FvH4_4g14040

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb4
OG0000108
Physical Location & Seq
Reverse (-)
17578268 .. 17580765
2498 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_4g14040.t1

Sequence Viewer

Length: 1302 bp
ATGATCATTAGTACTACTCTTGGTGGAAACAAAAAGGTCAAGTCTTTAAGTGGAGGAGTTAAGAGTAATGATGGGTTTGGAAACGGTGAGTTTCAGCCGGAAATGGAGGAGGAGAGAAGTACCGACGTCGTCATTGTCGGTGCCGGAGTTGCTGGTGCAGCTCTTGCTTACACTCTTGCCAAGGAAGGTCGTCGTGTGCATGTCATCGAAAGAGACTTGACCGAGCCAGACAGAATTGTTGGTGAGCTGTTGCAGCCTGGAGGTTATCTCAAGTCGATTGAGTTGGGTCTTGAGGATTGTGCAAATGAGTCAATTGATGCGCAGAAGGTGTTTGGTTATGCTGTTTACAAAGATGGCAAGGATACAAAACTGACTTATCCCTTGGAACAATATAGTTCAGATGTGGCTGGGAGAAGTTTCCACAATGGGCGTTTCATCCAAAGAATGCGCGAAAAAGCAACGACTCTATCAAATGTCAAATTGGAACAAGGATCAGTGACAACACTAATTGAAGAAAAAGGCATTGTCAAAGGGGTGATTTACAAGAACAAGGCTGGAGAGGAGATGAGAACATATGCTCCACTGACAATCTTGTGTGATGGCTGCTTTTCAAATCTGCGCAAGTCTCTCAGTGCACCAAAGATTCCCCCACAGCTGCACAATGCTTTTATGGCCGCAGTAGAGAAGGGAAACATCAGGACAATTCAAAACAGAAGCATGGCTGCTAATCCTGTCCCTACTCCTGGTGCGATTTTATTAGGTGATGCATTCAACATGAGGCATCCTTTAACAGGAGGAGGAATGACTGTTGCTCTTTCCGACATCGTTCTTCTCCGTGATCTTCTTAGACCCCTACGTGATCTCAATGATGCACCTGCTTTGTGCAATTACCTTGAATCATTCTCCACACTGCACAAGTGTGTGTCATCCACTATAAACACATTGGCAGGTGCTTTGTACAAGGTGTTTTGTGCATCGCCGGATCCGGCAAGACAGGAAACGCGTGAAGCATGTTTTGGCTATTTGAGCTTTGGAGGCATATGTTCATATGGACCAGTATCTCTGCTATCTGGTCCTAACCCTCGTCCACTGCACTTGTTTCTCCATTTCTTTGCTGTTGCCATCTATGGTGTCGGTCGCTTAATGCTTCTGTTCCCTTCACCAAAACGCATGTGGCTTGGGTTTCAATTGATGTTGAGTGCATCAGGCATCATATTCCCCATTATAAAGGGTGAAGGCGTTAGACAGATGTTCTTTCCTGCCACAGTGCCAGCGTATTACAGATCTCCTCCTGTCCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

434

Amino Acids

47.16

Weight (kDa)

8.87

Isoelectric Point (pI)

42.13

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 41 - 213 3.2e-12 FAD binding domain
DAO PF01266 42 - 72 4.9e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 42 - 71 8.9e-06 FAD binding domain
NAD_binding_8 PF13450 45 - 71 1.6e-06 NAD(P)-binding Rossmann-like domain
SE PF08491 212 - 392 1.1e-65 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1226
AarI CACCTGC 2 cut(s) 883, 938
AatII GACGTC 1 cut(s) 129
Acc16I TGCGCA 2 cut(s) 321, 620
Acc36I ACCTGC 2 cut(s) 883, 938
AccB1I GGYRCC 1 cut(s) 140
AccII CGCG 2 cut(s) 450, 1003
AciI CCGC 1 cut(s) 675
AclWI GGATC 3 cut(s) 499, 977, 990
AcoI YGGCCR 1 cut(s) 672
AcyI GRCGYC 1 cut(s) 126
AfaI GTAC 3 cut(s) 13, 121, 959
AfiI CCNNNNNNNGG 2 cut(s) 743, 791
AflIII ACRYGT 1 cut(s) 1001
AgsI TTSAA 6 cut(s) 512, 612, 707, 772, 896, 1187
AjnI CCWGG 2 cut(s) 256, 742
AjuI GAANNNNNNNTTGG 2 cut(s) 999, 1031
AleI CACNNNNGTG 1 cut(s) 918
AloI GAACNNNNNNTCC 2 cut(s) 562, 594
AluBI AGCT 4 cut(s) 161, 247, 655, 1029
AluI AGCT 4 cut(s) 161, 247, 655, 1029
Alw21I GWGCWC 1 cut(s) 637
Alw26I GTCTC 2 cut(s) 207, 630
Alw44I GTGCAC 1 cut(s) 633
AlwI GGATC 3 cut(s) 499, 977, 990
AoxI GGCC 1 cut(s) 672
ApaLI GTGCAC 1 cut(s) 633
ApeKI GCWGC 5 cut(s) 158, 253, 603, 655, 722
AspLEI GCGC 3 cut(s) 322, 450, 621
AspS9I GGNCC 2 cut(s) 1052, 1073
AsuHPI GGTGA 6 cut(s) 98, 254, 547, 773, 1152, 1244
AvaII GGWCC 2 cut(s) 1052, 1073
BaeGI GKGCMC 1 cut(s) 637
BamHI GGATCC 1 cut(s) 982
BanI GGYRCC 1 cut(s) 140
Bbv12I GWGCWC 1 cut(s) 637
BbvI GCAGC 5 cut(s) 170, 265, 590, 642, 709
BccI CCATC 4 cut(s) 65, 347, 593, 1130
BciT130I CCWGG 2 cut(s) 258, 744
BciVI GTATCC 1 cut(s) 355
BclI TGATCA 1 cut(s) 3
BcoDI GTCTC 2 cut(s) 207, 630
BfuAI ACCTGC 2 cut(s) 883, 938
BfuI GTATCC 1 cut(s) 355
BglII AGATCT 1 cut(s) 1283
BisI GCNGC 6 cut(s) 159, 254, 604, 656, 675, 723
BlsI GCNGC 6 cut(s) 160, 255, 605, 657, 676, 724
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 258, 744
Bme18I GGWCC 2 cut(s) 1052, 1073
BmgT120I GGNCC 2 cut(s) 1052, 1073
BmiI GGNNCC 2 cut(s) 142, 984
BmrFI CCNGG 2 cut(s) 258, 744
BmsI GCATC 7 cut(s) 307, 754, 790, 859, 983, 1211, 1218
BplI GAGNNNNNCTC 2 cut(s) 252, 284
BpmI CTGGAG 2 cut(s) 279, 576
BpuEI CTTGAG 2 cut(s) 254, 311
BsaAI YACGTR 1 cut(s) 857
BsaHI GRCGYC 1 cut(s) 126
BsaJI CCNNGG 2 cut(s) 180, 381
BsaXI ACNNNNNCTCC 2 cut(s) 562, 592
Bsc4I CCNNNNNNNGG 2 cut(s) 743, 791
Bse1I ACTGG 1 cut(s) 1055
BseBI CCWGG 2 cut(s) 258, 744
BseDI CCNNGG 2 cut(s) 180, 381
BseGI GGATG 3 cut(s) 435, 781, 926
BseLI CCNNNNNNNGG 2 cut(s) 743, 791
BseMII CTCAG 1 cut(s) 643
BseNI ACTGG 1 cut(s) 1055
BseRI GAGGAG 6 cut(s) 69, 122, 125, 575, 810, 1278
BseSI GKGCMC 1 cut(s) 637
BseXI GCAGC 5 cut(s) 170, 265, 590, 642, 709
BseYI CCCAGC 1 cut(s) 407
BsgI GTGCAG 4 cut(s) 177, 641, 896, 1076
Bsh1236I CGCG 2 cut(s) 450, 1003
Bsh1285I CGRYCG 1 cut(s) 1138
BshFI GGCC 1 cut(s) 674
BshNI GGYRCC 1 cut(s) 140
BsiEI CGRYCG 1 cut(s) 1138
BsiHKAI GWGCWC 1 cut(s) 637
BsiSI CCGG 4 cut(s) 98, 144, 980, 986
BslFI GGGAC 1 cut(s) 719
BslI CCNNNNNNNGG 2 cut(s) 743, 791
BsmAI GTCTC 2 cut(s) 207, 630
BsmFI GGGAC 1 cut(s) 719
BsmI GAATGC 2 cut(s) 450, 767
BsnI GGCC 1 cut(s) 674
Bsp1286I GDGCHC 1 cut(s) 637
Bsp1407I TGTACA 1 cut(s) 957
Bsp143I GATC 6 cut(s) 3, 491, 838, 859, 982, 1283
BspACI CCGC 1 cut(s) 675
BspANI GGCC 1 cut(s) 674
BspCNI CTCAG 1 cut(s) 642
BspFNI CGCG 2 cut(s) 450, 1003
BspLI GGNNCC 2 cut(s) 142, 984
BspMI ACCTGC 2 cut(s) 883, 938
BspPI GGATC 3 cut(s) 499, 977, 990
BspT107I GGYRCC 1 cut(s) 140
BsrGI TGTACA 1 cut(s) 957
BsrI ACTGG 1 cut(s) 1055
BssECI CCNNGG 2 cut(s) 180, 381
BssMI GATC 6 cut(s) 3, 491, 838, 859, 982, 1283
BssNI GRCGYC 1 cut(s) 126
BssT1I CCWWGG 2 cut(s) 180, 381
Bst2UI CCWGG 2 cut(s) 258, 744
Bst4CI ACNGT 3 cut(s) 86, 808, 1267
BstACI GRCGYC 1 cut(s) 126
BstAPI GCANNNNNTGC 1 cut(s) 164
BstAUI TGTACA 1 cut(s) 957
BstBAI YACGTR 1 cut(s) 857
BstC8I GCNNGC 1 cut(s) 1272
BstDEI CTNAG 2 cut(s) 629, 845
BstENI CCTNNNNNAGG 1 cut(s) 789
BstF5I GGATG 3 cut(s) 435, 781, 926
BstFNI CGCG 2 cut(s) 450, 1003
BstHHI GCGC 3 cut(s) 322, 450, 621
BstKTI GATC 6 cut(s) 6, 494, 841, 862, 985, 1286
BstMAI GTCTC 2 cut(s) 207, 630
BstMBI GATC 6 cut(s) 3, 491, 838, 859, 982, 1283
BstMCI CGRYCG 1 cut(s) 1138
BstMWI GCNNNNNNNGC 7 cut(s) 149, 158, 164, 253, 671, 1026, 1035
BstNI CCWGG 2 cut(s) 258, 744
BstNSI RCATGY 3 cut(s) 203, 1014, 1174
BstSCI CCNGG 2 cut(s) 256, 742
BstSLI GKGCMC 1 cut(s) 637
BstUI CGCG 2 cut(s) 450, 1003
BstV1I GCAGC 5 cut(s) 170, 265, 590, 642, 709
BstX2I RGATCY 2 cut(s) 982, 1283
BstYI RGATCY 2 cut(s) 982, 1283
BsuI GTATCC 1 cut(s) 355
BsuRI GGCC 1 cut(s) 674
BtgZI GCGATG 1 cut(s) 960
BtsCI GGATG 3 cut(s) 435, 781, 926
BtsI GCAGTG 2 cut(s) 908, 1088
BtsIMutI CAGTG 6 cut(s) 501, 581, 637, 908, 1088, 1272
BveI ACCTGC 2 cut(s) 883, 938
Cac8I GCNNGC 1 cut(s) 1272
CfoI GCGC 3 cut(s) 322, 450, 621
Cfr13I GGNCC 2 cut(s) 1052, 1073
Csp6I GTAC 3 cut(s) 12, 120, 958
CspCI CAANNNNNGTGG 2 cut(s) 1077, 1112
CviAII CATG 5 cut(s) 200, 718, 775, 1011, 1171
CviQI GTAC 3 cut(s) 12, 120, 958
DdeI CTNAG 2 cut(s) 629, 845
DpnI GATC 6 cut(s) 5, 493, 840, 861, 984, 1285
DpnII GATC 6 cut(s) 3, 491, 838, 859, 982, 1283
EaeI YGGCCR 1 cut(s) 672
Eco130I CCWWGG 2 cut(s) 180, 381
Eco47I GGWCC 2 cut(s) 1052, 1073
EcoNI CCTNNNNNAGG 1 cut(s) 789
EcoRII CCWGG 2 cut(s) 256, 742
EcoT14I CCWWGG 2 cut(s) 180, 381
EcoT22I ATGCAT 1 cut(s) 769
ErhI CCWWGG 2 cut(s) 180, 381
FaeI CATG 5 cut(s) 203, 721, 778, 1014, 1174
FaqI GGGAC 1 cut(s) 719
FatI CATG 5 cut(s) 199, 717, 774, 1010, 1170
FauNDI CATATG 3 cut(s) 574, 1040, 1048
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 6 cut(s) 159, 254, 604, 656, 675, 723
FokI GGATG 3 cut(s) 422, 768, 913
Fsp4HI GCNGC 6 cut(s) 159, 254, 604, 656, 675, 723
FspI TGCGCA 2 cut(s) 321, 620
GlaI GCGC 3 cut(s) 321, 449, 620
GluI GCNGC 6 cut(s) 159, 254, 604, 656, 675, 723
GsaI CCCAGC 1 cut(s) 411
GsuI CTGGAG 2 cut(s) 279, 576
HaeIII GGCC 1 cut(s) 674
HapII CCGG 4 cut(s) 98, 144, 980, 986
HhaI GCGC 3 cut(s) 322, 450, 621
Hin1I GRCGYC 1 cut(s) 126
Hin1II CATG 5 cut(s) 203, 721, 778, 1014, 1174
Hin6I GCGC 3 cut(s) 320, 448, 619
HinP1I GCGC 3 cut(s) 320, 448, 619
HinfI GANTC 4 cut(s) 308, 463, 643, 896
HpaII CCGG 4 cut(s) 98, 144, 980, 986
HphI GGTGA 6 cut(s) 98, 254, 547, 773, 1152, 1244
Hpy166II GTNNAC 3 cut(s) 346, 635, 1088
Hpy188I TCNGA 2 cut(s) 400, 820
Hpy188III TCNNGA 2 cut(s) 290, 697
Hpy8I GTNNAC 3 cut(s) 346, 635, 1088
Hpy99I CGWCG 3 cut(s) 128, 131, 195
HpyAV CCTTC 5 cut(s) 179, 319, 679, 1167, 1229
HpyCH4III ACNGT 3 cut(s) 86, 808, 1267
HpyCH4IV ACGT 2 cut(s) 126, 856
HpyF10VI GCNNNNNNNGC 7 cut(s) 149, 158, 164, 253, 671, 1026, 1035
HpyF3I CTNAG 2 cut(s) 629, 845
HpySE526I ACGT 2 cut(s) 126, 856
Hsp92I GRCGYC 1 cut(s) 126
Hsp92II CATG 5 cut(s) 203, 721, 778, 1014, 1174
HspAI GCGC 3 cut(s) 320, 448, 619
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 6 cut(s) 3, 491, 838, 859, 982, 1283
LmnI GCTCC 1 cut(s) 583
Lsp1109I GCAGC 5 cut(s) 170, 265, 590, 642, 709
LweI GCATC 7 cut(s) 307, 754, 790, 859, 983, 1211, 1218
MaeII ACGT 2 cut(s) 126, 856
MaeIII GTNAC 1 cut(s) 496
MalI GATC 6 cut(s) 5, 493, 840, 861, 984, 1285
MboI GATC 6 cut(s) 3, 491, 838, 859, 982, 1283
MboII GAAGA 3 cut(s) 524, 821, 833
MfeI CAATTG 2 cut(s) 312, 1187
MflI RGATCY 2 cut(s) 982, 1283
MhlI GDGCHC 1 cut(s) 637
MluCI AATT 7 cut(s) 234, 312, 479, 507, 702, 886, 1187
MluI ACGCGT 1 cut(s) 1001
MlyI GAGTC 2 cut(s) 317, 457
MmeI TCCRAC 1 cut(s) 843
Mph1103I ATGCAT 1 cut(s) 769
MseI TTAA 4 cut(s) 47, 60, 788, 1142
MslI CAYNNNNRTG 1 cut(s) 918
MspA1I CMGCKG 1 cut(s) 655
MspI CCGG 4 cut(s) 98, 144, 980, 986
MspR9I CCNGG 2 cut(s) 258, 744
MunI CAATTG 2 cut(s) 312, 1187
Mva1269I GAATGC 2 cut(s) 450, 767
MvaI CCWGG 2 cut(s) 258, 744
MvnI CGCG 2 cut(s) 450, 1003
MwoI GCNNNNNNNGC 7 cut(s) 149, 158, 164, 253, 671, 1026, 1035
NdeI CATATG 3 cut(s) 574, 1040, 1048
NdeII GATC 6 cut(s) 3, 491, 838, 859, 982, 1283
NlaIII CATG 5 cut(s) 203, 721, 778, 1014, 1174
NlaIV GGNNCC 2 cut(s) 142, 984
NmuCI GTSAC 1 cut(s) 496
NsbI TGCGCA 2 cut(s) 321, 620
NsiI ATGCAT 1 cut(s) 769
NspI RCATGY 3 cut(s) 203, 1014, 1174
OliI CACNNNNGTG 1 cut(s) 918
PaqCI CACCTGC 2 cut(s) 883, 938
PctI GAATGC 2 cut(s) 450, 767
PfeI GAWTC 2 cut(s) 643, 896
PflFI GACNNNGTC 1 cut(s) 128
PkrI GCNGC 6 cut(s) 160, 255, 605, 657, 676, 724
PleI GAGTC 2 cut(s) 316, 457
PpsI GAGTC 2 cut(s) 316, 457
Ppu21I YACGTR 1 cut(s) 857
PsiI TTATAA 1 cut(s) 1226
Psp6I CCWGG 2 cut(s) 256, 742
PspFI CCCAGC 1 cut(s) 407
PspGI CCWGG 2 cut(s) 256, 742
PspN4I GGNNCC 2 cut(s) 142, 984
PspPI GGNCC 2 cut(s) 1052, 1073
PsuI RGATCY 2 cut(s) 982, 1283
PsyI GACNNNGTC 1 cut(s) 128
PvuII CAGCTG 1 cut(s) 655
RsaI GTAC 3 cut(s) 13, 121, 959
RsaNI GTAC 3 cut(s) 12, 120, 958
RseI CAYNNNNRTG 1 cut(s) 918
SaqAI TTAA 4 cut(s) 47, 60, 788, 1142
SatI GCNGC 6 cut(s) 159, 254, 604, 656, 675, 723
Sau3AI GATC 6 cut(s) 3, 491, 838, 859, 982, 1283
Sau96I GGNCC 2 cut(s) 1052, 1073
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 2 cut(s) 317, 457
ScrFI CCNGG 2 cut(s) 258, 744
SduI GDGCHC 1 cut(s) 637
SfaNI GCATC 7 cut(s) 307, 754, 790, 859, 983, 1211, 1218
SinI GGWCC 2 cut(s) 1052, 1073
SmiMI CAYNNNNRTG 1 cut(s) 918
SmlI CTYRAG 2 cut(s) 269, 290
SmoI CTYRAG 2 cut(s) 269, 290
Sse9I AATT 7 cut(s) 234, 312, 479, 507, 702, 886, 1187
SsiI CCGC 1 cut(s) 675
StyD4I CCNGG 2 cut(s) 256, 742
StyI CCWWGG 2 cut(s) 180, 381
TaaI ACNGT 3 cut(s) 86, 808, 1267
TaiI ACGT 2 cut(s) 129, 859
TaqI TCGA 2 cut(s) 207, 275
TaqII GACCGA 2 cut(s) 236, 1124
TasI AATT 7 cut(s) 234, 312, 479, 507, 702, 886, 1187
TatI WGTACW 2 cut(s) 11, 957
TauI GCSGC 1 cut(s) 677
TfiI GAWTC 2 cut(s) 643, 896
Tru1I TTAA 4 cut(s) 47, 60, 788, 1142
Tru9I TTAA 4 cut(s) 47, 60, 788, 1142
TscAI CASTG 6 cut(s) 501, 588, 637, 915, 1095, 1272
TseFI GTSAC 1 cut(s) 496
TseI GCWGC 5 cut(s) 158, 253, 603, 655, 722
Tsp45I GTSAC 1 cut(s) 496
TspDTI ATGAA 2 cut(s) 424, 1035
TspGWI ACGGA 1 cut(s) 824
TspRI CASTG 6 cut(s) 501, 588, 637, 915, 1095, 1272
Tth111I GACNNNGTC 1 cut(s) 128
VneI GTGCAC 1 cut(s) 633
VpaK11BI GGWCC 2 cut(s) 1052, 1073
XagI CCTNNNNNAGG 1 cut(s) 789
XceI RCATGY 3 cut(s) 203, 1014, 1174
XcmI CCANNNNNNNNNTGG 1 cut(s) 1170
ZraI GACGTC 1 cut(s) 127
ZrmI AGTACT 1 cut(s) 13
Zsp2I ATGCAT 1 cut(s) 769
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.