Rh6CG031600

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000108
Physical Location & Seq
Reverse (-)
2926447 .. 2929068
2622 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG031600.1

Sequence Viewer

Length: 1419 bp
ATGGAGGAGGAGAAAAGTACCGACGTCGTCATTGTCGGTGCCGGAGTTGCCGGTGCAGCTCTTGCTTACACTCTTGCCAAGGAAGGACGCCGGGTACATGTCATCGAAAGAGACTTGACTGAGCCGGATAGAATTGTTGGTGAGCTGTTGCAGCCTGGGGGTTATCTCAAATTGATTGAGTTGGGTCTTGAGGACTGTGCAAATGAGTCCATTGATGCACAGAAGGTGTTTGGTTATGCTCTTTACAAAGATGGAAAGGATACTACATTGTCTTATCCCTTAGAAAAATACAGTTCAGATGTGGCTGGGAGAAGTTTCCACAACGGTCGTTTCATTCAGAGAATGCGTGAAAAAGCTGCAACTCTTTCAAATGTAAAATTGGAACAAGGATCAGTGACGACACTAATCGAGGAAAAGGGCATTGTCAAAGGGGTGATTTACAAGAACAAGGCTGGAGAAGAGATGAGAACATATGCTCCACTAACTATTGTATGCGATGGCTGCTTTTCAAATCTGCGCAAATCTCTCAGTGCTCCAAAGGTTGAAAGTCCCTCTTGTTTTGTTGGTTTGATCTTGGAGAACTGTGACCTTCCACATGCAAATCATGGACATGTGATTTTGGGAGACCCTTCACCCATCCTATTTTATCCTATCAGTTCTACTGAGGTTCGTTGTTTGGTTGATATACCTGGAACAAAAGTACCTTCAGTAGCTAATGGTGAAATGGTTAACTATCTGAAGACTGTAGTGGCTCCTCAGGTTCCCCCACAACTGTACAATGCTTTTATGGCCGCTGTCAACAAGGGAAACATCAGATCCATGCAAAACAGAAGCATGGCTGCTAATCCTGTTCCCACTCCTGGTGCAATTTTGTTGGGGGATTCATTCAACATGAGGCATCCTTTAACAGGAGGAGGAATGACCGTGGCTCTTTCAGACATTGTTCTTCTCCGGGATCTTCTTAGACCCCTACGTAATCTCAATGATGCACCTGCTTTGTGCAATTACCTTGAATCATTTTACACACTGCGTAAGCCTGTGTCATCTACCATAAACACATTGGCAGGTGCATTGTACAAGGTGTTTTGTGCATCACCTGATCCAGCAAGACAGGAAATGCGTGAAGCATGTTTTGGCTATTTGAGCCTTGGAGGCATCTGCTCATATGGACCGGTATCGCTTCTCTCTGGTCTTAACCCTCGTCCACTACACTTGTTTCTCCATTTCTTTGCTGTTGCCATCTATGGTGTCGGCCGCTTAATGCTTCCATTCCCTTCACCTAAACGCATGTGGCTTGGGTTTCGTTTGATCTTGAGCGCATCAGGTATCATATTCCCCATTATAAAGGGCGAAGGAGTTAGACAGATGTTTTTTCCTGCCACAGTACCAGCATATTACAGAGTTCCTCCTGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

472

Amino Acids

51.51

Weight (kDa)

8.67

Isoelectric Point (pI)

47.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 7 - 318 4.6e-18 FAD binding domain
DAO PF01266 8 - 38 5.5e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 8 - 37 9.8e-06 FAD binding domain
NAD_binding_8 PF13450 11 - 37 1.7e-06 NAD(P)-binding Rossmann-like domain
SE PF08491 159 - 431 3.2e-118 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1343
AarI CACCTGC 2 cut(s) 1000, 1055
AatII GACGTC 1 cut(s) 27
Acc16I TGCGCA 1 cut(s) 518
Acc36I ACCTGC 2 cut(s) 1000, 1055
AccB1I GGYRCC 1 cut(s) 38
AciI CCGC 2 cut(s) 792, 1255
AclWI GGATC 4 cut(s) 397, 810, 963, 1094
AcoI YGGCCR 2 cut(s) 789, 1252
AcuI CTGAAG 2 cut(s) 690, 758
AcyI GRCGYC 2 cut(s) 24, 88
AfaI GTAC 6 cut(s) 19, 96, 702, 776, 1076, 1386
AfiI CCNNNNNNNGG 2 cut(s) 860, 908
AflIII ACRYGT 2 cut(s) 97, 610
AgeI ACCGGT 1 cut(s) 1171
AgsI TTSAA 5 cut(s) 369, 510, 545, 889, 1013
AjnI CCWGG 3 cut(s) 154, 688, 859
AjuI GAANNNNNNNTTGG 2 cut(s) 1116, 1148
AloI GAACNNNNNNTCC 2 cut(s) 460, 492
AluBI AGCT 4 cut(s) 59, 145, 356, 713
AluI AGCT 4 cut(s) 59, 145, 356, 713
Alw21I GWGCWC 1 cut(s) 535
Alw26I GTCTC 2 cut(s) 105, 618
AlwI GGATC 4 cut(s) 397, 810, 963, 1094
AoxI GGCC 2 cut(s) 789, 1252
ApeKI GCWGC 5 cut(s) 56, 151, 356, 501, 839
AsiGI ACCGGT 1 cut(s) 1171
AspLEI GCGC 2 cut(s) 519, 1319
AspS9I GGNCC 1 cut(s) 1169
AsuC2I CCSGG 2 cut(s) 92, 953
AsuHPI GGTGA 6 cut(s) 152, 445, 624, 731, 1086, 1269
AvaII GGWCC 1 cut(s) 1169
AxyI CCTNAGG 1 cut(s) 756
BaeI ACNNNNGTAYC 2 cut(s) 684, 717
BanI GGYRCC 1 cut(s) 38
BbsI GAAGAC 1 cut(s) 746
Bbv12I GWGCWC 1 cut(s) 535
BbvI GCAGC 5 cut(s) 68, 163, 343, 488, 826
BccI CCATC 4 cut(s) 245, 491, 644, 1247
BciT130I CCWGG 3 cut(s) 156, 690, 861
BciVI GTATCC 1 cut(s) 253
BcnI CCSGG 2 cut(s) 92, 953
BcoDI GTCTC 2 cut(s) 105, 618
BfmI CTRYAG 1 cut(s) 744
BfuAI ACCTGC 2 cut(s) 1000, 1055
BfuI GTATCC 1 cut(s) 253
BglI GCCNNNNNGGC 1 cut(s) 1152
BisI GCNGC 7 cut(s) 57, 152, 357, 502, 792, 840, 1255
BlsI GCNGC 7 cut(s) 58, 153, 358, 503, 793, 841, 1256
Bme1390I CCNGG 5 cut(s) 92, 156, 690, 861, 953
Bme18I GGWCC 1 cut(s) 1169
BmgT120I GGNCC 1 cut(s) 1169
BmiI GGNNCC 3 cut(s) 40, 753, 762
BmrFI CCNGG 5 cut(s) 92, 156, 690, 861, 953
BmsI GCATC 6 cut(s) 205, 907, 976, 1100, 1164, 1328
BpiI GAAGAC 1 cut(s) 746
BpmI CTGGAG 1 cut(s) 474
BpuEI CTTGAG 2 cut(s) 209, 1333
BpuMI CCSGG 2 cut(s) 92, 953
BsaAI YACGTR 1 cut(s) 974
BsaHI GRCGYC 2 cut(s) 24, 88
BsaI GGTCTC 1 cut(s) 618
BsaJI CCNNGG 4 cut(s) 78, 155, 924, 1147
BsaWI WCCGGW 1 cut(s) 1171
BsaXI ACNNNNNCTCC 2 cut(s) 460, 490
Bsc4I CCNNNNNNNGG 2 cut(s) 860, 908
Bse118I RCCGGY 2 cut(s) 50, 1171
Bse21I CCTNAGG 1 cut(s) 756
BseBI CCWGG 3 cut(s) 156, 690, 861
BseDI CCNNGG 4 cut(s) 78, 155, 924, 1147
BseGI GGATG 2 cut(s) 636, 898
BseLI CCNNNNNNNGG 2 cut(s) 860, 908
BseMII CTCAG 4 cut(s) 111, 541, 654, 770
BseRI GAGGAG 4 cut(s) 20, 23, 744, 927
BseX3I CGGCCG 1 cut(s) 1252
BseXI GCAGC 5 cut(s) 68, 163, 343, 488, 826
BseYI CCCAGC 1 cut(s) 305
BsgI GTGCAG 1 cut(s) 75
Bsh1285I CGRYCG 2 cut(s) 328, 1255
BshFI GGCC 2 cut(s) 791, 1254
BshNI GGYRCC 1 cut(s) 38
BshTI ACCGGT 1 cut(s) 1171
BsiEI CGRYCG 2 cut(s) 328, 1255
BsiHKAI GWGCWC 1 cut(s) 535
BsiSI CCGG 6 cut(s) 42, 51, 91, 125, 952, 1172
BslFI GGGAC 1 cut(s) 534
BslI CCNNNNNNNGG 2 cut(s) 860, 908
BsmAI GTCTC 2 cut(s) 105, 618
BsmFI GGGAC 1 cut(s) 534
BsmI GAATGC 1 cut(s) 348
BsnI GGCC 2 cut(s) 791, 1254
Bso31I GGTCTC 1 cut(s) 618
Bsp1286I GDGCHC 1 cut(s) 535
Bsp1407I TGTACA 2 cut(s) 774, 1074
Bsp143I GATC 6 cut(s) 389, 570, 815, 955, 1099, 1308
BspACI CCGC 2 cut(s) 792, 1255
BspANI GGCC 2 cut(s) 791, 1254
BspCNI CTCAG 4 cut(s) 112, 540, 655, 769
BspLI GGNNCC 3 cut(s) 40, 753, 762
BspMI ACCTGC 2 cut(s) 1000, 1055
BspPI GGATC 4 cut(s) 397, 810, 963, 1094
BspT107I GGYRCC 1 cut(s) 38
BspTNI GGTCTC 1 cut(s) 618
BsrFI RCCGGY 2 cut(s) 50, 1171
BsrGI TGTACA 2 cut(s) 774, 1074
BssAI RCCGGY 2 cut(s) 50, 1171
BssECI CCNNGG 4 cut(s) 78, 155, 924, 1147
BssMI GATC 6 cut(s) 389, 570, 815, 955, 1099, 1308
BssNI GRCGYC 2 cut(s) 24, 88
BssT1I CCWWGG 2 cut(s) 78, 1147
Bst2UI CCWGG 3 cut(s) 156, 690, 861
Bst4CI ACNGT 8 cut(s) 197, 293, 326, 584, 745, 774, 925, 1384
Bst6I CTCTTC 1 cut(s) 453
BstACI GRCGYC 2 cut(s) 24, 88
BstAPI GCANNNNNTGC 1 cut(s) 62
BstAUI TGTACA 2 cut(s) 774, 1074
BstBAI YACGTR 1 cut(s) 974
BstDEI CTNAG 6 cut(s) 120, 280, 527, 663, 756, 962
BstDSI CCRYGG 1 cut(s) 924
BstENI CCTNNNNNAGG 1 cut(s) 906
BstF5I GGATG 2 cut(s) 636, 898
BstHHI GCGC 2 cut(s) 519, 1319
BstKTI GATC 6 cut(s) 392, 573, 818, 958, 1102, 1311
BstMAI GTCTC 2 cut(s) 105, 618
BstMBI GATC 6 cut(s) 389, 570, 815, 955, 1099, 1308
BstMCI CGRYCG 2 cut(s) 328, 1255
BstMWI GCNNNNNNNGC 8 cut(s) 47, 56, 62, 151, 501, 788, 1143, 1152
BstNI CCWGG 3 cut(s) 156, 690, 861
BstNSI RCATGY 5 cut(s) 101, 599, 614, 1131, 1291
BstSCI CCNGG 5 cut(s) 90, 154, 688, 859, 951
BstSFI CTRYAG 1 cut(s) 744
BstSNI TACGTA 1 cut(s) 974
BstV1I GCAGC 5 cut(s) 68, 163, 343, 488, 826
BstV2I GAAGAC 1 cut(s) 746
BstX2I RGATCY 2 cut(s) 815, 955
BstYI RGATCY 2 cut(s) 815, 955
BstZI CGGCCG 1 cut(s) 1252
Bsu36I CCTNAGG 1 cut(s) 756
BsuI GTATCC 1 cut(s) 253
BsuRI GGCC 2 cut(s) 791, 1254
BtgI CCRYGG 1 cut(s) 924
BtgZI GCGATG 1 cut(s) 510
BtsCI GGATG 2 cut(s) 636, 898
BtsI GCAGTG 1 cut(s) 1025
BtsIMutI CAGTG 3 cut(s) 399, 535, 1025
BveI ACCTGC 2 cut(s) 1000, 1055
CfoI GCGC 2 cut(s) 519, 1319
Cfr10I RCCGGY 2 cut(s) 50, 1171
Cfr13I GGNCC 1 cut(s) 1169
CseI GACGC 1 cut(s) 96
Csp6I GTAC 6 cut(s) 18, 95, 701, 775, 1075, 1385
CspAI ACCGGT 1 cut(s) 1171
CspCI CAANNNNNGTGG 2 cut(s) 1194, 1229
CviAII CATG 9 cut(s) 98, 596, 605, 611, 820, 835, 892, 1128, 1288
CviQI GTAC 6 cut(s) 18, 95, 701, 775, 1075, 1385
DdeI CTNAG 6 cut(s) 120, 280, 527, 663, 756, 962
DpnI GATC 6 cut(s) 391, 572, 817, 957, 1101, 1310
DpnII GATC 6 cut(s) 389, 570, 815, 955, 1099, 1308
EaeI YGGCCR 2 cut(s) 789, 1252
EagI CGGCCG 1 cut(s) 1252
Eam1104I CTCTTC 1 cut(s) 453
EarI CTCTTC 1 cut(s) 453
EclXI CGGCCG 1 cut(s) 1252
Eco105I TACGTA 1 cut(s) 974
Eco130I CCWWGG 2 cut(s) 78, 1147
Eco31I GGTCTC 1 cut(s) 618
Eco47I GGWCC 1 cut(s) 1169
Eco52I CGGCCG 1 cut(s) 1252
Eco57I CTGAAG 2 cut(s) 690, 758
Eco81I CCTNAGG 1 cut(s) 756
EcoNI CCTNNNNNAGG 1 cut(s) 906
EcoRII CCWGG 3 cut(s) 154, 688, 859
EcoT14I CCWWGG 2 cut(s) 78, 1147
ErhI CCWWGG 2 cut(s) 78, 1147
FaeI CATG 9 cut(s) 101, 599, 608, 614, 823, 838, 895, 1131, 1291
FalI AAGNNNNNCTT 2 cut(s) 538, 570
FaqI GGGAC 1 cut(s) 534
FatI CATG 9 cut(s) 97, 595, 604, 610, 819, 834, 891, 1127, 1287
FauNDI CATATG 2 cut(s) 472, 1165
Fnu4HI GCNGC 7 cut(s) 57, 152, 357, 502, 792, 840, 1255
FokI GGATG 2 cut(s) 623, 885
Fsp4HI GCNGC 7 cut(s) 57, 152, 357, 502, 792, 840, 1255
FspI TGCGCA 1 cut(s) 518
GlaI GCGC 2 cut(s) 518, 1318
GluI GCNGC 7 cut(s) 57, 152, 357, 502, 792, 840, 1255
GsaI CCCAGC 1 cut(s) 309
GsuI CTGGAG 1 cut(s) 474
HaeIII GGCC 2 cut(s) 791, 1254
HapII CCGG 6 cut(s) 42, 51, 91, 125, 952, 1172
HgaI GACGC 1 cut(s) 96
HhaI GCGC 2 cut(s) 519, 1319
Hin1I GRCGYC 2 cut(s) 24, 88
Hin1II CATG 9 cut(s) 101, 599, 608, 614, 823, 838, 895, 1131, 1291
Hin6I GCGC 2 cut(s) 517, 1317
HinP1I GCGC 2 cut(s) 517, 1317
HincII GTYRAC 2 cut(s) 730, 799
HindII GTYRAC 2 cut(s) 730, 799
HinfI GANTC 3 cut(s) 206, 881, 1013
HpaI GTTAAC 1 cut(s) 730
HpaII CCGG 6 cut(s) 42, 51, 91, 125, 952, 1172
HphI GGTGA 6 cut(s) 152, 445, 624, 731, 1086, 1269
Hpy166II GTNNAC 3 cut(s) 730, 799, 1205
Hpy188I TCNGA 5 cut(s) 298, 339, 738, 815, 937
Hpy188III TCNNGA 2 cut(s) 188, 1312
Hpy8I GTNNAC 3 cut(s) 730, 799, 1205
Hpy99I CGWCG 2 cut(s) 26, 29
HpyAV CCTTC 7 cut(s) 77, 217, 599, 639, 714, 1284, 1346
HpyCH4III ACNGT 8 cut(s) 197, 293, 326, 584, 745, 774, 925, 1384
HpyCH4IV ACGT 2 cut(s) 24, 973
HpyF10VI GCNNNNNNNGC 8 cut(s) 47, 56, 62, 151, 501, 788, 1143, 1152
HpyF3I CTNAG 6 cut(s) 120, 280, 527, 663, 756, 962
HpySE526I ACGT 2 cut(s) 24, 973
Hsp92I GRCGYC 2 cut(s) 24, 88
Hsp92II CATG 9 cut(s) 101, 599, 608, 614, 823, 838, 895, 1131, 1291
HspAI GCGC 2 cut(s) 517, 1317
KspAI GTTAAC 1 cut(s) 730
Kzo9I GATC 6 cut(s) 389, 570, 815, 955, 1099, 1308
LmnI GCTCC 3 cut(s) 481, 538, 757
Lsp1109I GCAGC 5 cut(s) 68, 163, 343, 488, 826
LweI GCATC 6 cut(s) 205, 907, 976, 1100, 1164, 1328
MaeII ACGT 2 cut(s) 24, 973
MaeIII GTNAC 2 cut(s) 394, 584
MalI GATC 6 cut(s) 391, 572, 817, 957, 1101, 1310
MboI GATC 6 cut(s) 389, 570, 815, 955, 1099, 1308
MboII GAAGA 4 cut(s) 470, 751, 938, 950
MflI RGATCY 2 cut(s) 815, 955
MhlI GDGCHC 1 cut(s) 535
MluCI AATT 5 cut(s) 132, 170, 377, 867, 1003
MlyI GAGTC 1 cut(s) 215
MseI TTAA 4 cut(s) 729, 905, 1194, 1259
MslI CAYNNNNRTG 1 cut(s) 609
MspA1I CMGCKG 1 cut(s) 794
MspI CCGG 6 cut(s) 42, 51, 91, 125, 952, 1172
MspR9I CCNGG 5 cut(s) 92, 156, 690, 861, 953
Mva1269I GAATGC 1 cut(s) 348
MvaI CCWGG 3 cut(s) 156, 690, 861
MwoI GCNNNNNNNGC 8 cut(s) 47, 56, 62, 151, 501, 788, 1143, 1152
NciI CCSGG 2 cut(s) 92, 953
NdeI CATATG 2 cut(s) 472, 1165
NdeII GATC 6 cut(s) 389, 570, 815, 955, 1099, 1308
NlaIII CATG 9 cut(s) 101, 599, 608, 614, 823, 838, 895, 1131, 1291
NlaIV GGNNCC 3 cut(s) 40, 753, 762
NmuCI GTSAC 2 cut(s) 394, 584
NsbI TGCGCA 1 cut(s) 518
NspI RCATGY 5 cut(s) 101, 599, 614, 1131, 1291
PaqCI CACCTGC 2 cut(s) 1000, 1055
PciI ACATGT 2 cut(s) 97, 610
PctI GAATGC 1 cut(s) 348
PfeI GAWTC 2 cut(s) 881, 1013
PflFI GACNNNGTC 1 cut(s) 26
PfoI TCCNGGA 1 cut(s) 951
PinAI ACCGGT 1 cut(s) 1171
PkrI GCNGC 7 cut(s) 58, 153, 358, 503, 793, 841, 1256
PleI GAGTC 1 cut(s) 214
PpsI GAGTC 1 cut(s) 214
Ppu21I YACGTR 1 cut(s) 974
PscI ACATGT 2 cut(s) 97, 610
PsiI TTATAA 1 cut(s) 1343
Psp6I CCWGG 3 cut(s) 154, 688, 859
PspFI CCCAGC 1 cut(s) 305
PspGI CCWGG 3 cut(s) 154, 688, 859
PspN4I GGNNCC 3 cut(s) 40, 753, 762
PspPI GGNCC 1 cut(s) 1169
PsuI RGATCY 2 cut(s) 815, 955
PsyI GACNNNGTC 1 cut(s) 26
RsaI GTAC 6 cut(s) 19, 96, 702, 776, 1076, 1386
RsaNI GTAC 6 cut(s) 18, 95, 701, 775, 1075, 1385
RseI CAYNNNNRTG 1 cut(s) 609
SaqAI TTAA 4 cut(s) 729, 905, 1194, 1259
SatI GCNGC 7 cut(s) 57, 152, 357, 502, 792, 840, 1255
Sau3AI GATC 6 cut(s) 389, 570, 815, 955, 1099, 1308
Sau96I GGNCC 1 cut(s) 1169
SchI GAGTC 1 cut(s) 215
ScrFI CCNGG 5 cut(s) 92, 156, 690, 861, 953
SduI GDGCHC 1 cut(s) 535
SfaNI GCATC 6 cut(s) 205, 907, 976, 1100, 1164, 1328
SfcI CTRYAG 1 cut(s) 744
SinI GGWCC 1 cut(s) 1169
SmiMI CAYNNNNRTG 1 cut(s) 609
SmlI CTYRAG 2 cut(s) 188, 1312
SmoI CTYRAG 2 cut(s) 188, 1312
SnaBI TACGTA 1 cut(s) 974
Sse9I AATT 5 cut(s) 132, 170, 377, 867, 1003
SsiI CCGC 2 cut(s) 792, 1255
StyD4I CCNGG 5 cut(s) 90, 154, 688, 859, 951
StyI CCWWGG 2 cut(s) 78, 1147
TaaI ACNGT 8 cut(s) 197, 293, 326, 584, 745, 774, 925, 1384
TaiI ACGT 2 cut(s) 27, 976
TaqI TCGA 2 cut(s) 105, 408
TasI AATT 5 cut(s) 132, 170, 377, 867, 1003
TatI WGTACW 2 cut(s) 774, 1074
TauI GCSGC 2 cut(s) 794, 1257
TfiI GAWTC 2 cut(s) 881, 1013
Tru1I TTAA 4 cut(s) 729, 905, 1194, 1259
Tru9I TTAA 4 cut(s) 729, 905, 1194, 1259
TscAI CASTG 3 cut(s) 399, 535, 1032
TseFI GTSAC 2 cut(s) 394, 584
TseI GCWGC 5 cut(s) 56, 151, 356, 501, 839
Tsp45I GTSAC 2 cut(s) 394, 584
TspDTI ATGAA 3 cut(s) 322, 873, 1403
TspRI CASTG 3 cut(s) 399, 535, 1032
Tth111I GACNNNGTC 1 cut(s) 26
VpaK11BI GGWCC 1 cut(s) 1169
XagI CCTNNNNNAGG 1 cut(s) 906
XceI RCATGY 5 cut(s) 101, 599, 614, 1131, 1291
XcmI CCANNNNNNNNNTGG 1 cut(s) 1057
ZraI GACGTC 1 cut(s) 25
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.