pycom07g02930

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr7
OG0000108
Physical Location & Seq
Reverse (-)
2430693 .. 2433514
2822 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom07g02930.2

Sequence Viewer

Length: 1590 bp
ATGGTTTATGAGTATGTTCTTGCTGGTGTCCTGGTTTCTTTGTTGAGTTCTGTTTTCTTCCTCATCATAAACACCACCTACAGCGAAAAGAAGAAGGAAGACGTCGCGAATGTTTCTGAAACTGGTGTTTTTTCGGCGACGGAGATTGAGAAAAATACTGATGTTGTCATTGTTGGTGCCGGAGTTGCTGGTGCTGCTCTTGCTTACACTCTTGGGAAGGAAGGACGGCGTGTACATGTGATCGAAAGAGACTTGAACGAGCCAGACAGAATTGTTGGTGAACTATTGCAGCCTGGAGGCTATCTCAAGTTGATTGAATTAGGTCTTGAAGATTGTGCTAATGAGTCCATTGATGCTCAAAAAGTGTTTGGTTATGCCCTTTACAAAAATGGCAATGACACAAAACTGTCATATCCCTTAGAAACATATAGTTCAGATATCGCCGGGAGAAGTTTCCACAATGGACGTTTCATCCAAAGAATGCGGGAAAGGGCTGCAACTCTTTCAAATGTGAAAATGGAACAAGGAACAGTGACAACATTAATTGAAGAAAATGGCACTATCAGAGGAGTGATGTACAAGAACAAGGCCGGAGAGGAGATGAGAACATATGTTCCGCTAACAATAGTATGCAATGGCTGCTTTTCAAATCTGCGCCGCTCTATCTCTACTCCCAATATTGAAAATCCATCCTGCTTTGTCGGTTTGATCTTGGAGAATTGTGAGCTTCCTCATGCAAACCATGGACATGTGATTTTGGGAGACCCTTCACCCATCTTGTTTTATCCTATTAGTAGCACCGAGGTTCGTTGTTTGGTAGATGTACCCGGCACAAAAGTACCATCAGTAGCTAACGGTGAAATGGCTCAGTATTTGAAAACCGTGGTGGCTCCTCAGGTTCCCCATCAGATCTTAAAGGCTTTTCTAGCAGCGGTTGATAAAGGAATCATCAGAACAATGCAAAACAAAAGCATGCCGGCTGCTCCTCAGCCCACCCCTGGCGCAATTTTATTGGGGGATGCTTTCAACATGAGACATCCTTTAACTGGAGGAGGAATGACTGTGGCTCTTTCCGACATTGTTCTTCTAAGGGATCTTTTGAGACCCCTAAGTGACTTCAACGATGCACCTGCTTTGTGCGATTATCTCAAATCATTTTACACGCTCTGCATGCCTGTGTCATCTACTATAAACACATTGGCCGGTGCCCTTTACAAGGTGTTTTGTGCATCGCCTGACCTCGCAAGACAGGAAATGCGTGAAGCATGTTTCGACTACTTGAGCCTTGGCGGCATCTGTTCAAATGGACCAATATCTCTACTCTCCGGTCTTAACCCTCGTCCAATCAGCCTGTTTCTCCATTTCTTTGCTGTGGCTGTCTATGGAGTCAGCCGCTTAATGATTCCATTCCCTACACCGAAACGGATGTGGTTAGGGGCTAGATTGATCGTGAGTGCATCAGGAATCATATTCCCGATAATTAAAGCCGAAGGAGTTAGACAGATGTTCTTTCCTGCAACAATGCCATCATATTACAGAGCTCCTCCTGTTCACAGAAGAATCGAAACAAGAACGAAGCTTAAATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

530

Amino Acids

57.96

Weight (kDa)

8.34

Isoelectric Point (pI)

43.16

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1138
AatII GACGTC 1 cut(s) 105
Acc36I ACCTGC 1 cut(s) 1138
AccB1I GGYRCC 2 cut(s) 176, 1205
AccBSI CCGCTC 1 cut(s) 660
AccII CGCG 1 cut(s) 107
AciI CCGC 6 cut(s) 484, 617, 658, 932, 1290, 1393
AclWI GGATC 1 cut(s) 1101
AcoI YGGCCR 1 cut(s) 1200
AcyI GRCGYC 1 cut(s) 102
AfaI GTAC 4 cut(s) 234, 578, 825, 840
AfiI CCNNNNNNNGG 3 cut(s) 998, 1046, 1216
AflIII ACRYGT 2 cut(s) 235, 748
AjnI CCWGG 3 cut(s) 30, 292, 997
AloI GAACNNNNNNTCC 2 cut(s) 598, 630
AluBI AGCT 4 cut(s) 727, 851, 1541, 1579
AluI AGCT 4 cut(s) 727, 851, 1541, 1579
Alw21I GWGCWC 1 cut(s) 1543
Alw26I GTCTC 4 cut(s) 243, 756, 1027, 1096
AlwI GGATC 1 cut(s) 1101
AoxI GGCC 2 cut(s) 588, 1200
ApeKI GCWGC 6 cut(s) 194, 289, 494, 639, 929, 980
AseI ATTAAT 1 cut(s) 542
AspLEI GCGC 2 cut(s) 657, 1004
AspS9I GGNCC 1 cut(s) 1307
AsuC2I CCSGG 2 cut(s) 445, 828
AsuHPI GGTGA 3 cut(s) 290, 762, 869
AvaII GGWCC 1 cut(s) 1307
AxyI CCTNAGG 1 cut(s) 894
BaeGI GKGCMC 1 cut(s) 1210
BaeI ACNNNNGTAYC 2 cut(s) 822, 855
BanI GGYRCC 2 cut(s) 176, 1205
BanII GRGCYC 1 cut(s) 1543
BbsI GAAGAC 1 cut(s) 105
Bbv12I GWGCWC 1 cut(s) 1543
BbvCI CCTCAGC 1 cut(s) 987
BbvI GCAGC 6 cut(s) 181, 301, 481, 626, 941, 967
BccI CCATC 5 cut(s) 697, 782, 850, 912, 1534
BceAI ACGGC 1 cut(s) 242
BcgI CGANNNNNNTGC 2 cut(s) 1112, 1146
BciT130I CCWGG 3 cut(s) 32, 294, 999
BcnI CCSGG 2 cut(s) 445, 828
BcoDI GTCTC 4 cut(s) 243, 756, 1027, 1096
BfaI CTAG 2 cut(s) 926, 1440
BfmI CTRYAG 1 cut(s) 79
BfuAI ACCTGC 1 cut(s) 1138
BglI GCCNNNNNGGC 1 cut(s) 1290
BglII AGATCT 1 cut(s) 909
BisI GCNGC 9 cut(s) 195, 290, 495, 640, 658, 930, 981, 1291, 1393
BlsI GCNGC 9 cut(s) 196, 291, 496, 641, 659, 931, 982, 1292, 1394
Bme1390I CCNGG 5 cut(s) 32, 294, 445, 828, 999
Bme18I GGWCC 1 cut(s) 1307
BmgT120I GGNCC 1 cut(s) 1307
BmiI GGNNCC 4 cut(s) 178, 891, 900, 1207
BmrFI CCNGG 5 cut(s) 32, 294, 445, 828, 999
BmsI GCATC 6 cut(s) 343, 1009, 1114, 1238, 1302, 1466
BpiI GAAGAC 1 cut(s) 105
BplI GAGNNNNNCTC 2 cut(s) 288, 320
BpmI CTGGAG 2 cut(s) 315, 1068
Bpu10I CCTNAGC 1 cut(s) 987
BpuEI CTTGAG 2 cut(s) 290, 1300
BpuMI CCSGG 2 cut(s) 445, 828
BsaHI GRCGYC 1 cut(s) 102
BsaI GGTCTC 2 cut(s) 756, 1096
BsaJI CCNNGG 5 cut(s) 742, 801, 882, 997, 1285
BsaWI WCCGGW 1 cut(s) 1325
Bsc4I CCNNNNNNNGG 3 cut(s) 998, 1046, 1216
Bse118I RCCGGY 2 cut(s) 976, 1202
Bse1I ACTGG 2 cut(s) 127, 1051
Bse21I CCTNAGG 1 cut(s) 894
Bse3DI GCAATG 2 cut(s) 400, 640
BseBI CCWGG 3 cut(s) 32, 294, 999
BseDI CCNNGG 5 cut(s) 742, 801, 882, 997, 1285
BseGI GGATG 5 cut(s) 471, 689, 1024, 1036, 1431
BseLI CCNNNNNNNGG 3 cut(s) 998, 1046, 1216
BseMI GCAATG 2 cut(s) 400, 640
BseMII CTCAG 3 cut(s) 881, 908, 1001
BseNI ACTGG 2 cut(s) 127, 1051
BseRI GAGGAG 6 cut(s) 582, 611, 882, 975, 1065, 1533
BseSI GKGCMC 1 cut(s) 1210
BseXI GCAGC 6 cut(s) 181, 301, 481, 626, 941, 967
Bsh1236I CGCG 1 cut(s) 107
BshFI GGCC 2 cut(s) 590, 1202
BshNI GGYRCC 2 cut(s) 176, 1205
BsiHKAI GWGCWC 1 cut(s) 1543
BsiSI CCGG 7 cut(s) 180, 444, 591, 828, 977, 1203, 1326
BslI CCNNNNNNNGG 3 cut(s) 998, 1046, 1216
BsmAI GTCTC 4 cut(s) 243, 756, 1027, 1096
BsmI GAATGC 1 cut(s) 486
BsnI GGCC 2 cut(s) 590, 1202
Bso31I GGTCTC 2 cut(s) 756, 1096
Bsp1286I GDGCHC 2 cut(s) 1210, 1543
Bsp1407I TGTACA 2 cut(s) 232, 576
Bsp143I GATC 5 cut(s) 240, 708, 909, 1093, 1446
Bsp19I CCATGG 1 cut(s) 742
Bsp68I TCGCGA 1 cut(s) 107
BspACI CCGC 6 cut(s) 484, 617, 658, 932, 1290, 1393
BspANI GGCC 2 cut(s) 590, 1202
BspCNI CTCAG 3 cut(s) 880, 907, 1000
BspFNI CGCG 1 cut(s) 107
BspLI GGNNCC 4 cut(s) 178, 891, 900, 1207
BspMI ACCTGC 1 cut(s) 1138
BspPI GGATC 1 cut(s) 1101
BspT107I GGYRCC 2 cut(s) 176, 1205
BspTNI GGTCTC 2 cut(s) 756, 1096
BsrBI CCGCTC 1 cut(s) 660
BsrDI GCAATG 2 cut(s) 400, 640
BsrFI RCCGGY 2 cut(s) 976, 1202
BsrGI TGTACA 2 cut(s) 232, 576
BsrI ACTGG 2 cut(s) 127, 1051
BssAI RCCGGY 2 cut(s) 976, 1202
BssECI CCNNGG 5 cut(s) 742, 801, 882, 997, 1285
BssMI GATC 5 cut(s) 240, 708, 909, 1093, 1446
BssNI GRCGYC 1 cut(s) 102
BssT1I CCWWGG 2 cut(s) 742, 1285
Bst2UI CCWGG 3 cut(s) 32, 294, 999
Bst4CI ACNGT 5 cut(s) 408, 532, 857, 883, 1063
BstACI GRCGYC 1 cut(s) 102
BstAPI GCANNNNNTGC 1 cut(s) 639
BstAUI TGTACA 2 cut(s) 232, 576
BstC8I GCNNGC 3 cut(s) 974, 978, 1172
BstDEI CTNAG 6 cut(s) 418, 867, 894, 987, 1088, 1109
BstDSI CCRYGG 2 cut(s) 742, 882
BstENI CCTNNNNNAGG 1 cut(s) 1214
BstF5I GGATG 5 cut(s) 471, 689, 1024, 1036, 1431
BstFNI CGCG 1 cut(s) 107
BstHHI GCGC 2 cut(s) 657, 1004
BstKTI GATC 5 cut(s) 243, 711, 912, 1096, 1449
BstMAI GTCTC 4 cut(s) 243, 756, 1027, 1096
BstMBI GATC 5 cut(s) 240, 708, 909, 1093, 1446
BstMWI GCNNNNNNNGC 7 cut(s) 185, 194, 200, 639, 926, 1171, 1290
BstNI CCWGG 3 cut(s) 32, 294, 999
BstNSI RCATGY 5 cut(s) 239, 752, 976, 1174, 1269
BstSCI CCNGG 5 cut(s) 30, 292, 443, 826, 997
BstSFI CTRYAG 1 cut(s) 79
BstSLI GKGCMC 1 cut(s) 1210
BstUI CGCG 1 cut(s) 107
BstV1I GCAGC 6 cut(s) 181, 301, 481, 626, 941, 967
BstV2I GAAGAC 1 cut(s) 105
BstX2I RGATCY 2 cut(s) 909, 1093
BstYI RGATCY 2 cut(s) 909, 1093
Bsu36I CCTNAGG 1 cut(s) 894
BsuRI GGCC 2 cut(s) 590, 1202
BtgI CCRYGG 2 cut(s) 742, 882
BtgZI GCGATG 1 cut(s) 1215
BtsCI GGATG 5 cut(s) 471, 689, 1024, 1036, 1431
BtsIMutI CAGTG 1 cut(s) 537
BtuMI TCGCGA 1 cut(s) 107
BveI ACCTGC 1 cut(s) 1138
Cac8I GCNNGC 3 cut(s) 974, 978, 1172
CfoI GCGC 2 cut(s) 657, 1004
Cfr10I RCCGGY 2 cut(s) 976, 1202
Cfr13I GGNCC 1 cut(s) 1307
Csp6I GTAC 4 cut(s) 233, 577, 824, 839
CviAII CATG 8 cut(s) 236, 734, 743, 749, 973, 1030, 1171, 1266
CviQI GTAC 4 cut(s) 233, 577, 824, 839
DdeI CTNAG 6 cut(s) 418, 867, 894, 987, 1088, 1109
DpnI GATC 5 cut(s) 242, 710, 911, 1095, 1448
DpnII GATC 5 cut(s) 240, 708, 909, 1093, 1446
EaeI YGGCCR 1 cut(s) 1200
Ecl136II GAGCTC 1 cut(s) 1541
Eco130I CCWWGG 2 cut(s) 742, 1285
Eco24I GRGCYC 1 cut(s) 1543
Eco31I GGTCTC 2 cut(s) 756, 1096
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 1 cut(s) 1307
Eco53kI GAGCTC 1 cut(s) 1541
Eco81I CCTNAGG 1 cut(s) 894
EcoICRI GAGCTC 1 cut(s) 1541
EcoNI CCTNNNNNAGG 1 cut(s) 1214
EcoRII CCWGG 3 cut(s) 30, 292, 997
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 2 cut(s) 742, 1285
EcoT38I GRGCYC 1 cut(s) 1543
ErhI CCWWGG 2 cut(s) 742, 1285
FaeI CATG 8 cut(s) 239, 737, 746, 752, 976, 1033, 1174, 1269
FatI CATG 8 cut(s) 235, 733, 742, 748, 972, 1029, 1170, 1265
FauI CCCGC 1 cut(s) 477
FauNDI CATATG 1 cut(s) 610
Fnu4HI GCNGC 9 cut(s) 195, 290, 495, 640, 658, 930, 981, 1291, 1393
FokI GGATG 5 cut(s) 458, 676, 1023, 1031, 1438
FriOI GRGCYC 1 cut(s) 1543
Fsp4HI GCNGC 9 cut(s) 195, 290, 495, 640, 658, 930, 981, 1291, 1393
FspBI CTAG 2 cut(s) 926, 1440
GlaI GCGC 2 cut(s) 656, 1003
GluI GCNGC 9 cut(s) 195, 290, 495, 640, 658, 930, 981, 1291, 1393
GsuI CTGGAG 2 cut(s) 315, 1068
HaeIII GGCC 2 cut(s) 590, 1202
HapII CCGG 7 cut(s) 180, 444, 591, 828, 977, 1203, 1326
HhaI GCGC 2 cut(s) 657, 1004
Hin1I GRCGYC 1 cut(s) 102
Hin1II CATG 8 cut(s) 239, 737, 746, 752, 976, 1033, 1174, 1269
Hin6I GCGC 2 cut(s) 655, 1002
HinP1I GCGC 2 cut(s) 655, 1002
HindIII AAGCTT 1 cut(s) 1577
HinfI GANTC 6 cut(s) 344, 945, 1386, 1402, 1464, 1560
HpaII CCGG 7 cut(s) 180, 444, 591, 828, 977, 1203, 1326
HphI GGTGA 3 cut(s) 290, 762, 869
Hpy166II GTNNAC 3 cut(s) 233, 281, 1552
Hpy188I TCNGA 6 cut(s) 118, 436, 566, 909, 953, 1075
Hpy188III TCNNGA 5 cut(s) 106, 326, 1450, 1461, 1474
Hpy8I GTNNAC 3 cut(s) 233, 281, 1552
Hpy99I CGWCG 2 cut(s) 107, 142
HpyAV CCTTC 5 cut(s) 88, 211, 215, 777, 1484
HpyCH4III ACNGT 5 cut(s) 408, 532, 857, 883, 1063
HpyCH4IV ACGT 2 cut(s) 102, 466
HpyF10VI GCNNNNNNNGC 7 cut(s) 185, 194, 200, 639, 926, 1171, 1290
HpyF3I CTNAG 6 cut(s) 418, 867, 894, 987, 1088, 1109
HpySE526I ACGT 2 cut(s) 102, 466
Hsp92I GRCGYC 1 cut(s) 102
Hsp92II CATG 8 cut(s) 239, 737, 746, 752, 976, 1033, 1174, 1269
HspAI GCGC 2 cut(s) 655, 1002
KroI GCCGGC 1 cut(s) 976
KroNI GCCGGC 1 cut(s) 978
Kzo9I GATC 5 cut(s) 240, 708, 909, 1093, 1446
LmnI GCTCC 3 cut(s) 895, 988, 1546
Lsp1109I GCAGC 6 cut(s) 181, 301, 481, 626, 941, 967
LweI GCATC 6 cut(s) 343, 1009, 1114, 1238, 1302, 1466
MaeI CTAG 2 cut(s) 926, 1440
MaeII ACGT 2 cut(s) 102, 466
MaeIII GTNAC 2 cut(s) 532, 1112
MalI GATC 5 cut(s) 242, 710, 911, 1095, 1448
MbiI CCGCTC 1 cut(s) 660
MboI GATC 5 cut(s) 240, 708, 909, 1093, 1446
MboII GAAGA 7 cut(s) 49, 103, 110, 341, 560, 1076, 1569
MflI RGATCY 2 cut(s) 909, 1093
MhlI GDGCHC 2 cut(s) 1210, 1543
MluCI AATT 6 cut(s) 270, 317, 543, 718, 1005, 1479
MlyI GAGTC 2 cut(s) 353, 1395
MmeI TCCRAC 1 cut(s) 1098
MroNI GCCGGC 1 cut(s) 976
MseI TTAA 8 cut(s) 542, 914, 1043, 1332, 1397, 1482, 1581, 1588
MslI CAYNNNNRTG 2 cut(s) 747, 1175
MspA1I CMGCKG 1 cut(s) 932
MspI CCGG 7 cut(s) 180, 444, 591, 828, 977, 1203, 1326
MspR9I CCNGG 5 cut(s) 32, 294, 445, 828, 999
Mva1269I GAATGC 1 cut(s) 486
MvaI CCWGG 3 cut(s) 32, 294, 999
MvnI CGCG 1 cut(s) 107
MwoI GCNNNNNNNGC 7 cut(s) 185, 194, 200, 639, 926, 1171, 1290
NaeI GCCGGC 1 cut(s) 978
NciI CCSGG 2 cut(s) 445, 828
NcoI CCATGG 1 cut(s) 742
NdeI CATATG 1 cut(s) 610
NdeII GATC 5 cut(s) 240, 708, 909, 1093, 1446
NgoMIV GCCGGC 1 cut(s) 976
NlaIII CATG 8 cut(s) 239, 737, 746, 752, 976, 1033, 1174, 1269
NlaIV GGNNCC 4 cut(s) 178, 891, 900, 1207
NmuCI GTSAC 2 cut(s) 532, 1112
NruI TCGCGA 1 cut(s) 107
NspI RCATGY 5 cut(s) 239, 752, 976, 1174, 1269
PaeI GCATGC 2 cut(s) 976, 1174
PaqCI CACCTGC 1 cut(s) 1138
PciI ACATGT 2 cut(s) 235, 748
PctI GAATGC 1 cut(s) 486
PdiI GCCGGC 1 cut(s) 978
PfeI GAWTC 4 cut(s) 945, 1402, 1464, 1560
PkrI GCNGC 9 cut(s) 196, 291, 496, 641, 659, 931, 982, 1292, 1394
PleI GAGTC 2 cut(s) 352, 1394
PpsI GAGTC 2 cut(s) 352, 1394
PscI ACATGT 2 cut(s) 235, 748
PshBI ATTAAT 1 cut(s) 542
Psp124BI GAGCTC 1 cut(s) 1543
Psp6I CCWGG 3 cut(s) 30, 292, 997
PspGI CCWGG 3 cut(s) 30, 292, 997
PspN4I GGNNCC 4 cut(s) 178, 891, 900, 1207
PspPI GGNCC 1 cut(s) 1307
PsuI RGATCY 2 cut(s) 909, 1093
RruI TCGCGA 1 cut(s) 107
RsaI GTAC 4 cut(s) 234, 578, 825, 840
RsaNI GTAC 4 cut(s) 233, 577, 824, 839
RseI CAYNNNNRTG 2 cut(s) 747, 1175
SacI GAGCTC 1 cut(s) 1543
SaqAI TTAA 8 cut(s) 542, 914, 1043, 1332, 1397, 1482, 1581, 1588
SatI GCNGC 9 cut(s) 195, 290, 495, 640, 658, 930, 981, 1291, 1393
Sau3AI GATC 5 cut(s) 240, 708, 909, 1093, 1446
Sau96I GGNCC 1 cut(s) 1307
SchI GAGTC 2 cut(s) 353, 1395
ScrFI CCNGG 5 cut(s) 32, 294, 445, 828, 999
SduI GDGCHC 2 cut(s) 1210, 1543
SfaNI GCATC 6 cut(s) 343, 1009, 1114, 1238, 1302, 1466
SfcI CTRYAG 1 cut(s) 79
SinI GGWCC 1 cut(s) 1307
SmiMI CAYNNNNRTG 2 cut(s) 747, 1175
SmlI CTYRAG 2 cut(s) 305, 1279
SmoI CTYRAG 2 cut(s) 305, 1279
SphI GCATGC 2 cut(s) 976, 1174
Sse9I AATT 6 cut(s) 270, 317, 543, 718, 1005, 1479
SsiI CCGC 6 cut(s) 484, 617, 658, 932, 1290, 1393
SspI AATATT 1 cut(s) 679
SspMI CTAG 2 cut(s) 926, 1440
SstI GAGCTC 1 cut(s) 1543
StyD4I CCNGG 5 cut(s) 30, 292, 443, 826, 997
StyI CCWWGG 2 cut(s) 742, 1285
TaaI ACNGT 5 cut(s) 408, 532, 857, 883, 1063
TaiI ACGT 2 cut(s) 105, 469
TaqI TCGA 3 cut(s) 243, 1272, 1563
TasI AATT 6 cut(s) 270, 317, 543, 718, 1005, 1479
TatI WGTACW 2 cut(s) 232, 576
TauI GCSGC 3 cut(s) 660, 1293, 1395
TfiI GAWTC 4 cut(s) 945, 1402, 1464, 1560
Tru1I TTAA 8 cut(s) 542, 914, 1043, 1332, 1397, 1482, 1581, 1588
Tru9I TTAA 8 cut(s) 542, 914, 1043, 1332, 1397, 1482, 1581, 1588
TscAI CASTG 1 cut(s) 537
TseFI GTSAC 2 cut(s) 532, 1112
TseI GCWGC 6 cut(s) 194, 289, 494, 639, 929, 980
Tsp45I GTSAC 2 cut(s) 532, 1112
TspDTI ATGAA 1 cut(s) 460
TspGWI ACGGA 2 cut(s) 155, 1438
TspRI CASTG 1 cut(s) 537
VpaK11BI GGWCC 1 cut(s) 1307
VspI ATTAAT 1 cut(s) 542
XagI CCTNNNNNAGG 1 cut(s) 1214
XceI RCATGY 5 cut(s) 239, 752, 976, 1174, 1269
XspI CTAG 2 cut(s) 926, 1440
ZraI GACGTC 1 cut(s) 103
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.