squalene
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| Acc16I | TGCGCA | 1 cut(s) | 200 |
| AccII | CGCG | 1 cut(s) | 631 |
| AciI | CCGC | 1 cut(s) | 629 |
| AclWI | GGATC | 1 cut(s) | 296 |
| AcuI | CTGAAG | 1 cut(s) | 366 |
| AfaI | GTAC | 2 cut(s) | 363, 378 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 536, 584 |
| AgsI | TTSAA | 4 cut(s) | 192, 227, 415, 565 |
| AjnI | CCWGG | 2 cut(s) | 364, 535 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 142, 174 |
| AluBI | AGCT | 4 cut(s) | 34, 271, 389, 448 |
| AluI | AGCT | 4 cut(s) | 34, 271, 389, 448 |
| Alw21I | GWGCWC | 1 cut(s) | 217 |
| Alw44I | GTGCAC | 1 cut(s) | 213 |
| AlwI | GGATC | 1 cut(s) | 296 |
| ApaLI | GTGCAC | 1 cut(s) | 213 |
| ApeKI | GCWGC | 5 cut(s) | 34, 183, 428, 448, 515 |
| AspLEI | GCGC | 1 cut(s) | 201 |
| AsuHPI | GGTGA | 1 cut(s) | 407 |
| BaeGI | GKGCMC | 1 cut(s) | 217 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 360, 393 |
| Bbv12I | GWGCWC | 1 cut(s) | 217 |
| BbvI | GCAGC | 5 cut(s) | 21, 170, 415, 435, 502 |
| BccI | CCATC | 2 cut(s) | 173, 335 |
| BciT130I | CCWGG | 2 cut(s) | 366, 537 |
| BfaI | CTAG | 1 cut(s) | 473 |
| BisI | GCNGC | 5 cut(s) | 35, 184, 429, 449, 516 |
| BlsI | GCNGC | 5 cut(s) | 36, 185, 430, 450, 517 |
| Bme1390I | CCNGG | 2 cut(s) | 366, 537 |
| BmiI | GGNNCC | 1 cut(s) | 370 |
| BmrFI | CCNGG | 2 cut(s) | 366, 537 |
| BmsI | GCATC | 3 cut(s) | 321, 547, 583 |
| BpmI | CTGGAG | 1 cut(s) | 156 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 142, 172 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 536, 584 |
| BseBI | CCWGG | 2 cut(s) | 366, 537 |
| BseGI | GGATG | 5 cut(s) | 11, 120, 364, 562, 574 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 536, 584 |
| BseMII | CTCAG | 2 cut(s) | 223, 423 |
| BseRI | GAGGAG | 2 cut(s) | 155, 603 |
| BseSI | GKGCMC | 1 cut(s) | 217 |
| BseXI | GCAGC | 5 cut(s) | 21, 170, 415, 435, 502 |
| BsgI | GTGCAG | 1 cut(s) | 434 |
| Bsh1236I | CGCG | 1 cut(s) | 631 |
| BsiHKAI | GWGCWC | 1 cut(s) | 217 |
| BslFI | GGGAC | 2 cut(s) | 216, 512 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 536, 584 |
| BsmFI | GGGAC | 2 cut(s) | 216, 512 |
| BsmI | GAATGC | 1 cut(s) | 560 |
| Bsp1286I | GDGCHC | 1 cut(s) | 217 |
| Bsp143I | GATC | 4 cut(s) | 71, 252, 301, 632 |
| BspACI | CCGC | 1 cut(s) | 629 |
| BspCNI | CTCAG | 2 cut(s) | 222, 424 |
| BspFNI | CGCG | 1 cut(s) | 631 |
| BspLI | GGNNCC | 1 cut(s) | 370 |
| BspPI | GGATC | 1 cut(s) | 296 |
| BssMI | GATC | 4 cut(s) | 71, 252, 301, 632 |
| Bst2UI | CCWGG | 2 cut(s) | 366, 537 |
| Bst4CI | ACNGT | 1 cut(s) | 266 |
| BstDEI | CTNAG | 3 cut(s) | 209, 432, 639 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 582 |
| BstF5I | GGATG | 5 cut(s) | 11, 120, 364, 562, 574 |
| BstFNI | CGCG | 1 cut(s) | 631 |
| BstHHI | GCGC | 1 cut(s) | 201 |
| BstKTI | GATC | 4 cut(s) | 74, 255, 304, 635 |
| BstMBI | GATC | 4 cut(s) | 71, 252, 301, 632 |
| BstMWI | GCNNNNNNNGC | 1 cut(s) | 183 |
| BstNI | CCWGG | 2 cut(s) | 366, 537 |
| BstNSI | RCATGY | 1 cut(s) | 281 |
| BstSCI | CCNGG | 2 cut(s) | 364, 535 |
| BstSLI | GKGCMC | 1 cut(s) | 217 |
| BstUI | CGCG | 1 cut(s) | 631 |
| BstV1I | GCAGC | 5 cut(s) | 21, 170, 415, 435, 502 |
| BstX2I | RGATCY | 1 cut(s) | 301 |
| BstYI | RGATCY | 1 cut(s) | 301 |
| BtgZI | GCGATG | 1 cut(s) | 192 |
| BtsCI | GGATG | 5 cut(s) | 11, 120, 364, 562, 574 |
| BtsIMutI | CAGTG | 2 cut(s) | 81, 217 |
| CfoI | GCGC | 1 cut(s) | 201 |
| Csp6I | GTAC | 2 cut(s) | 362, 377 |
| CviAII | CATG | 4 cut(s) | 278, 287, 511, 568 |
| CviQI | GTAC | 2 cut(s) | 362, 377 |
| DdeI | CTNAG | 3 cut(s) | 209, 432, 639 |
| DpnI | GATC | 4 cut(s) | 73, 254, 303, 634 |
| DpnII | GATC | 4 cut(s) | 71, 252, 301, 632 |
| Eco57I | CTGAAG | 1 cut(s) | 366 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 582 |
| EcoRII | CCWGG | 2 cut(s) | 364, 535 |
| EcoT22I | ATGCAT | 1 cut(s) | 562 |
| FaeI | CATG | 4 cut(s) | 281, 290, 514, 571 |
| FaiI | YATR | 8 cut(s) | 154, 156, 279, 288, 422, 464, 512, 569 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 220, 252 |
| FaqI | GGGAC | 2 cut(s) | 216, 512 |
| FatI | CATG | 4 cut(s) | 277, 286, 510, 567 |
| FauNDI | CATATG | 1 cut(s) | 154 |
| Fnu4HI | GCNGC | 5 cut(s) | 35, 184, 429, 449, 516 |
| FokI | GGATG | 4 cut(s) | 127, 371, 561, 569 |
| Fsp4HI | GCNGC | 5 cut(s) | 35, 184, 429, 449, 516 |
| FspBI | CTAG | 1 cut(s) | 473 |
| FspI | TGCGCA | 1 cut(s) | 200 |
| GlaI | GCGC | 1 cut(s) | 200 |
| GluI | GCNGC | 5 cut(s) | 35, 184, 429, 449, 516 |
| GsuI | CTGGAG | 1 cut(s) | 156 |
| HhaI | GCGC | 1 cut(s) | 201 |
| Hin1II | CATG | 4 cut(s) | 281, 290, 514, 571 |
| Hin6I | GCGC | 1 cut(s) | 199 |
| HinP1I | GCGC | 1 cut(s) | 199 |
| HinfI | GANTC | 2 cut(s) | 436, 599 |
| HphI | GGTGA | 1 cut(s) | 407 |
| Hpy166II | GTNNAC | 1 cut(s) | 215 |
| Hpy188I | TCNGA | 2 cut(s) | 491, 614 |
| Hpy8I | GTNNAC | 1 cut(s) | 215 |
| HpyAV | CCTTC | 3 cut(s) | 214, 315, 390 |
| HpyCH4III | ACNGT | 1 cut(s) | 266 |
| HpyCH4V | TGCA | 7 cut(s) | 37, 215, 281, 451, 499, 542, 560 |
| HpyF10VI | GCNNNNNNNGC | 1 cut(s) | 183 |
| HpyF3I | CTNAG | 3 cut(s) | 209, 432, 639 |
| Hsp92II | CATG | 4 cut(s) | 281, 290, 514, 571 |
| HspAI | GCGC | 1 cut(s) | 199 |
| Kzo9I | GATC | 4 cut(s) | 71, 252, 301, 632 |
| LmnI | GCTCC | 1 cut(s) | 163 |
| LpnPI | CCDG | 8 cut(s) | 120, 351, 378, 522, 537, 549, 570, 588 |
| Lsp1109I | GCAGC | 5 cut(s) | 21, 170, 415, 435, 502 |
| LweI | GCATC | 3 cut(s) | 321, 547, 583 |
| MaeI | CTAG | 1 cut(s) | 473 |
| MaeIII | GTNAC | 2 cut(s) | 76, 466 |
| MalI | GATC | 4 cut(s) | 73, 254, 303, 634 |
| MboI | GATC | 4 cut(s) | 71, 252, 301, 632 |
| MboII | GAAGA | 2 cut(s) | 615, 627 |
| MfeI | CAATTG | 1 cut(s) | 168 |
| MflI | RGATCY | 1 cut(s) | 301 |
| MhlI | GDGCHC | 1 cut(s) | 217 |
| MluCI | AATT | 3 cut(s) | 87, 168, 543 |
| MlyI | GAGTC | 1 cut(s) | 593 |
| MnlI | CCTC | 7 cut(s) | 73, 85, 133, 244, 564, 581, 584 |
| Mph1103I | ATGCAT | 1 cut(s) | 562 |
| MseI | TTAA | 2 cut(s) | 68, 581 |
| MspA1I | CMGCKG | 1 cut(s) | 448 |
| MspR9I | CCNGG | 2 cut(s) | 366, 537 |
| MunI | CAATTG | 1 cut(s) | 168 |
| Mva1269I | GAATGC | 1 cut(s) | 560 |
| MvaI | CCWGG | 2 cut(s) | 366, 537 |
| MvnI | CGCG | 1 cut(s) | 631 |
| MwoI | GCNNNNNNNGC | 1 cut(s) | 183 |
| NdeI | CATATG | 1 cut(s) | 154 |
| NdeII | GATC | 4 cut(s) | 71, 252, 301, 632 |
| NlaIII | CATG | 4 cut(s) | 281, 290, 514, 571 |
| NlaIV | GGNNCC | 1 cut(s) | 370 |
| NmuCI | GTSAC | 2 cut(s) | 76, 466 |
| NsbI | TGCGCA | 1 cut(s) | 200 |
| NsiI | ATGCAT | 1 cut(s) | 562 |
| NspI | RCATGY | 1 cut(s) | 281 |
| PctI | GAATGC | 1 cut(s) | 560 |
| PfeI | GAWTC | 1 cut(s) | 436 |
| PkrI | GCNGC | 5 cut(s) | 36, 185, 430, 450, 517 |
| PleI | GAGTC | 1 cut(s) | 593 |
| PpsI | GAGTC | 1 cut(s) | 593 |
| Psp6I | CCWGG | 2 cut(s) | 364, 535 |
| PspGI | CCWGG | 2 cut(s) | 364, 535 |
| PspN4I | GGNNCC | 1 cut(s) | 370 |
| PsuI | RGATCY | 1 cut(s) | 301 |
| PvuII | CAGCTG | 1 cut(s) | 448 |
| RsaI | GTAC | 2 cut(s) | 363, 378 |
| RsaNI | GTAC | 2 cut(s) | 362, 377 |
| SaqAI | TTAA | 2 cut(s) | 68, 581 |
| SatI | GCNGC | 5 cut(s) | 35, 184, 429, 449, 516 |
| Sau3AI | GATC | 4 cut(s) | 71, 252, 301, 632 |
| SchI | GAGTC | 1 cut(s) | 593 |
| ScrFI | CCNGG | 2 cut(s) | 366, 537 |
| SduI | GDGCHC | 1 cut(s) | 217 |
| SetI | ASST | 8 cut(s) | 36, 225, 273, 367, 382, 391, 450, 619 |
| SfaNI | GCATC | 3 cut(s) | 321, 547, 583 |
| Sse9I | AATT | 3 cut(s) | 87, 168, 543 |
| SsiI | CCGC | 1 cut(s) | 629 |
| SspMI | CTAG | 1 cut(s) | 473 |
| StyD4I | CCNGG | 2 cut(s) | 364, 535 |
| TaaI | ACNGT | 1 cut(s) | 266 |
| TasI | AATT | 3 cut(s) | 87, 168, 543 |
| TfiI | GAWTC | 1 cut(s) | 436 |
| Tru1I | TTAA | 2 cut(s) | 68, 581 |
| Tru9I | TTAA | 2 cut(s) | 68, 581 |
| TscAI | CASTG | 2 cut(s) | 81, 217 |
| TseFI | GTSAC | 2 cut(s) | 76, 466 |
| TseI | GCWGC | 5 cut(s) | 34, 183, 428, 448, 515 |
| Tsp45I | GTSAC | 2 cut(s) | 76, 466 |
| TspRI | CASTG | 2 cut(s) | 81, 217 |
| VneI | GTGCAC | 1 cut(s) | 213 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 582 |
| XceI | RCATGY | 1 cut(s) | 281 |
| XspI | CTAG | 1 cut(s) | 473 |
| Zsp2I | ATGCAT | 1 cut(s) | 562 |