squalene
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 658, 713 |
| Acc36I | ACCTGC | 2 cut(s) | 658, 713 |
| AccII | CGCG | 1 cut(s) | 424 |
| AciI | CCGC | 3 cut(s) | 422, 610, 863 |
| AclWI | GGATC | 2 cut(s) | 55, 1053 |
| AcuI | CTGAAG | 1 cut(s) | 348 |
| AfaI | GTAC | 2 cut(s) | 345, 360 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 518, 566 |
| AflIII | ACRYGT | 1 cut(s) | 268 |
| AgsI | TTSAA | 5 cut(s) | 27, 168, 203, 397, 547 |
| AjnI | CCWGG | 2 cut(s) | 346, 517 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 774, 806 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 118, 150 |
| AluBI | AGCT | 3 cut(s) | 14, 247, 430 |
| AluI | AGCT | 3 cut(s) | 14, 247, 430 |
| Alw26I | GTCTC | 1 cut(s) | 276 |
| AlwI | GGATC | 2 cut(s) | 55, 1053 |
| AoxI | GGCC | 1 cut(s) | 108 |
| ApeKI | GCWGC | 4 cut(s) | 14, 449, 497, 865 |
| AspS9I | GGNCC | 1 cut(s) | 827 |
| AsuHPI | GGTGA | 5 cut(s) | 282, 389, 744, 927, 1019 |
| AvaII | GGWCC | 1 cut(s) | 827 |
| BaeGI | GKGCMC | 1 cut(s) | 193 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 342, 375 |
| BbvI | GCAGC | 3 cut(s) | 436, 484, 852 |
| BccI | CCATC | 4 cut(s) | 149, 217, 302, 461 |
| BciT130I | CCWGG | 2 cut(s) | 348, 519 |
| BclI | TGATCA | 1 cut(s) | 757 |
| BcoDI | GTCTC | 1 cut(s) | 276 |
| BfaI | CTAG | 2 cut(s) | 372, 960 |
| BfmI | CTRYAG | 1 cut(s) | 901 |
| BfuAI | ACCTGC | 2 cut(s) | 658, 713 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 810 |
| BisI | GCNGC | 4 cut(s) | 15, 450, 498, 866 |
| BlsI | GCNGC | 4 cut(s) | 16, 451, 499, 867 |
| Bme1390I | CCNGG | 2 cut(s) | 348, 519 |
| Bme18I | GGWCC | 1 cut(s) | 827 |
| BmgT120I | GGNCC | 1 cut(s) | 827 |
| BmiI | GGNNCC | 1 cut(s) | 411 |
| BmrFI | CCNGG | 2 cut(s) | 348, 519 |
| BmsI | GCATC | 6 cut(s) | 565, 634, 758, 822, 986, 1014 |
| BpuEI | CTTGAG | 2 cut(s) | 689, 991 |
| BsaI | GGTCTC | 1 cut(s) | 276 |
| BsaJI | CCNNGG | 1 cut(s) | 805 |
| BsaWI | WCCGGW | 1 cut(s) | 307 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 118, 148 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 518, 566 |
| Bse1I | ACTGG | 1 cut(s) | 830 |
| Bse3DI | GCAATG | 1 cut(s) | 683 |
| BseBI | CCWGG | 2 cut(s) | 348, 519 |
| BseDI | CCNNGG | 1 cut(s) | 805 |
| BseGI | GGATG | 3 cut(s) | 294, 346, 556 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 518, 566 |
| BseMI | GCAATG | 1 cut(s) | 683 |
| BseMII | CTCAG | 2 cut(s) | 199, 428 |
| BseNI | ACTGG | 1 cut(s) | 830 |
| BseRI | GAGGAG | 3 cut(s) | 131, 402, 585 |
| BseSI | GKGCMC | 1 cut(s) | 193 |
| BseXI | GCAGC | 3 cut(s) | 436, 484, 852 |
| BsgI | GTGCAG | 1 cut(s) | 851 |
| Bsh1236I | CGCG | 1 cut(s) | 424 |
| BshFI | GGCC | 1 cut(s) | 110 |
| BsiSI | CCGG | 2 cut(s) | 111, 308 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 518, 566 |
| BsmAI | GTCTC | 1 cut(s) | 276 |
| BsnI | GGCC | 1 cut(s) | 110 |
| Bso31I | GGTCTC | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 1 cut(s) | 193 |
| Bsp143I | GATC | 6 cut(s) | 47, 228, 634, 757, 966, 1058 |
| BspACI | CCGC | 3 cut(s) | 422, 610, 863 |
| BspANI | GGCC | 1 cut(s) | 110 |
| BspCNI | CTCAG | 2 cut(s) | 198, 427 |
| BspFNI | CGCG | 1 cut(s) | 424 |
| BspLI | GGNNCC | 1 cut(s) | 411 |
| BspMI | ACCTGC | 2 cut(s) | 658, 713 |
| BspPI | GGATC | 2 cut(s) | 55, 1053 |
| BspTNI | GGTCTC | 1 cut(s) | 276 |
| BsrDI | GCAATG | 1 cut(s) | 683 |
| BsrI | ACTGG | 1 cut(s) | 830 |
| BssECI | CCNNGG | 1 cut(s) | 805 |
| BssMI | GATC | 6 cut(s) | 47, 228, 634, 757, 966, 1058 |
| BssT1I | CCWWGG | 1 cut(s) | 805 |
| Bst2UI | CCWGG | 2 cut(s) | 348, 519 |
| Bst4CI | ACNGT | 4 cut(s) | 145, 242, 583, 1042 |
| Bst6I | CTCTTC | 2 cut(s) | 513, 843 |
| BstC8I | GCNNGC | 1 cut(s) | 1047 |
| BstDEI | CTNAG | 3 cut(s) | 185, 414, 620 |
| BstF5I | GGATG | 3 cut(s) | 294, 346, 556 |
| BstFNI | CGCG | 1 cut(s) | 424 |
| BstKTI | GATC | 6 cut(s) | 50, 231, 637, 760, 969, 1061 |
| BstMAI | GTCTC | 1 cut(s) | 276 |
| BstMBI | GATC | 6 cut(s) | 47, 228, 634, 757, 966, 1058 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 446, 801, 810, 919 |
| BstNI | CCWGG | 2 cut(s) | 348, 519 |
| BstNSI | RCATGY | 2 cut(s) | 272, 949 |
| BstSCI | CCNGG | 2 cut(s) | 346, 517 |
| BstSFI | CTRYAG | 1 cut(s) | 901 |
| BstSLI | GKGCMC | 1 cut(s) | 193 |
| BstUI | CGCG | 1 cut(s) | 424 |
| BstV1I | GCAGC | 3 cut(s) | 436, 484, 852 |
| BstX2I | RGATCY | 1 cut(s) | 1058 |
| BstYI | RGATCY | 1 cut(s) | 1058 |
| BsuRI | GGCC | 1 cut(s) | 110 |
| BtsCI | GGATG | 3 cut(s) | 294, 346, 556 |
| BtsIMutI | CAGTG | 2 cut(s) | 193, 1047 |
| BveI | ACCTGC | 2 cut(s) | 658, 713 |
| Cac8I | GCNNGC | 1 cut(s) | 1047 |
| Cfr13I | GGNCC | 1 cut(s) | 827 |
| CseI | GACGC | 1 cut(s) | 413 |
| Csp6I | GTAC | 2 cut(s) | 344, 359 |
| CviAII | CATG | 8 cut(s) | 5, 263, 269, 320, 493, 550, 632, 946 |
| CviQI | GTAC | 2 cut(s) | 344, 359 |
| DdeI | CTNAG | 3 cut(s) | 185, 414, 620 |
| DpnI | GATC | 6 cut(s) | 49, 230, 636, 759, 968, 1060 |
| DpnII | GATC | 6 cut(s) | 47, 228, 634, 757, 966, 1058 |
| Eam1104I | CTCTTC | 2 cut(s) | 513, 843 |
| EarI | CTCTTC | 2 cut(s) | 513, 843 |
| Eco130I | CCWWGG | 1 cut(s) | 805 |
| Eco31I | GGTCTC | 1 cut(s) | 276 |
| Eco47I | GGWCC | 1 cut(s) | 827 |
| Eco57I | CTGAAG | 1 cut(s) | 348 |
| EcoRII | CCWGG | 2 cut(s) | 346, 517 |
| EcoT14I | CCWWGG | 1 cut(s) | 805 |
| EcoT22I | ATGCAT | 1 cut(s) | 6 |
| ErhI | CCWWGG | 1 cut(s) | 805 |
| FaeI | CATG | 8 cut(s) | 8, 266, 272, 323, 496, 553, 635, 949 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 196, 228 |
| FatI | CATG | 8 cut(s) | 4, 262, 268, 319, 492, 549, 631, 945 |
| FauNDI | CATATG | 2 cut(s) | 130, 823 |
| FbaI | TGATCA | 1 cut(s) | 757 |
| Fnu4HI | GCNGC | 4 cut(s) | 15, 450, 498, 866 |
| FokI | GGATG | 3 cut(s) | 281, 353, 543 |
| Fsp4HI | GCNGC | 4 cut(s) | 15, 450, 498, 866 |
| FspBI | CTAG | 2 cut(s) | 372, 960 |
| GluI | GCNGC | 4 cut(s) | 15, 450, 498, 866 |
| HaeIII | GGCC | 1 cut(s) | 110 |
| HapII | CCGG | 2 cut(s) | 111, 308 |
| HgaI | GACGC | 1 cut(s) | 413 |
| Hin1II | CATG | 8 cut(s) | 8, 266, 272, 323, 496, 553, 635, 949 |
| HinfI | GANTC | 3 cut(s) | 418, 539, 671 |
| HpaII | CCGG | 2 cut(s) | 111, 308 |
| HphI | GGTGA | 5 cut(s) | 282, 389, 744, 927, 1019 |
| Hpy188I | TCNGA | 5 cut(s) | 417, 473, 595, 639, 982 |
| Hpy188III | TCNNGA | 1 cut(s) | 970 |
| HpyAV | CCTTC | 4 cut(s) | 297, 372, 942, 1004 |
| HpyCH4III | ACNGT | 4 cut(s) | 145, 242, 583, 1042 |
| HpyCH4V | TGCA | 8 cut(s) | 4, 17, 235, 481, 647, 749, 868, 977 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 446, 801, 810, 919 |
| HpyF3I | CTNAG | 3 cut(s) | 185, 414, 620 |
| Hsp92II | CATG | 8 cut(s) | 8, 266, 272, 323, 496, 553, 635, 949 |
| Ksp22I | TGATCA | 1 cut(s) | 757 |
| Kzo9I | GATC | 6 cut(s) | 47, 228, 634, 757, 966, 1058 |
| LmnI | GCTCC | 2 cut(s) | 139, 415 |
| Lsp1109I | GCAGC | 3 cut(s) | 436, 484, 852 |
| LweI | GCATC | 6 cut(s) | 565, 634, 758, 822, 986, 1014 |
| MaeI | CTAG | 2 cut(s) | 372, 960 |
| MalI | GATC | 6 cut(s) | 49, 230, 636, 759, 968, 1060 |
| MboI | GATC | 6 cut(s) | 47, 228, 634, 757, 966, 1058 |
| MboII | GAAGA | 4 cut(s) | 80, 500, 596, 830 |
| MflI | RGATCY | 1 cut(s) | 1058 |
| MhlI | GDGCHC | 1 cut(s) | 193 |
| MluCI | AATT | 3 cut(s) | 35, 93, 525 |
| MlyI | GAGTC | 1 cut(s) | 680 |
| Mph1103I | ATGCAT | 1 cut(s) | 6 |
| MseI | TTAA | 4 cut(s) | 387, 563, 852, 917 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MspA1I | CMGCKG | 1 cut(s) | 865 |
| MspI | CCGG | 2 cut(s) | 111, 308 |
| MspR9I | CCNGG | 2 cut(s) | 348, 519 |
| MvaI | CCWGG | 2 cut(s) | 348, 519 |
| MvnI | CGCG | 1 cut(s) | 424 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 446, 801, 810, 919 |
| NdeI | CATATG | 2 cut(s) | 130, 823 |
| NdeII | GATC | 6 cut(s) | 47, 228, 634, 757, 966, 1058 |
| NlaIII | CATG | 8 cut(s) | 8, 266, 272, 323, 496, 553, 635, 949 |
| NlaIV | GGNNCC | 1 cut(s) | 411 |
| NsiI | ATGCAT | 1 cut(s) | 6 |
| NspI | RCATGY | 2 cut(s) | 272, 949 |
| PaqCI | CACCTGC | 2 cut(s) | 658, 713 |
| PciI | ACATGT | 1 cut(s) | 268 |
| PfeI | GAWTC | 2 cut(s) | 418, 539 |
| PkrI | GCNGC | 4 cut(s) | 16, 451, 499, 867 |
| PleI | GAGTC | 1 cut(s) | 679 |
| PpsI | GAGTC | 1 cut(s) | 679 |
| PscI | ACATGT | 1 cut(s) | 268 |
| Psp6I | CCWGG | 2 cut(s) | 346, 517 |
| PspGI | CCWGG | 2 cut(s) | 346, 517 |
| PspN4I | GGNNCC | 1 cut(s) | 411 |
| PspPI | GGNCC | 1 cut(s) | 827 |
| PsuI | RGATCY | 1 cut(s) | 1058 |
| RsaI | GTAC | 2 cut(s) | 345, 360 |
| RsaNI | GTAC | 2 cut(s) | 344, 359 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SaqAI | TTAA | 4 cut(s) | 387, 563, 852, 917 |
| SatI | GCNGC | 4 cut(s) | 15, 450, 498, 866 |
| Sau3AI | GATC | 6 cut(s) | 47, 228, 634, 757, 966, 1058 |
| Sau96I | GGNCC | 1 cut(s) | 827 |
| SchI | GAGTC | 1 cut(s) | 680 |
| ScrFI | CCNGG | 2 cut(s) | 348, 519 |
| SduI | GDGCHC | 1 cut(s) | 193 |
| SfaNI | GCATC | 6 cut(s) | 565, 634, 758, 822, 986, 1014 |
| SfcI | CTRYAG | 1 cut(s) | 901 |
| SinI | GGWCC | 1 cut(s) | 827 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| SmlI | CTYRAG | 2 cut(s) | 668, 970 |
| SmoI | CTYRAG | 2 cut(s) | 668, 970 |
| Sse9I | AATT | 3 cut(s) | 35, 93, 525 |
| SsiI | CCGC | 3 cut(s) | 422, 610, 863 |
| SspMI | CTAG | 2 cut(s) | 372, 960 |
| StyD4I | CCNGG | 2 cut(s) | 346, 517 |
| StyI | CCWWGG | 1 cut(s) | 805 |
| TaaI | ACNGT | 4 cut(s) | 145, 242, 583, 1042 |
| TaqI | TCGA | 2 cut(s) | 66, 456 |
| TasI | AATT | 3 cut(s) | 35, 93, 525 |
| TfiI | GAWTC | 2 cut(s) | 418, 539 |
| Tru1I | TTAA | 4 cut(s) | 387, 563, 852, 917 |
| Tru9I | TTAA | 4 cut(s) | 387, 563, 852, 917 |
| TscAI | CASTG | 2 cut(s) | 193, 1047 |
| TseI | GCWGC | 4 cut(s) | 14, 449, 497, 865 |
| TspDTI | ATGAA | 3 cut(s) | 21, 810, 1061 |
| TspRI | CASTG | 2 cut(s) | 193, 1047 |
| VpaK11BI | GGWCC | 1 cut(s) | 827 |
| XceI | RCATGY | 2 cut(s) | 272, 949 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 715 |
| XspI | CTAG | 2 cut(s) | 372, 960 |
| Zsp2I | ATGCAT | 1 cut(s) | 6 |