Rh1DG161000

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr1D
OG0000108
Physical Location & Seq
Forward (+)
33199174 .. 33202361
3188 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh1DG161000.1

Sequence Viewer

Length: 1575 bp
ATGGTTTCTTACGAGTATGTTCTCGGTGGAATGTTAGTTTCTTTGCTGGGCTCTGTTTTCTTCATGATCATCAGTTCTACTTTGGGAGGAAAGAAACAATTCAAGGTTTCAAGTGAAGTAAAGAGAAATGGGTTCGGAAACGGTGAGTTTCAGCCGGAAATGGAGGAAAAAAGTACTGATATCGTCATTGTGGGTGCCGGAGTTGCCGGTGCAGCTCTTGCTTACACTCTTGCCAAGGAAGGACGACGTCTGCATGTAATAGAAAGAGACTTGAGTGAGCCAGATAGAATTGTTGGGGAGCTACTGCAGCCTGGGGGATATCTCAAATTGCTTGAGTTGGGTCTCGAGGATTGTGCAAATGAGTCAATTGATGCCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTTATCCCTTGAAGAAATACAGTTCAGATGTGGCTGGGAGAAGTTTCCACAATGGCCGTTTTATTCAAAGAATGCGTGAAAAAATTGCAACTCTTTCAAATGTAAAATTGGAACAAGGATCAGTGACAACACTAATCGAGGAAAAGGGCATTGTCAAAGGGGTTATTTACAAGAACAAGGCTGGAGAGGAGCTGAGAACATATGCTCCCCTAACAGTTGTGTGTGATGGCTGCTTTTCAAATCTGCGAAAATCTCTCAGTGCTCCAAAGGTTGAAAGTCCCTCTTGTTTTGTTGGTTTGATCTTGGAGAATTGTGATCTTCCACACGCAAATCATGGGCATGTCATATTGGGAGACCCTTCTCCCATCCTGTTTTATCCTATCAGTTCCACCGAGGTTCGCTGTTTGGTGGATGTACCTGGAACAAAAGTTCCTTCAGTAGCTAGTGGTGAAATGGCCAACTATTTGAAAACAGTGGTGGCTCCTCAGGTTCCCCCACAGCTGTACAATGCTTTTATGGCCGCAGTAGAGAAAGGAAACATTAGATCCATGCAAAATAAAAGCATGGCTGCTAATCCTCTTCCTAGTCCTGGTGCAATTTTATTAGGGGATTCATTCAACATGAGGCATCCTTTAACAGGAGGAGGAATGACTGTGGCTCTTTCAGACATTGTTCTTCTCCGCGATCTTCTTAGACCCTTACATGATCTTGATGATGCACCGGCTTTGTGCAATTACCTAGAATCATTCTATACACTGCGTAAGCCTGTGTCATCTACCATAAACACATTGGCAGGTGCTTTGTACAAGGTGTTTTGTGCATCACCTGATCCGGCAAGACAGGAAATGCGTGAAGCCTGTTTCGGCTATTTGAGCCTTGGAGGCATCTGCTCCTATGGACCAGTATCTCTTCTCTCTGGTCTTAACCCTCGTCCATTACACTTGTTTCTCCATTTCTTTGCTGTTGCCATCTATGGTGTCGGCCGCTTACTGTTTCCATTCCCTTCACCTAAGCGCATGTGGCTTGGGTTTCAATTGATCTTGAGTGCATCAGGCATCATATTCCCAATCATAAAGGCTGAAGGAGTTAGACAGATGTTCTTTCCTGCCACAGTACCAGCAAACTACAGATCTCCTCCTGTTCATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

524

Amino Acids

57.02

Weight (kDa)

8.52

Isoelectric Point (pI)

45.67

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 59 - 370 5.5e-16 FAD binding domain
DAO PF01266 60 - 90 1.9e-06 FAD dependent oxidoreductase
SE PF08491 211 - 483 2.9e-117 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1211
AatII GACGTC 1 cut(s) 250
Acc36I ACCTGC 1 cut(s) 1211
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 1 cut(s) 1110
AciI CCGC 3 cut(s) 948, 1108, 1411
AclWI GGATC 3 cut(s) 553, 966, 1250
AcoI YGGCCR 4 cut(s) 481, 882, 945, 1408
AcuI CTGAAG 2 cut(s) 846, 1527
AcyI GRCGYC 1 cut(s) 247
AfaI GTAC 5 cut(s) 175, 843, 932, 1232, 1542
AfiI CCNNNNNNNGG 2 cut(s) 1016, 1064
AjnI CCWGG 3 cut(s) 310, 844, 1015
AloI GAACNNNNNNTCC 6 cut(s) 616, 648, 840, 841, 872, 873
AluBI AGCT 5 cut(s) 215, 301, 619, 869, 928
AluI AGCT 5 cut(s) 215, 301, 619, 869, 928
Alw21I GWGCWC 1 cut(s) 691
Alw26I GTCTC 3 cut(s) 261, 347, 774
AlwI GGATC 3 cut(s) 553, 966, 1250
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 4 cut(s) 481, 882, 945, 1408
ApeKI GCWGC 4 cut(s) 212, 307, 657, 995
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 1443
AspS9I GGNCC 1 cut(s) 1325
AsuHPI GGTGA 4 cut(s) 155, 887, 1242, 1425
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 1 cut(s) 1325
AxyI CCTNAGG 1 cut(s) 912
BalI TGGCCA 1 cut(s) 884
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 691
BbvI GCAGC 4 cut(s) 224, 319, 644, 982
BccI CCATC 4 cut(s) 401, 647, 800, 1403
BceAI ACGGC 1 cut(s) 468
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 3 cut(s) 312, 846, 1017
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 3 cut(s) 261, 347, 774
BfaI CTAG 3 cut(s) 870, 1011, 1166
BfmI CTRYAG 2 cut(s) 305, 1552
BfuAI ACCTGC 1 cut(s) 1211
BfuI GTATCC 1 cut(s) 409
BglI GCCNNNNNGGC 1 cut(s) 1308
BglII AGATCT 1 cut(s) 1556
BisI GCNGC 6 cut(s) 213, 308, 658, 948, 996, 1411
BlsI GCNGC 6 cut(s) 214, 309, 659, 949, 997, 1412
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 3 cut(s) 312, 846, 1017
Bme18I GGWCC 1 cut(s) 1325
BmeT110I CYCGRG 1 cut(s) 344
BmgT120I GGNCC 1 cut(s) 1325
BmiI GGNNCC 3 cut(s) 196, 909, 918
BmrFI CCNGG 3 cut(s) 312, 846, 1017
BmsI GCATC 7 cut(s) 361, 1063, 1132, 1256, 1320, 1484, 1491
BpmI CTGGAG 1 cut(s) 630
Bpu10I CCTNAGC 1 cut(s) 1437
BpuEI CTTGAG 3 cut(s) 292, 353, 1489
BsaHI GRCGYC 1 cut(s) 247
BsaI GGTCTC 2 cut(s) 347, 774
BsaJI CCNNGG 4 cut(s) 234, 311, 819, 1303
BsaXI ACNNNNNCTCC 2 cut(s) 616, 646
Bsc4I CCNNNNNNNGG 2 cut(s) 1016, 1064
Bse118I RCCGGY 2 cut(s) 206, 1147
Bse1I ACTGG 1 cut(s) 1328
Bse21I CCTNAGG 1 cut(s) 912
BseBI CCWGG 3 cut(s) 312, 846, 1017
BseDI CCNNGG 4 cut(s) 234, 311, 819, 1303
BseGI GGATG 3 cut(s) 792, 844, 1054
BseLI CCNNNNNNNGG 2 cut(s) 1016, 1064
BseMII CTCAG 3 cut(s) 611, 697, 926
BseNI ACTGG 1 cut(s) 1328
BseRI GAGGAG 4 cut(s) 629, 900, 1083, 1551
BseX3I CGGCCG 1 cut(s) 1408
BseXI GCAGC 4 cut(s) 224, 319, 644, 982
BseYI CCCAGC 2 cut(s) 46, 461
BsgI GTGCAG 1 cut(s) 231
Bsh1236I CGCG 1 cut(s) 1110
Bsh1285I CGRYCG 1 cut(s) 1411
BshFI GGCC 4 cut(s) 483, 884, 947, 1410
BshNI GGYRCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 1411
BsiHKAI GWGCWC 1 cut(s) 691
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 5 cut(s) 155, 198, 207, 1148, 1259
BslFI GGGAC 1 cut(s) 690
BslI CCNNNNNNNGG 2 cut(s) 1016, 1064
BsmAI GTCTC 3 cut(s) 261, 347, 774
BsmFI GGGAC 1 cut(s) 690
BsmI GAATGC 1 cut(s) 504
BsnI GGCC 4 cut(s) 483, 884, 947, 1410
Bso31I GGTCTC 2 cut(s) 347, 774
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 2 cut(s) 53, 691
Bsp1407I TGTACA 2 cut(s) 930, 1230
BspACI CCGC 3 cut(s) 948, 1108, 1411
BspANI GGCC 4 cut(s) 483, 884, 947, 1410
BspCNI CTCAG 3 cut(s) 612, 696, 925
BspFNI CGCG 1 cut(s) 1110
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 3 cut(s) 196, 909, 918
BspMAI CTGCAG 1 cut(s) 309
BspMI ACCTGC 1 cut(s) 1211
BspPI GGATC 3 cut(s) 553, 966, 1250
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 2 cut(s) 347, 774
BsrFI RCCGGY 2 cut(s) 206, 1147
BsrGI TGTACA 2 cut(s) 930, 1230
BsrI ACTGG 1 cut(s) 1328
BssAI RCCGGY 2 cut(s) 206, 1147
BssECI CCNNGG 4 cut(s) 234, 311, 819, 1303
BssNI GRCGYC 1 cut(s) 247
BssT1I CCWWGG 2 cut(s) 234, 1303
Bst2UI CCWGG 3 cut(s) 312, 846, 1017
Bst4CI ACNGT 8 cut(s) 143, 426, 449, 643, 901, 1081, 1419, 1540
Bst6I CTCTTC 2 cut(s) 1011, 1341
BstACI GRCGYC 1 cut(s) 247
BstAPI GCANNNNNTGC 1 cut(s) 218
BstAUI TGTACA 2 cut(s) 930, 1230
BstDEI CTNAG 5 cut(s) 620, 683, 912, 1118, 1437
BstENI CCTNNNNNAGG 1 cut(s) 1062
BstF5I GGATG 3 cut(s) 792, 844, 1054
BstFNI CGCG 1 cut(s) 1110
BstHHI GCGC 1 cut(s) 1443
BstMAI GTCTC 3 cut(s) 261, 347, 774
BstMCI CGRYCG 1 cut(s) 1411
BstMWI GCNNNNNNNGC 8 cut(s) 203, 212, 218, 307, 944, 1299, 1308, 1447
BstNI CCWGG 3 cut(s) 312, 846, 1017
BstNSI RCATGY 3 cut(s) 257, 770, 1447
BstSCI CCNGG 3 cut(s) 310, 844, 1015
BstSFI CTRYAG 2 cut(s) 305, 1552
BstUI CGCG 1 cut(s) 1110
BstV1I GCAGC 4 cut(s) 224, 319, 644, 982
BstX2I RGATCY 2 cut(s) 971, 1556
BstYI RGATCY 2 cut(s) 971, 1556
BstZI CGGCCG 1 cut(s) 1408
Bsu36I CCTNAGG 1 cut(s) 912
BsuI GTATCC 1 cut(s) 409
BsuRI GGCC 4 cut(s) 483, 884, 947, 1410
BtsCI GGATG 3 cut(s) 792, 844, 1054
BtsI GCAGTG 1 cut(s) 1181
BtsIMutI CAGTG 5 cut(s) 422, 555, 691, 906, 1181
BveI ACCTGC 1 cut(s) 1211
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 1443
Cfr10I RCCGGY 2 cut(s) 206, 1147
Cfr13I GGNCC 1 cut(s) 1325
Csp6I GTAC 5 cut(s) 174, 842, 931, 1231, 1541
CviAII CATG 9 cut(s) 64, 254, 761, 767, 976, 991, 1048, 1130, 1444
CviQI GTAC 5 cut(s) 174, 842, 931, 1231, 1541
DdeI CTNAG 5 cut(s) 620, 683, 912, 1118, 1437
EaeI YGGCCR 4 cut(s) 481, 882, 945, 1408
EagI CGGCCG 1 cut(s) 1408
Eam1104I CTCTTC 2 cut(s) 1011, 1341
EarI CTCTTC 2 cut(s) 1011, 1341
EclXI CGGCCG 1 cut(s) 1408
Eco130I CCWWGG 2 cut(s) 234, 1303
Eco24I GRGCYC 1 cut(s) 53
Eco31I GGTCTC 2 cut(s) 347, 774
Eco32I GATATC 2 cut(s) 181, 320
Eco47I GGWCC 1 cut(s) 1325
Eco52I CGGCCG 1 cut(s) 1408
Eco57I CTGAAG 2 cut(s) 846, 1527
Eco81I CCTNAGG 1 cut(s) 912
Eco88I CYCGRG 1 cut(s) 344
EcoNI CCTNNNNNAGG 1 cut(s) 1062
EcoRII CCWGG 3 cut(s) 310, 844, 1015
EcoRV GATATC 2 cut(s) 181, 320
EcoT14I CCWWGG 2 cut(s) 234, 1303
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 234, 1303
FaeI CATG 9 cut(s) 67, 257, 764, 770, 979, 994, 1051, 1133, 1447
FalI AAGNNNNNCTT 2 cut(s) 694, 726
FaqI GGGAC 1 cut(s) 690
FatI CATG 9 cut(s) 63, 253, 760, 766, 975, 990, 1047, 1129, 1443
FauNDI CATATG 1 cut(s) 628
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 6 cut(s) 213, 308, 658, 948, 996, 1411
FokI GGATG 3 cut(s) 779, 851, 1041
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 6 cut(s) 213, 308, 658, 948, 996, 1411
FspBI CTAG 3 cut(s) 870, 1011, 1166
GlaI GCGC 1 cut(s) 1442
GluI GCNGC 6 cut(s) 213, 308, 658, 948, 996, 1411
GsaI CCCAGC 2 cut(s) 50, 465
GsuI CTGGAG 1 cut(s) 630
HaeIII GGCC 4 cut(s) 483, 884, 947, 1410
HapII CCGG 5 cut(s) 155, 198, 207, 1148, 1259
HhaI GCGC 1 cut(s) 1443
Hin1I GRCGYC 1 cut(s) 247
Hin1II CATG 9 cut(s) 67, 257, 764, 770, 979, 994, 1051, 1133, 1447
Hin6I GCGC 1 cut(s) 1441
HinP1I GCGC 1 cut(s) 1441
HinfI GANTC 3 cut(s) 362, 1037, 1169
HpaII CCGG 5 cut(s) 155, 198, 207, 1148, 1259
HphI GGTGA 4 cut(s) 155, 887, 1242, 1425
Hpy188I TCNGA 3 cut(s) 137, 454, 1093
Hpy188III TCNNGA 4 cut(s) 64, 344, 1136, 1468
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 6 cut(s) 233, 406, 795, 870, 1440, 1502
HpyCH4III ACNGT 8 cut(s) 143, 426, 449, 643, 901, 1081, 1419, 1540
HpyCH4IV ACGT 1 cut(s) 247
HpyF10VI GCNNNNNNNGC 8 cut(s) 203, 212, 218, 307, 944, 1299, 1308, 1447
HpyF3I CTNAG 5 cut(s) 620, 683, 912, 1118, 1437
HpySE526I ACGT 1 cut(s) 247
Hsp92I GRCGYC 1 cut(s) 247
Hsp92II CATG 9 cut(s) 67, 257, 764, 770, 979, 994, 1051, 1133, 1447
HspAI GCGC 1 cut(s) 1441
Ksp22I TGATCA 1 cut(s) 66
LmnI GCTCC 6 cut(s) 298, 616, 637, 694, 913, 1322
Lsp1109I GCAGC 4 cut(s) 224, 319, 644, 982
LweI GCATC 7 cut(s) 361, 1063, 1132, 1256, 1320, 1484, 1491
MaeI CTAG 3 cut(s) 870, 1011, 1166
MaeII ACGT 1 cut(s) 247
MaeIII GTNAC 1 cut(s) 550
MboII GAAGA 7 cut(s) 52, 451, 737, 998, 1094, 1106, 1328
MfeI CAATTG 2 cut(s) 366, 1460
MflI RGATCY 2 cut(s) 971, 1556
MhlI GDGCHC 2 cut(s) 53, 691
MlsI TGGCCA 1 cut(s) 884
MluNI TGGCCA 1 cut(s) 884
MlyI GAGTC 1 cut(s) 371
Mox20I TGGCCA 1 cut(s) 884
MroXI GAANNNNTTC 1 cut(s) 98
MscI TGGCCA 1 cut(s) 884
MseI TTAA 3 cut(s) 1061, 1350, 1573
MslI CAYNNNNRTG 1 cut(s) 765
Msp20I TGGCCA 1 cut(s) 884
MspA1I CMGCKG 1 cut(s) 928
MspI CCGG 5 cut(s) 155, 198, 207, 1148, 1259
MspR9I CCNGG 3 cut(s) 312, 846, 1017
MunI CAATTG 2 cut(s) 366, 1460
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 3 cut(s) 312, 846, 1017
MvnI CGCG 1 cut(s) 1110
MwoI GCNNNNNNNGC 8 cut(s) 203, 212, 218, 307, 944, 1299, 1308, 1447
NdeI CATATG 1 cut(s) 628
NlaIII CATG 9 cut(s) 67, 257, 764, 770, 979, 994, 1051, 1133, 1447
NlaIV GGNNCC 3 cut(s) 196, 909, 918
NmuCI GTSAC 1 cut(s) 550
NspI RCATGY 3 cut(s) 257, 770, 1447
PaeR7I CTCGAG 1 cut(s) 344
PagI TCATGA 1 cut(s) 63
PaqCI CACCTGC 1 cut(s) 1211
PctI GAATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 2 cut(s) 1037, 1169
PflFI GACNNNGTC 1 cut(s) 246
PkrI GCNGC 6 cut(s) 214, 309, 659, 949, 997, 1412
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Psp6I CCWGG 3 cut(s) 310, 844, 1015
PspFI CCCAGC 2 cut(s) 46, 461
PspGI CCWGG 3 cut(s) 310, 844, 1015
PspN4I GGNNCC 3 cut(s) 196, 909, 918
PspPI GGNCC 1 cut(s) 1325
PstI CTGCAG 1 cut(s) 309
PsuI RGATCY 2 cut(s) 971, 1556
PsyI GACNNNGTC 1 cut(s) 246
PvuII CAGCTG 1 cut(s) 928
RsaI GTAC 5 cut(s) 175, 843, 932, 1232, 1542
RsaNI GTAC 5 cut(s) 174, 842, 931, 1231, 1541
RseI CAYNNNNRTG 1 cut(s) 765
SaqAI TTAA 3 cut(s) 1061, 1350, 1573
SatI GCNGC 6 cut(s) 213, 308, 658, 948, 996, 1411
Sau96I GGNCC 1 cut(s) 1325
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 3 cut(s) 312, 846, 1017
SduI GDGCHC 2 cut(s) 53, 691
SfaNI GCATC 7 cut(s) 361, 1063, 1132, 1256, 1320, 1484, 1491
SfcI CTRYAG 2 cut(s) 305, 1552
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 1 cut(s) 1325
SlaI CTCGAG 1 cut(s) 344
SmiMI CAYNNNNRTG 1 cut(s) 765
SmlI CTYRAG 4 cut(s) 271, 332, 344, 1468
SmoI CTYRAG 4 cut(s) 271, 332, 344, 1468
SsiI CCGC 3 cut(s) 948, 1108, 1411
SspMI CTAG 3 cut(s) 870, 1011, 1166
StyD4I CCNGG 3 cut(s) 310, 844, 1015
StyI CCWWGG 2 cut(s) 234, 1303
TaaI ACNGT 8 cut(s) 143, 426, 449, 643, 901, 1081, 1419, 1540
TaiI ACGT 1 cut(s) 250
TaqI TCGA 2 cut(s) 345, 564
TatI WGTACW 3 cut(s) 173, 930, 1230
TauI GCSGC 2 cut(s) 950, 1413
TfiI GAWTC 2 cut(s) 1037, 1169
Tru1I TTAA 3 cut(s) 1061, 1350, 1573
Tru9I TTAA 3 cut(s) 1061, 1350, 1573
TscAI CASTG 5 cut(s) 429, 555, 691, 906, 1188
TseFI GTSAC 1 cut(s) 550
TseI GCWGC 4 cut(s) 212, 307, 657, 995
Tsp45I GTSAC 1 cut(s) 550
TspDTI ATGAA 3 cut(s) 52, 1029, 1559
TspRI CASTG 5 cut(s) 429, 555, 691, 906, 1188
Tth111I GACNNNGTC 1 cut(s) 246
VpaK11BI GGWCC 1 cut(s) 1325
XagI CCTNNNNNAGG 1 cut(s) 1062
XceI RCATGY 3 cut(s) 257, 770, 1447
XcmI CCANNNNNNNNNTGG 2 cut(s) 383, 1213
XhoI CTCGAG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 3 cut(s) 870, 1011, 1166
ZraI GACGTC 1 cut(s) 248
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.