGCTTGTAGGGGAGTCCTTTCGGTTCCTTTCTGATAGGATTAGGAGGAAGGAGTATGATATGAAGCTTAGGATTGGAGAATGGATGGTGGCCGGAAGTGGTGGTCTCCGGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

259

Amino Acids

29.95

Weight (kDa)

8.94

Isoelectric Point (pI)

48.5

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DnaJ PF00226 181 - 242 1.4e-14 DnaJ domain
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 382
AccI GTMKAC 1 cut(s) 225
AciI CCGC 4 cut(s) 489, 505, 510, 525
AclWI GGATC 2 cut(s) 493, 547
AcoI YGGCCR 2 cut(s) 187, 756
AcsI RAATTY 1 cut(s) 178
AcyI GRCGYC 1 cut(s) 471
AfaI GTAC 2 cut(s) 266, 548
AfiI CCNNNNNNNGG 4 cut(s) 57, 463, 646, 647
AgsI TTSAA 6 cut(s) 40, 140, 250, 348, 415, 667
AjnI CCWGG 2 cut(s) 462, 558
AjuI GAANNNNNNNTTGG 2 cut(s) 629, 661
AluBI AGCT 4 cut(s) 373, 610, 670, 733
AluI AGCT 4 cut(s) 373, 610, 670, 733
Alw26I GTCTC 2 cut(s) 478, 776
AlwI GGATC 2 cut(s) 493, 547
AoxI GGCC 3 cut(s) 187, 660, 756
ApeKI GCWGC 1 cut(s) 383
ApoI RAATTY 1 cut(s) 178
AspLEI GCGC 2 cut(s) 383, 445
AsuC2I CCSGG 1 cut(s) 131
AsuHPI GGTGA 2 cut(s) 285, 478
BalI TGGCCA 1 cut(s) 189
BanII GRGCYC 3 cut(s) 458, 570, 653
BbvI GCAGC 1 cut(s) 395
BccI CCATC 2 cut(s) 179, 745
BceAI ACGGC 1 cut(s) 484
BciT130I CCWGG 2 cut(s) 464, 560
BcnI CCSGG 1 cut(s) 131
BcoDI GTCTC 2 cut(s) 478, 776
BfaI CTAG 2 cut(s) 92, 120
BisI GCNGC 2 cut(s) 384, 525
BlsI GCNGC 2 cut(s) 385, 526
Bme1390I CCNGG 3 cut(s) 131, 464, 560
BmiI GGNNCC 2 cut(s) 652, 692
BmrFI CCNGG 3 cut(s) 131, 464, 560
BmrI ACTGGG 1 cut(s) 309
BmsI GCATC 1 cut(s) 454
BmuI ACTGGG 1 cut(s) 309
BpmI CTGGAG 1 cut(s) 542
Bpu10I CCTNAGC 2 cut(s) 452, 734
BpuMI CCSGG 1 cut(s) 131
BsaHI GRCGYC 1 cut(s) 471
BsaI GGTCTC 1 cut(s) 776
BsaJI CCNNGG 1 cut(s) 480
BsaWI WCCGGW 1 cut(s) 774
BsaXI ACNNNNNCTCC 2 cut(s) 458, 488
Bsc4I CCNNNNNNNGG 4 cut(s) 57, 463, 646, 647
Bse1I ACTGG 2 cut(s) 315, 548
BseBI CCWGG 2 cut(s) 464, 560
BseDI CCNNGG 1 cut(s) 480
BseGI GGATG 1 cut(s) 756
BseLI CCNNNNNNNGG 4 cut(s) 57, 463, 646, 647
BseMII CTCAG 1 cut(s) 443
BseNI ACTGG 2 cut(s) 315, 548
BseRI GAGGAG 1 cut(s) 466
BseXI GCAGC 1 cut(s) 395
BshFI GGCC 3 cut(s) 189, 662, 758
BsiSI CCGG 3 cut(s) 131, 759, 775
BslFI GGGAC 1 cut(s) 296
BslI CCNNNNNNNGG 4 cut(s) 57, 463, 646, 647
BsmAI GTCTC 2 cut(s) 478, 776
BsmBI CGTCTC 1 cut(s) 478
BsmFI GGGAC 1 cut(s) 296
BsmI GAATGC 1 cut(s) 289
BsnI GGCC 3 cut(s) 189, 662, 758
Bso31I GGTCTC 1 cut(s) 776
Bsp1286I GDGCHC 3 cut(s) 458, 570, 653
Bsp143I GATC 2 cut(s) 498, 552
Bsp19I CCATGG 1 cut(s) 480
BspACI CCGC 4 cut(s) 489, 505, 510, 525
BspANI GGCC 3 cut(s) 189, 662, 758
BspCNI CTCAG 1 cut(s) 444
BspLI GGNNCC 2 cut(s) 652, 692
BspPI GGATC 2 cut(s) 493, 547
BspTNI GGTCTC 1 cut(s) 776
BsrI ACTGG 2 cut(s) 315, 548
BssECI CCNNGG 1 cut(s) 480
BssMI GATC 2 cut(s) 498, 552
BssNI GRCGYC 1 cut(s) 471
BssT1I CCWWGG 1 cut(s) 480
Bst2UI CCWGG 2 cut(s) 464, 560
Bst4CI ACNGT 2 cut(s) 217, 245
BstACI GRCGYC 1 cut(s) 471
BstC8I GCNNGC 2 cut(s) 87, 441
BstDEI CTNAG 2 cut(s) 452, 734
BstDSI CCRYGG 1 cut(s) 480
BstEII GGTNACC 1 cut(s) 484
BstF5I GGATG 1 cut(s) 756
BstHHI GCGC 2 cut(s) 383, 445
BstKTI GATC 2 cut(s) 501, 555
BstMAI GTCTC 2 cut(s) 478, 776
BstMBI GATC 2 cut(s) 498, 552
BstMWI GCNNNNNNNGC 3 cut(s) 286, 389, 440
BstNI CCWGG 2 cut(s) 464, 560
BstPI GGTNACC 1 cut(s) 484
BstSCI CCNGG 3 cut(s) 129, 462, 558
BstV1I GCAGC 1 cut(s) 395
BstX2I RGATCY 2 cut(s) 498, 552
BstXI CCANNNNNNTGG 1 cut(s) 303
BstYI RGATCY 2 cut(s) 498, 552
BsuRI GGCC 3 cut(s) 189, 662, 758
BtgI CCRYGG 1 cut(s) 480
BtgZI GCGATG 1 cut(s) 431
BtsCI GGATG 1 cut(s) 756
BtsI GCAGTG 1 cut(s) 45
BtsIMutI CAGTG 1 cut(s) 45
Cac8I GCNNGC 2 cut(s) 87, 441
CfoI GCGC 2 cut(s) 383, 445
CseI GACGC 2 cut(s) 371, 460
Csp6I GTAC 2 cut(s) 265, 547
CviAII CATG 2 cut(s) 191, 481
CviQI GTAC 2 cut(s) 265, 547
DdeI CTNAG 2 cut(s) 452, 734
DpnI GATC 2 cut(s) 500, 554
DpnII GATC 2 cut(s) 498, 552
EaeI YGGCCR 2 cut(s) 187, 756
Eco130I CCWWGG 1 cut(s) 480
Eco147I AGGCCT 1 cut(s) 662
Eco24I GRGCYC 3 cut(s) 458, 570, 653
Eco31I GGTCTC 1 cut(s) 776
Eco91I GGTNACC 1 cut(s) 484
EcoO65I GGTNACC 1 cut(s) 484
EcoRII CCWGG 2 cut(s) 462, 558
EcoT14I CCWWGG 1 cut(s) 480
EcoT38I GRGCYC 3 cut(s) 458, 570, 653
ErhI CCWWGG 1 cut(s) 480
Esp3I CGTCTC 1 cut(s) 478
FaeI CATG 2 cut(s) 194, 484
FalI AAGNNNNNCTT 2 cut(s) 26, 58
FaqI GGGAC 1 cut(s) 296
FatI CATG 2 cut(s) 190, 480
FblI GTMKAC 1 cut(s) 225
Fnu4HI GCNGC 2 cut(s) 384, 525
FokI GGATG 1 cut(s) 763
FriOI GRGCYC 3 cut(s) 458, 570, 653
Fsp4HI GCNGC 2 cut(s) 384, 525
FspBI CTAG 2 cut(s) 92, 120
FspI TGCGCA 1 cut(s) 382
GlaI GCGC 2 cut(s) 382, 444
GluI GCNGC 2 cut(s) 384, 525
GsuI CTGGAG 1 cut(s) 542
HaeIII GGCC 3 cut(s) 189, 662, 758
HapII CCGG 3 cut(s) 131, 759, 775
HgaI GACGC 2 cut(s) 371, 460
HhaI GCGC 2 cut(s) 383, 445
Hin1I GRCGYC 1 cut(s) 471
Hin1II CATG 2 cut(s) 194, 484
Hin6I GCGC 2 cut(s) 381, 443
HinP1I GCGC 2 cut(s) 381, 443
HindIII AAGCTT 2 cut(s) 668, 731
HinfI GANTC 2 cut(s) 404, 680
HpaII CCGG 3 cut(s) 131, 759, 775
HphI GGTGA 2 cut(s) 285, 478
Hpy166II GTNNAC 1 cut(s) 226
Hpy188I TCNGA 4 cut(s) 184, 594, 655, 700
Hpy188III TCNNGA 1 cut(s) 496
Hpy8I GTNNAC 1 cut(s) 226
HpyAV CCTTC 4 cut(s) 331, 502, 673, 709
HpyCH4III ACNGT 2 cut(s) 217, 245
HpyCH4V TGCA 4 cut(s) 79, 150, 235, 289
HpyF10VI GCNNNNNNNGC 3 cut(s) 286, 389, 440
HpyF3I CTNAG 2 cut(s) 452, 734
Hsp92I GRCGYC 1 cut(s) 471
Hsp92II CATG 2 cut(s) 194, 484
HspAI GCGC 2 cut(s) 381, 443
Kzo9I GATC 2 cut(s) 498, 552
LmnI GCTCC 1 cut(s) 656
Lsp1109I GCAGC 1 cut(s) 395
LweI GCATC 1 cut(s) 454
MaeI CTAG 2 cut(s) 92, 120
MaeIII GTNAC 1 cut(s) 484
MalI GATC 2 cut(s) 500, 554
MboI GATC 2 cut(s) 498, 552
MboII GAAGA 4 cut(s) 116, 119, 365, 611
MflI RGATCY 2 cut(s) 498, 552
MhlI GDGCHC 3 cut(s) 458, 570, 653
MlsI TGGCCA 1 cut(s) 189
MluCI AATT 3 cut(s) 65, 110, 178
MluNI TGGCCA 1 cut(s) 189
MlyI GAGTC 2 cut(s) 413, 689
MmeI TCCRAC 3 cut(s) 236, 432, 678
MnlI CCTC 8 cut(s) 163, 265, 434, 487, 512, 546, 566, 705
Mox20I TGGCCA 1 cut(s) 189
MscI TGGCCA 1 cut(s) 189
Msp20I TGGCCA 1 cut(s) 189
MspI CCGG 3 cut(s) 131, 759, 775
MspR9I CCNGG 3 cut(s) 131, 464, 560
Mva1269I GAATGC 1 cut(s) 289
MvaI CCWGG 2 cut(s) 464, 560
MwoI GCNNNNNNNGC 3 cut(s) 286, 389, 440
NciI CCSGG 1 cut(s) 131
NcoI CCATGG 1 cut(s) 480
NdeII GATC 2 cut(s) 498, 552
NlaIII CATG 2 cut(s) 194, 484
NlaIV GGNNCC 2 cut(s) 652, 692
NmuCI GTSAC 1 cut(s) 484
NsbI TGCGCA 1 cut(s) 382
PceI AGGCCT 1 cut(s) 662
PctI GAATGC 1 cut(s) 289
PflFI GACNNNGTC 1 cut(s) 470
PfoI TCCNGGA 1 cut(s) 129
PkrI GCNGC 2 cut(s) 385, 526
PleI GAGTC 2 cut(s) 412, 688
PpsI GAGTC 2 cut(s) 412, 688
Psp6I CCWGG 2 cut(s) 462, 558
PspEI GGTNACC 1 cut(s) 484
PspGI CCWGG 2 cut(s) 462, 558
PspN4I GGNNCC 2 cut(s) 652, 692
PsuI RGATCY 2 cut(s) 498, 552
PsyI GACNNNGTC 1 cut(s) 470
RsaI GTAC 2 cut(s) 266, 548
RsaNI GTAC 2 cut(s) 265, 547
SatI GCNGC 2 cut(s) 384, 525
Sau3AI GATC 2 cut(s) 498, 552
SchI GAGTC 2 cut(s) 413, 689
ScrFI CCNGG 3 cut(s) 131, 464, 560
SduI GDGCHC 3 cut(s) 458, 570, 653
SetI ASST 6 cut(s) 375, 465, 564, 612, 672, 735
SfaNI GCATC 1 cut(s) 454
Sse9I AATT 3 cut(s) 65, 110, 178
SseBI AGGCCT 1 cut(s) 662
SsiI CCGC 4 cut(s) 489, 505, 510, 525
SspMI CTAG 2 cut(s) 92, 120
StuI AGGCCT 1 cut(s) 662
StyD4I CCNGG 3 cut(s) 129, 462, 558
StyI CCWWGG 1 cut(s) 480
TaaI ACNGT 2 cut(s) 217, 245
TaqI TCGA 1 cut(s) 495
TasI AATT 3 cut(s) 65, 110, 178
TauI GCSGC 1 cut(s) 527
TscAI CASTG 1 cut(s) 52
TseFI GTSAC 1 cut(s) 484
TseI GCWGC 1 cut(s) 383
Tsp45I GTSAC 1 cut(s) 484
TspDTI ATGAA 3 cut(s) 7, 20, 743
TspGWI ACGGA 1 cut(s) 309
TspRI CASTG 1 cut(s) 52
Tth111I GACNNNGTC 1 cut(s) 470
XapI RAATTY 1 cut(s) 178
XmiI GTMKAC 1 cut(s) 225
XspI CTAG 2 cut(s) 92, 120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.