squalene
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SE | PF08491 | 1 - 190 | 6.9e-79 | Squalene epoxidase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AciI | CCGC | 4 cut(s) | 71, 307, 381, 532 |
| AclWI | GGATC | 1 cut(s) | 240 |
| AcoI | YGGCCR | 1 cut(s) | 529 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 137, 185 |
| AgsI | TTSAA | 4 cut(s) | 16, 166, 259, 441 |
| AjnI | CCWGG | 1 cut(s) | 136 |
| AluBI | AGCT | 2 cut(s) | 49, 119 |
| AluI | AGCT | 2 cut(s) | 49, 119 |
| Alw26I | GTCTC | 2 cut(s) | 166, 235 |
| AlwI | GGATC | 1 cut(s) | 240 |
| AoxI | GGCC | 1 cut(s) | 529 |
| ApeKI | GCWGC | 2 cut(s) | 68, 119 |
| AspLEI | GCGC | 1 cut(s) | 349 |
| AspS9I | GGNCC | 1 cut(s) | 446 |
| AvaII | GGWCC | 1 cut(s) | 446 |
| AxyI | CCTNAGG | 1 cut(s) | 33 |
| BbvI | GCAGC | 2 cut(s) | 80, 106 |
| BccI | CCATC | 1 cut(s) | 51 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 251, 285 |
| BciT130I | CCWGG | 1 cut(s) | 138 |
| BcoDI | GTCTC | 2 cut(s) | 166, 235 |
| BfaI | CTAG | 2 cut(s) | 65, 579 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 429 |
| BisI | GCNGC | 3 cut(s) | 69, 120, 532 |
| BlsI | GCNGC | 3 cut(s) | 70, 121, 533 |
| Bme1390I | CCNGG | 1 cut(s) | 138 |
| Bme18I | GGWCC | 1 cut(s) | 446 |
| BmgT120I | GGNCC | 1 cut(s) | 446 |
| BmiI | GGNNCC | 2 cut(s) | 30, 39 |
| BmrFI | CCNGG | 1 cut(s) | 138 |
| BmsI | GCATC | 5 cut(s) | 148, 275, 377, 441, 605 |
| BsaI | GGTCTC | 1 cut(s) | 235 |
| BsaJI | CCNNGG | 1 cut(s) | 424 |
| BsaWI | WCCGGW | 1 cut(s) | 464 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 137, 185 |
| Bse118I | RCCGGY | 1 cut(s) | 341 |
| Bse21I | CCTNAGG | 1 cut(s) | 33 |
| BseBI | CCWGG | 1 cut(s) | 138 |
| BseDI | CCNNGG | 1 cut(s) | 424 |
| BseGI | GGATG | 2 cut(s) | 163, 175 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 137, 185 |
| BseMII | CTCAG | 3 cut(s) | 20, 47, 230 |
| BseRI | GAGGAG | 2 cut(s) | 21, 204 |
| BseX3I | CGGCCG | 1 cut(s) | 529 |
| BseXI | GCAGC | 2 cut(s) | 80, 106 |
| BseYI | CCCAGC | 1 cut(s) | 664 |
| Bsh1285I | CGRYCG | 1 cut(s) | 532 |
| BshFI | GGCC | 1 cut(s) | 531 |
| BsiEI | CGRYCG | 1 cut(s) | 532 |
| BsiSI | CCGG | 2 cut(s) | 342, 465 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 137, 185 |
| BsmAI | GTCTC | 2 cut(s) | 166, 235 |
| BsnI | GGCC | 1 cut(s) | 531 |
| Bso31I | GGTCTC | 1 cut(s) | 235 |
| Bsp143I | GATC | 2 cut(s) | 232, 585 |
| BspACI | CCGC | 4 cut(s) | 71, 307, 381, 532 |
| BspANI | GGCC | 1 cut(s) | 531 |
| BspCNI | CTCAG | 3 cut(s) | 19, 46, 231 |
| BspLI | GGNNCC | 2 cut(s) | 30, 39 |
| BspPI | GGATC | 1 cut(s) | 240 |
| BspTNI | GGTCTC | 1 cut(s) | 235 |
| BsrFI | RCCGGY | 1 cut(s) | 341 |
| BssAI | RCCGGY | 1 cut(s) | 341 |
| BssECI | CCNNGG | 1 cut(s) | 424 |
| BssMI | GATC | 2 cut(s) | 232, 585 |
| BssT1I | CCWWGG | 1 cut(s) | 424 |
| Bst2UI | CCWGG | 1 cut(s) | 138 |
| Bst4CI | ACNGT | 2 cut(s) | 22, 202 |
| BstC8I | GCNNGC | 3 cut(s) | 113, 117, 311 |
| BstDEI | CTNAG | 5 cut(s) | 6, 33, 227, 239, 248 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 183 |
| BstF5I | GGATG | 2 cut(s) | 163, 175 |
| BstHHI | GCGC | 1 cut(s) | 349 |
| BstKTI | GATC | 2 cut(s) | 235, 588 |
| BstMAI | GTCTC | 2 cut(s) | 166, 235 |
| BstMBI | GATC | 2 cut(s) | 232, 585 |
| BstMCI | CGRYCG | 1 cut(s) | 532 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 65, 429 |
| BstNI | CCWGG | 1 cut(s) | 138 |
| BstNSI | RCATGY | 3 cut(s) | 115, 408, 722 |
| BstSCI | CCNGG | 1 cut(s) | 136 |
| BstV1I | GCAGC | 2 cut(s) | 80, 106 |
| BstX2I | RGATCY | 1 cut(s) | 232 |
| BstYI | RGATCY | 1 cut(s) | 232 |
| BstZI | CGGCCG | 1 cut(s) | 529 |
| Bsu36I | CCTNAGG | 1 cut(s) | 33 |
| BsuRI | GGCC | 1 cut(s) | 531 |
| BtgZI | GCGATG | 1 cut(s) | 354 |
| BtsCI | GGATG | 2 cut(s) | 163, 175 |
| Cac8I | GCNNGC | 3 cut(s) | 113, 117, 311 |
| CfoI | GCGC | 1 cut(s) | 349 |
| Cfr10I | RCCGGY | 1 cut(s) | 341 |
| Cfr13I | GGNCC | 1 cut(s) | 446 |
| CseI | GACGC | 1 cut(s) | 272 |
| CviAII | CATG | 4 cut(s) | 112, 169, 405, 719 |
| DdeI | CTNAG | 5 cut(s) | 6, 33, 227, 239, 248 |
| DpnI | GATC | 2 cut(s) | 234, 587 |
| DpnII | GATC | 2 cut(s) | 232, 585 |
| EaeI | YGGCCR | 1 cut(s) | 529 |
| EagI | CGGCCG | 1 cut(s) | 529 |
| EclXI | CGGCCG | 1 cut(s) | 529 |
| Eco130I | CCWWGG | 1 cut(s) | 424 |
| Eco31I | GGTCTC | 1 cut(s) | 235 |
| Eco47I | GGWCC | 1 cut(s) | 446 |
| Eco52I | CGGCCG | 1 cut(s) | 529 |
| Eco81I | CCTNAGG | 1 cut(s) | 33 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 183 |
| EcoRII | CCWGG | 1 cut(s) | 136 |
| EcoT14I | CCWWGG | 1 cut(s) | 424 |
| ErhI | CCWWGG | 1 cut(s) | 424 |
| FaeI | CATG | 4 cut(s) | 115, 172, 408, 722 |
| FatI | CATG | 4 cut(s) | 111, 168, 404, 718 |
| FauI | CCCGC | 1 cut(s) | 388 |
| Fnu4HI | GCNGC | 3 cut(s) | 69, 120, 532 |
| FokI | GGATG | 2 cut(s) | 162, 170 |
| Fsp4HI | GCNGC | 3 cut(s) | 69, 120, 532 |
| FspBI | CTAG | 2 cut(s) | 65, 579 |
| GlaI | GCGC | 1 cut(s) | 348 |
| GluI | GCNGC | 3 cut(s) | 69, 120, 532 |
| GsaI | CCCAGC | 1 cut(s) | 668 |
| HaeIII | GGCC | 1 cut(s) | 531 |
| HapII | CCGG | 2 cut(s) | 342, 465 |
| HgaI | GACGC | 1 cut(s) | 272 |
| HhaI | GCGC | 1 cut(s) | 349 |
| Hin1II | CATG | 4 cut(s) | 115, 172, 408, 722 |
| Hin6I | GCGC | 1 cut(s) | 347 |
| HinP1I | GCGC | 1 cut(s) | 347 |
| HinfI | GANTC | 5 cut(s) | 84, 525, 541, 603, 699 |
| HpaII | CCGG | 2 cut(s) | 342, 465 |
| Hpy188I | TCNGA | 3 cut(s) | 92, 214, 240 |
| Hpy188III | TCNNGA | 2 cut(s) | 600, 613 |
| Hpy99I | CGWCG | 1 cut(s) | 266 |
| HpyAV | CCTTC | 1 cut(s) | 623 |
| HpyCH4III | ACNGT | 2 cut(s) | 22, 202 |
| HpyCH4V | TGCA | 5 cut(s) | 100, 143, 368, 596, 656 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 65, 429 |
| HpyF3I | CTNAG | 5 cut(s) | 6, 33, 227, 239, 248 |
| Hsp92II | CATG | 4 cut(s) | 115, 172, 408, 722 |
| HspAI | GCGC | 1 cut(s) | 347 |
| Kzo9I | GATC | 2 cut(s) | 232, 585 |
| LmnI | GCTCC | 2 cut(s) | 34, 127 |
| Lsp1109I | GCAGC | 2 cut(s) | 80, 106 |
| LweI | GCATC | 5 cut(s) | 148, 275, 377, 441, 605 |
| MaeI | CTAG | 2 cut(s) | 65, 579 |
| MalI | GATC | 2 cut(s) | 234, 587 |
| MboI | GATC | 2 cut(s) | 232, 585 |
| MboII | GAAGA | 2 cut(s) | 215, 227 |
| MflI | RGATCY | 1 cut(s) | 232 |
| MluCI | AATT | 1 cut(s) | 144 |
| MlyI | GAGTC | 1 cut(s) | 534 |
| MnlI | CCTC | 6 cut(s) | 42, 182, 185, 422, 486, 693 |
| MseI | TTAA | 5 cut(s) | 53, 182, 471, 621, 727 |
| MspA1I | CMGCKG | 2 cut(s) | 71, 119 |
| MspI | CCGG | 2 cut(s) | 342, 465 |
| MspR9I | CCNGG | 1 cut(s) | 138 |
| MvaI | CCWGG | 1 cut(s) | 138 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 65, 429 |
| NdeII | GATC | 2 cut(s) | 232, 585 |
| NlaIII | CATG | 4 cut(s) | 115, 172, 408, 722 |
| NlaIV | GGNNCC | 2 cut(s) | 30, 39 |
| NspI | RCATGY | 3 cut(s) | 115, 408, 722 |
| PaeI | GCATGC | 1 cut(s) | 115 |
| PfeI | GAWTC | 4 cut(s) | 84, 541, 603, 699 |
| PkrI | GCNGC | 3 cut(s) | 70, 121, 533 |
| PleI | GAGTC | 1 cut(s) | 533 |
| PpsI | GAGTC | 1 cut(s) | 533 |
| Psp6I | CCWGG | 1 cut(s) | 136 |
| PspFI | CCCAGC | 1 cut(s) | 664 |
| PspGI | CCWGG | 1 cut(s) | 136 |
| PspN4I | GGNNCC | 2 cut(s) | 30, 39 |
| PspPI | GGNCC | 1 cut(s) | 446 |
| PsuI | RGATCY | 1 cut(s) | 232 |
| PvuII | CAGCTG | 1 cut(s) | 119 |
| SaqAI | TTAA | 5 cut(s) | 53, 182, 471, 621, 727 |
| SatI | GCNGC | 3 cut(s) | 69, 120, 532 |
| Sau3AI | GATC | 2 cut(s) | 232, 585 |
| Sau96I | GGNCC | 1 cut(s) | 446 |
| SchI | GAGTC | 1 cut(s) | 534 |
| ScrFI | CCNGG | 1 cut(s) | 138 |
| SetI | ASST | 4 cut(s) | 39, 51, 121, 360 |
| SfaNI | GCATC | 5 cut(s) | 148, 275, 377, 441, 605 |
| SinI | GGWCC | 1 cut(s) | 446 |
| SphI | GCATGC | 1 cut(s) | 115 |
| Sse9I | AATT | 1 cut(s) | 144 |
| SsiI | CCGC | 4 cut(s) | 71, 307, 381, 532 |
| SspMI | CTAG | 2 cut(s) | 65, 579 |
| StyD4I | CCNGG | 1 cut(s) | 136 |
| StyI | CCWWGG | 1 cut(s) | 424 |
| TaaI | ACNGT | 2 cut(s) | 22, 202 |
| TasI | AATT | 1 cut(s) | 144 |
| TauI | GCSGC | 1 cut(s) | 534 |
| TfiI | GAWTC | 4 cut(s) | 84, 541, 603, 699 |
| Tru1I | TTAA | 5 cut(s) | 53, 182, 471, 621, 727 |
| Tru9I | TTAA | 5 cut(s) | 53, 182, 471, 621, 727 |
| TseI | GCWGC | 2 cut(s) | 68, 119 |
| TspDTI | ATGAA | 1 cut(s) | 680 |
| TspGWI | ACGGA | 1 cut(s) | 577 |
| VpaK11BI | GGWCC | 1 cut(s) | 446 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 183 |
| XceI | RCATGY | 3 cut(s) | 115, 408, 722 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 564 |
| XspI | CTAG | 2 cut(s) | 65, 579 |