RchiOBHm_Chr1g0337301

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_chinensis
1
OG0000108
Physical Location & Seq
Forward (+)
28966456 .. 28969175
2720 bp
Loading structure...
UTR
Exon/CDS
Intron
PRQ56521

Sequence Viewer

Length: 1635 bp
ATGGTTTCTTACGAGTATGTTCTCGGTGGAATGTTAGTTTCTTTGCTGGGCTCTGTTTTCTTCATGATCATCAGTTCTACTTTAGGAGGAAAGAAACAATTCAAGGTTTCAAGTGAAGTAAGGAGTAATGGGTTCGGAAACGGTGAGTTTCAGCCGGAAATGGAGGAAAAAAGTACTGATGTCGTCATTGTGGGTGCCGGAGTTGCCGGTGCAGCTCTTGCTTACACTCTTGCCAAGGAAGGACGACGTGTGCATGTAATAGAAAGAGACTTGAGTGAGCCAGATAGAATTGTTGGGGAGCTACTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTCGAGGATTGTGCAAATGAGTCAATTGATGCCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACTCTGTCTTATCCCTTGAAGAAATACAGTTCAGATGTGGCTGGGAGAAGTTTCCACAATGGCCGTTTTATTCAAAGAATGCGTGAAAAAATTGCAACTCTTTCAAATGTAAAATTGGAACAAGGATCAGTGACAACACTAATCGAGGAAAAGGGCATTGTCAAAGGGGTTATTTACAAGAACAAGGCTGGAGAGGAGCTGAGAACATATGCTCCCCTAACAGTTGTGTGTGATGGCTGCTTTTCAAATCTGCGAAAATCTCTCAGTGCTCCAAAGGTAACAATGGGTAAACCACATGTTGCTATTGACGTGCATGAGGGTTTTGATGGCAGGAGTGTTGAAAGTCCCTCTTGTTTTGTTGGTTTGATCTTGGAGAATTGTGATCTTCCACACGCAAATCATGGGCATGTCATATTGGGAGACCCTTCTCCCATCCTGTTTTATCCTATCAGTTCCACCGAGGTTCGCTGTTTGGTGGATGTACCTGGAACAAAAGTACCTTCAGTAGCTAGTGGTGAAATGGCCAACTATTTGAAAACAGTGGTGGCTCCTCAGGTTCCCCCACAGCTGTACAATGCTTTTATGGCCGCAGTAGAGAAAGGAAACATTAGATCCATGCAAAATAAAAGCATGGCTGCTAATCCTCTTCCTAGTCCTGGTGCAATTTTATTAGGGGATTCATTCAACATGAGGCATCCTTTAACAGGAGGAGGAATGACTGTGGCTCTTTCAGACATTGTTCTTCTCCGCGATCTTCTTAGACCCTTACATGATCTTGATGATGCACCGGCTTTGTGCAATTACCTAGAATCATTCTATACACTGCGTAAGCCTGTGTCATCTACCATAAACACATTGGCAGGTGCTTTGTACAAGGTGTTTTGTGCATCACCTGATCTGGCAAGACAGGAAATGCGTGAAGCCTGTTTCGGCTATTTGAGCCTTGGAGGCATCTGCTCCTATGGACCAGTATCTCTTCTCTCTGGTCTTAACCCTCGTCCATTACACTTGTTTCTCCATTTCTTTGCTGTTGCCATCTATGGTGTCGGCCGCTTACTGTTTCCATTCCCTTCACCTAAGCGCATGTGGCTTGGGTTTCAATTGATCTTGAGTGCATCAGGCATCATATTCCCGATCATAAAGGCTGAAGGAGTTAGACAGATGTTCTTTCCTGCCACAGTACCAGCATACTACAGATCTCCTCCTGTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

544

Amino Acids

59.15

Weight (kDa)

8.2

Isoelectric Point (pI)

45.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 59 - 390 4.4e-15 FAD binding domain
DAO PF01266 60 - 90 5.1e-08 FAD dependent oxidoreductase
NAD_binding_8 PF13450 63 - 89 2.1e-06 NAD(P)-binding Rossmann-like domain
SE PF08491 211 - 241 2e-06 Squalene epoxidase
SE PF08491 253 - 503 1.1e-103 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1271
Acc36I ACCTGC 1 cut(s) 1271
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 1 cut(s) 1170
AciI CCGC 3 cut(s) 1008, 1168, 1471
AclWI GGATC 2 cut(s) 553, 1026
AcoI YGGCCR 4 cut(s) 481, 942, 1005, 1468
AcuI CTGAAG 2 cut(s) 906, 1587
AfaI GTAC 6 cut(s) 175, 903, 918, 992, 1292, 1602
AfiI CCNNNNNNNGG 2 cut(s) 1076, 1124
AflIII ACRYGT 2 cut(s) 247, 715
AjiI CACGTC 2 cut(s) 248, 730
AjnI CCWGG 3 cut(s) 310, 904, 1075
AloI GAACNNNNNNTCC 2 cut(s) 616, 648
AluBI AGCT 5 cut(s) 215, 301, 619, 929, 988
AluI AGCT 5 cut(s) 215, 301, 619, 929, 988
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 3 cut(s) 261, 347, 834
AlwI GGATC 2 cut(s) 553, 1026
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 4 cut(s) 481, 942, 1005, 1468
ApeKI GCWGC 4 cut(s) 212, 307, 657, 1055
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 1503
AspS9I GGNCC 1 cut(s) 1385
AsuHPI GGTGA 4 cut(s) 155, 947, 1302, 1485
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 1385
AxyI CCTNAGG 1 cut(s) 972
BaeI ACNNNNGTAYC 2 cut(s) 900, 933
BalI TGGCCA 1 cut(s) 944
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 4 cut(s) 224, 319, 644, 1042
BccI CCATC 5 cut(s) 401, 647, 740, 860, 1463
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 3 cut(s) 312, 906, 1077
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 3 cut(s) 261, 347, 834
BfaI CTAG 3 cut(s) 930, 1071, 1226
BfmI CTRYAG 2 cut(s) 305, 1612
BfuAI ACCTGC 1 cut(s) 1271
BfuI GTATCC 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 1368
BglII AGATCT 1 cut(s) 1616
BisI GCNGC 6 cut(s) 213, 308, 658, 1008, 1056, 1471
BlsI GCNGC 6 cut(s) 214, 309, 659, 1009, 1057, 1472
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 3 cut(s) 312, 906, 1077
Bme18I GGWCC 1 cut(s) 1385
BmeT110I CYCGRG 1 cut(s) 344
BmgBI CACGTC 2 cut(s) 248, 730
BmgT120I GGNCC 1 cut(s) 1385
BmiI GGNNCC 3 cut(s) 196, 969, 978
BmrFI CCNGG 3 cut(s) 312, 906, 1077
BmsI GCATC 7 cut(s) 361, 1123, 1192, 1316, 1380, 1544, 1551
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 1 cut(s) 1497
BpuEI CTTGAG 2 cut(s) 292, 1549
BsaI GGTCTC 2 cut(s) 347, 834
BsaJI CCNNGG 4 cut(s) 234, 311, 879, 1363
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 2 cut(s) 1076, 1124
Bse118I RCCGGY 2 cut(s) 206, 1207
Bse1I ACTGG 1 cut(s) 1388
Bse21I CCTNAGG 1 cut(s) 972
BseBI CCWGG 3 cut(s) 312, 906, 1077
BseDI CCNNGG 4 cut(s) 234, 311, 879, 1363
BseGI GGATG 3 cut(s) 852, 904, 1114
BseLI CCNNNNNNNGG 2 cut(s) 1076, 1124
BseMII CTCAG 3 cut(s) 611, 697, 986
BseNI ACTGG 1 cut(s) 1388
BseRI GAGGAG 4 cut(s) 629, 960, 1143, 1611
BseX3I CGGCCG 1 cut(s) 1468
BseXI GCAGC 4 cut(s) 224, 319, 644, 1042
BseYI CCCAGC 2 cut(s) 46, 461
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 1170
Bsh1285I CGRYCG 1 cut(s) 1471
BshFI GGCC 4 cut(s) 483, 944, 1007, 1470
BshNI GGYRCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 1471
BsiHKAI GWGCWC 1 cut(s) 691
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 4 cut(s) 155, 198, 207, 1208
BslFI GGGAC 1 cut(s) 750
BslI CCNNNNNNNGG 2 cut(s) 1076, 1124
BsmAI GTCTC 3 cut(s) 261, 347, 834
BsmFI GGGAC 1 cut(s) 750
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 4 cut(s) 483, 944, 1007, 1470
Bso31I GGTCTC 2 cut(s) 347, 834
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 53, 691
Bsp1407I TGTACA 2 cut(s) 990, 1290
BspACI CCGC 3 cut(s) 1008, 1168, 1471
BspANI GGCC 4 cut(s) 483, 944, 1007, 1470
BspCNI CTCAG 3 cut(s) 612, 696, 985
BspFNI CGCG 1 cut(s) 1170
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 196, 969, 978
BspMAI CTGCAG 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 1271
BspPI GGATC 2 cut(s) 553, 1026
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 2 cut(s) 347, 834
BsrFI RCCGGY 2 cut(s) 206, 1207
BsrGI TGTACA 2 cut(s) 990, 1290
BsrI ACTGG 1 cut(s) 1388
BssAI RCCGGY 2 cut(s) 206, 1207
BssECI CCNNGG 4 cut(s) 234, 311, 879, 1363
BssT1I CCWWGG 2 cut(s) 234, 1363
Bst2UI CCWGG 3 cut(s) 312, 906, 1077
Bst4CI ACNGT 7 cut(s) 143, 449, 643, 961, 1141, 1479, 1600
Bst6I CTCTTC 2 cut(s) 1071, 1401
BstAPI GCANNNNNTGC 1 cut(s) 218
BstAUI TGTACA 2 cut(s) 990, 1290
BstDEI CTNAG 5 cut(s) 620, 683, 972, 1178, 1497
BstENI CCTNNNNNAGG 1 cut(s) 1122
BstF5I GGATG 3 cut(s) 852, 904, 1114
BstFNI CGCG 1 cut(s) 1170
BstHHI GCGC 1 cut(s) 1503
BstMAI GTCTC 3 cut(s) 261, 347, 834
BstMCI CGRYCG 1 cut(s) 1471
BstMWI GCNNNNNNNGC 8 cut(s) 203, 212, 218, 307, 1004, 1359, 1368, 1507
BstNI CCWGG 3 cut(s) 312, 906, 1077
BstNSI RCATGY 4 cut(s) 257, 719, 830, 1507
BstSCI CCNGG 3 cut(s) 310, 904, 1075
BstSFI CTRYAG 2 cut(s) 305, 1612
BstUI CGCG 1 cut(s) 1170
BstV1I GCAGC 4 cut(s) 224, 319, 644, 1042
BstX2I RGATCY 2 cut(s) 1031, 1616
BstYI RGATCY 2 cut(s) 1031, 1616
BstZI CGGCCG 1 cut(s) 1468
Bsu36I CCTNAGG 1 cut(s) 972
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 4 cut(s) 483, 944, 1007, 1470
BtrI CACGTC 2 cut(s) 248, 730
BtsCI GGATG 3 cut(s) 852, 904, 1114
BtsI GCAGTG 1 cut(s) 1241
BtsIMutI CAGTG 4 cut(s) 555, 691, 966, 1241
BveI ACCTGC 1 cut(s) 1271
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 1503
Cfr10I RCCGGY 2 cut(s) 206, 1207
Cfr13I GGNCC 1 cut(s) 1385
Csp6I GTAC 6 cut(s) 174, 902, 917, 991, 1291, 1601
CviQI GTAC 6 cut(s) 174, 902, 917, 991, 1291, 1601
DdeI CTNAG 5 cut(s) 620, 683, 972, 1178, 1497
EaeI YGGCCR 4 cut(s) 481, 942, 1005, 1468
EagI CGGCCG 1 cut(s) 1468
Eam1104I CTCTTC 2 cut(s) 1071, 1401
EarI CTCTTC 2 cut(s) 1071, 1401
EclXI CGGCCG 1 cut(s) 1468
Eco130I CCWWGG 2 cut(s) 234, 1363
Eco24I GRGCYC 1 cut(s) 53
Eco31I GGTCTC 2 cut(s) 347, 834
Eco32I GATATC 1 cut(s) 320
Eco47I GGWCC 1 cut(s) 1385
Eco52I CGGCCG 1 cut(s) 1468
Eco57I CTGAAG 2 cut(s) 906, 1587
Eco81I CCTNAGG 1 cut(s) 972
Eco88I CYCGRG 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 1122
EcoRII CCWGG 3 cut(s) 310, 904, 1075
EcoRV GATATC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 234, 1363
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 234, 1363
FalI AAGNNNNNCTT 2 cut(s) 754, 786
FaqI GGGAC 1 cut(s) 750
FauNDI CATATG 1 cut(s) 628
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 6 cut(s) 213, 308, 658, 1008, 1056, 1471
FokI GGATG 3 cut(s) 839, 911, 1101
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 6 cut(s) 213, 308, 658, 1008, 1056, 1471
FspBI CTAG 3 cut(s) 930, 1071, 1226
GlaI GCGC 1 cut(s) 1502
GluI GCNGC 6 cut(s) 213, 308, 658, 1008, 1056, 1471
GsaI CCCAGC 2 cut(s) 50, 465
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 4 cut(s) 483, 944, 1007, 1470
HapII CCGG 4 cut(s) 155, 198, 207, 1208
HhaI GCGC 1 cut(s) 1503
Hin6I GCGC 1 cut(s) 1501
HinP1I GCGC 1 cut(s) 1501
HinfI GANTC 3 cut(s) 362, 1097, 1229
HpaII CCGG 4 cut(s) 155, 198, 207, 1208
HphI GGTGA 4 cut(s) 155, 947, 1302, 1485
Hpy166II GTNNAC 1 cut(s) 710
Hpy188I TCNGA 3 cut(s) 137, 454, 1153
Hpy188III TCNNGA 5 cut(s) 64, 344, 1196, 1528, 1552
Hpy8I GTNNAC 1 cut(s) 710
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 6 cut(s) 233, 406, 855, 930, 1500, 1562
HpyCH4III ACNGT 7 cut(s) 143, 449, 643, 961, 1141, 1479, 1600
HpyCH4IV ACGT 2 cut(s) 247, 729
HpyF10VI GCNNNNNNNGC 8 cut(s) 203, 212, 218, 307, 1004, 1359, 1368, 1507
HpyF3I CTNAG 5 cut(s) 620, 683, 972, 1178, 1497
HpySE526I ACGT 2 cut(s) 247, 729
HspAI GCGC 1 cut(s) 1501
Ksp22I TGATCA 1 cut(s) 66
LmnI GCTCC 6 cut(s) 298, 616, 637, 694, 973, 1382
Lsp1109I GCAGC 4 cut(s) 224, 319, 644, 1042
LweI GCATC 7 cut(s) 361, 1123, 1192, 1316, 1380, 1544, 1551
MaeI CTAG 3 cut(s) 930, 1071, 1226
MaeII ACGT 2 cut(s) 247, 729
MaeIII GTNAC 2 cut(s) 550, 697
MboII GAAGA 7 cut(s) 52, 451, 797, 1058, 1154, 1166, 1388
MfeI CAATTG 2 cut(s) 366, 1520
MflI RGATCY 2 cut(s) 1031, 1616
MhlI GDGCHC 2 cut(s) 53, 691
MlsI TGGCCA 1 cut(s) 944
MluNI TGGCCA 1 cut(s) 944
MlyI GAGTC 1 cut(s) 371
Mox20I TGGCCA 1 cut(s) 944
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 944
MseI TTAA 3 cut(s) 1121, 1410, 1633
MslI CAYNNNNRTG 1 cut(s) 825
Msp20I TGGCCA 1 cut(s) 944
MspA1I CMGCKG 1 cut(s) 988
MspI CCGG 4 cut(s) 155, 198, 207, 1208
MspR9I CCNGG 3 cut(s) 312, 906, 1077
MunI CAATTG 2 cut(s) 366, 1520
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 3 cut(s) 312, 906, 1077
MvnI CGCG 1 cut(s) 1170
MwoI GCNNNNNNNGC 8 cut(s) 203, 212, 218, 307, 1004, 1359, 1368, 1507
NdeI CATATG 1 cut(s) 628
NlaIV GGNNCC 3 cut(s) 196, 969, 978
NmuCI GTSAC 1 cut(s) 550
NspI RCATGY 4 cut(s) 257, 719, 830, 1507
PaeR7I CTCGAG 1 cut(s) 344
PagI TCATGA 1 cut(s) 63
PaqCI CACCTGC 1 cut(s) 1271
PciI ACATGT 1 cut(s) 715
PctI GAATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 1097, 1229
PkrI GCNGC 6 cut(s) 214, 309, 659, 1009, 1057, 1472
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
PscI ACATGT 1 cut(s) 715
Psp6I CCWGG 3 cut(s) 310, 904, 1075
PspFI CCCAGC 2 cut(s) 46, 461
PspGI CCWGG 3 cut(s) 310, 904, 1075
PspN4I GGNNCC 3 cut(s) 196, 969, 978
PspPI GGNCC 1 cut(s) 1385
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 2 cut(s) 1031, 1616
PvuII CAGCTG 1 cut(s) 988
RsaI GTAC 6 cut(s) 175, 903, 918, 992, 1292, 1602
RsaNI GTAC 6 cut(s) 174, 902, 917, 991, 1291, 1601
RseI CAYNNNNRTG 1 cut(s) 825
SaqAI TTAA 3 cut(s) 1121, 1410, 1633
SatI GCNGC 6 cut(s) 213, 308, 658, 1008, 1056, 1471
Sau96I GGNCC 1 cut(s) 1385
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 312, 906, 1077
SduI GDGCHC 2 cut(s) 53, 691
SfaNI GCATC 7 cut(s) 361, 1123, 1192, 1316, 1380, 1544, 1551
SfcI CTRYAG 2 cut(s) 305, 1612
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 1385
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 825
SmlI CTYRAG 3 cut(s) 271, 344, 1528
SmoI CTYRAG 3 cut(s) 271, 344, 1528
SsiI CCGC 3 cut(s) 1008, 1168, 1471
SspMI CTAG 3 cut(s) 930, 1071, 1226
StyD4I CCNGG 3 cut(s) 310, 904, 1075
StyI CCWWGG 2 cut(s) 234, 1363
TaaI ACNGT 7 cut(s) 143, 449, 643, 961, 1141, 1479, 1600
TaiI ACGT 2 cut(s) 250, 732
TaqI TCGA 2 cut(s) 345, 564
TatI WGTACW 3 cut(s) 173, 990, 1290
TauI GCSGC 2 cut(s) 1010, 1473
TfiI GAWTC 2 cut(s) 1097, 1229
Tru1I TTAA 3 cut(s) 1121, 1410, 1633
Tru9I TTAA 3 cut(s) 1121, 1410, 1633
TscAI CASTG 4 cut(s) 555, 691, 966, 1248
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 4 cut(s) 212, 307, 657, 1055
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 3 cut(s) 52, 1089, 1619
TspRI CASTG 4 cut(s) 555, 691, 966, 1248
VpaK11BI GGWCC 1 cut(s) 1385
XagI CCTNNNNNAGG 1 cut(s) 1122
XceI RCATGY 4 cut(s) 257, 719, 830, 1507
XcmI CCANNNNNNNNNTGG 2 cut(s) 383, 1273
XhoI CTCGAG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 3 cut(s) 930, 1071, 1226
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.