RLG00000029286

squalene

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr6
Physical Location & Seq
Reverse (-)
36056558 .. 36065602
9045 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000029286

Sequence Viewer

Length: 2016 bp
ATGGTTTCTTACGAGTATGTTCTCGGTGGAGTGTTAGTTTCTTTGCTGGGCTCTGTTTATTTCATGATCATCAGTTCTACTCTGGGAGTAAAAAAACAATTCAAGGTTTCAAGTGAAGTAACGAGTAATGGGTTAGGAAACGGTGAGTTTCAGCCGGAAATGGAGGAAAAAAGTACTGATGTTGTCATTGTCGGTGCCGGAGTTGCCGCTGCAGCTCTTGCTTACAGTCTTGCCAAGGAAGGACGACGTGTGCATGTAATCGAAAGAGACTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTCCTGCAGCCTGGGGGATATCTCAAATTGATTGTGTTGTGCCTCGAGGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAACACTGTCTTATCCCTTAAAGAAATACAGTTCAGATGTGGCTGGGAGAAGTTTCCACAATGGCCGTTTTATTCAAAGAATGCGTGAAAAAGTTGCAAGTCTTTCAAATGTAAAATTGGAACAAGGATCAGTGACAACACTAATCGAGGAAAAGGGCATTGTCAAAGGGGTTATTTACAAGAACAAGGCTGGAGAGGAGCTGAGAACATATGCTCCCCTAACAGTTGTGCGTGATGGCTGCTTTTCAAATCTGCGAAAAACTCTCAGTGCTCCAAAGGTTGAAAGTCCCTCTTGTTTTGTTGGTTTGATCTTGGAGAACTGTGACCTACCACACGCAAATCATGGGCACGTCATTTTGGGACACCCTTCTCCCATCCTGTTTTATCCTATCAGTTCCACTGAGGTTCGCTGTTTGGTGGATATACCTGGAACAAAAGTACCTTCAGTAGCTAGTGGTGAAATAGCTAACTATTTGAAAACAGTGGTGGCTCCTCAGGTCCCCCCACAACTGTACAATGCTTTTATGGCCGCAGTAGAGAAAGGAAGCATTAGATCCATGCAAAATAAAAGCATGGCTGCTAATCCTCTTCCTAGTCCTGGTGCAATTTTATTAGGGGATTCATTCAACATGAGGCATCCTTTAACAGGAGGAGGAATGACTGTGGCTCTTTCAGACATTGTTCTTCTCCGCGATCTTCTTAGAACCTTACGTGATCTTGATGATGCACCGGCTTTGTGCAATTACCTAGAATCATTCTATACACACTGCCCTGAGTCATCTACCATAAACACATTGGCAGGTGCTTTGTACAAGGTGTTTTGTGCATCACCTGATCCAGCAAGACAGGAAATGCGTGAGGCCTGTTTCGGCTATTTGAGCCTTGGAGGCATCTGCTCCTATGGACCAGTGTCTCTTCTCTCTGGTCTTAACTCTCGTCCATTACACTTGTTTCTCCATTTCTTTGCTGTTGCCATCTATGGCGTCGGCCGCTTACTGTTTCCATTCCCTTCACCTAAGCGCATATGGCTTGGGTTTCGATTGATCTTGAGTGCATCAGGCATCATACTCCCGATCATAAAGGCTGAAGGAGTTAGACAGATGTTCTTTCCTGCCACAGTACCAGCATACTACAGATCTCCTCCTCAAATCTCACCCAATGATGCTTGTTATTTTGGCTTAGTCAAGCTCAAGCCCAGAGAGACAGAGACTCTGTGTGATCTCATAAACGAGAGGAAGTCGAAGAAGAAGATGGTGAACCGAAATTCCTCATGTTGTTCTTCTCCACTCAGAATCCAAATCCTCTTAGTATTGTCGTTGCTATTCTCTCCCGCAGTTCTTGCCAAGTCCCGTCGCCCAATCAGTGACATTGAGACAAGGCAGAAGAAGACCCAATGTTATGCTGATGTTGAGAGTGGCTTGTGGGGATGGCAATGCAAGTCAACAATGATAGCAAAGGAGAATTGTGTTTTGAAATGCCTCTCTCCAACTTGTTATGAGCTCGTCTATGAGAGTGATCCGCTTGAAGAAGGAGAAAAAGATCTTCTTAGAGGACAAGAGTTCAAGTACTGTATGCATAAGTTATCTTTGGGGGAGAGCCTTGAGGGTATTAAGGGCTCCTTTAATTATTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

672

Amino Acids

73.74

Weight (kDa)

8.7

Isoelectric Point (pI)

47.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 60 - 90 2.5e-06 FAD dependent oxidoreductase
SE PF08491 200 - 471 1.2e-108 Squalene epoxidase
DUF4787 PF16029 584 - 652 3.1e-23 Domain of unknown function (DUF4787)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1175
AbsI CCTCGAGG 1 cut(s) 344
Acc36I ACCTGC 1 cut(s) 1175
AccB1I GGYRCC 1 cut(s) 194
AccII CGCG 1 cut(s) 1077
AciI CCGC 6 cut(s) 207, 915, 1075, 1375, 1716, 1904
AclWI GGATC 4 cut(s) 520, 933, 1214, 1895
AcoI YGGCCR 3 cut(s) 448, 912, 1372
AcsI RAATTY 1 cut(s) 1648
AcuI CTGAAG 2 cut(s) 813, 1491
AcyI GRCGYC 1 cut(s) 1368
AfaI GTAC 6 cut(s) 175, 825, 899, 1196, 1506, 1952
AfiI CCNNNNNNNGG 2 cut(s) 983, 1031
AflIII ACRYGT 1 cut(s) 247
AjiI CACGTC 2 cut(s) 248, 736
AjnI CCWGG 3 cut(s) 310, 811, 982
AloI GAACNNNNNNTCC 4 cut(s) 583, 615, 1634, 1666
AluBI AGCT 7 cut(s) 215, 301, 586, 836, 851, 1573, 1885
AluI AGCT 7 cut(s) 215, 301, 586, 836, 851, 1573, 1885
Alw21I GWGCWC 3 cut(s) 303, 658, 1887
Alw26I GTCTC 5 cut(s) 261, 1302, 1580, 1586, 1751
AlwI GGATC 4 cut(s) 520, 933, 1214, 1895
Ama87I CYCGRG 1 cut(s) 344
AoxI GGCC 4 cut(s) 448, 912, 1245, 1372
ApeKI GCWGC 5 cut(s) 209, 212, 307, 624, 962
ApoI RAATTY 1 cut(s) 1648
AspLEI GCGC 1 cut(s) 1407
AspS9I GGNCC 2 cut(s) 883, 1289
AsuHPI GGTGA 6 cut(s) 155, 854, 1206, 1389, 1530, 1651
AvaI CYCGRG 1 cut(s) 344
AvaII GGWCC 2 cut(s) 883, 1289
AxyI CCTNAGG 1 cut(s) 879
BaeGI GKGCMC 1 cut(s) 735
BaeI ACNNNNGTAYC 2 cut(s) 807, 840
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 4 cut(s) 53, 303, 1887, 2003
BbsI GAAGAC 1 cut(s) 1778
Bbv12I GWGCWC 3 cut(s) 303, 658, 1887
BbvI GCAGC 5 cut(s) 196, 224, 319, 611, 949
BccI CCATC 6 cut(s) 368, 614, 767, 1367, 1630, 1806
BceAI ACGGC 1 cut(s) 435
BciT130I CCWGG 3 cut(s) 312, 813, 984
BciVI GTATCC 1 cut(s) 376
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 5 cut(s) 261, 1302, 1580, 1586, 1751
BfaI CTAG 3 cut(s) 837, 978, 1133
BfmI CTRYAG 3 cut(s) 210, 305, 1516
BfuAI ACCTGC 1 cut(s) 1175
BfuI GTATCC 1 cut(s) 376
BglI GCCNNNNNGGC 1 cut(s) 1272
BglII AGATCT 2 cut(s) 1520, 1924
BisI GCNGC 8 cut(s) 207, 210, 213, 308, 625, 915, 963, 1375
BlsI GCNGC 8 cut(s) 208, 211, 214, 309, 626, 916, 964, 1376
BmcAI AGTACT 2 cut(s) 175, 1952
Bme1390I CCNGG 3 cut(s) 312, 813, 984
Bme18I GGWCC 2 cut(s) 883, 1289
BmeT110I CYCGRG 1 cut(s) 344
BmgBI CACGTC 2 cut(s) 248, 736
BmgT120I GGNCC 2 cut(s) 883, 1289
BmiI GGNNCC 4 cut(s) 196, 876, 885, 2002
BmrFI CCNGG 3 cut(s) 312, 813, 984
BmsI GCATC 7 cut(s) 1030, 1099, 1220, 1284, 1448, 1455, 1537
BoxI GACNNNNGTC 1 cut(s) 1294
BpiI GAAGAC 1 cut(s) 1778
BpmI CTGGAG 1 cut(s) 597
Bpu10I CCTNAGC 1 cut(s) 1401
BpuEI CTTGAG 4 cut(s) 292, 1453, 1559, 2006
BsaAI YACGTR 1 cut(s) 1097
BsaHI GRCGYC 1 cut(s) 1368
BsaJI CCNNGG 3 cut(s) 234, 311, 1267
BsaXI ACNNNNNCTCC 4 cut(s) 21, 51, 583, 613
Bsc4I CCNNNNNNNGG 2 cut(s) 983, 1031
Bse118I RCCGGY 1 cut(s) 1114
Bse1I ACTGG 1 cut(s) 1292
Bse21I CCTNAGG 1 cut(s) 879
Bse3DI GCAATG 1 cut(s) 1823
BseBI CCWGG 3 cut(s) 312, 813, 984
BseDI CCNNGG 3 cut(s) 234, 311, 1267
BseGI GGATG 3 cut(s) 759, 1021, 1817
BseLI CCNNNNNNNGG 2 cut(s) 983, 1031
BseMI GCAATG 1 cut(s) 1823
BseMII CTCAG 6 cut(s) 578, 664, 777, 893, 1149, 1687
BseNI ACTGG 1 cut(s) 1292
BseRI GAGGAG 5 cut(s) 596, 867, 1050, 1515, 1518
BseSI GKGCMC 1 cut(s) 735
BseX3I CGGCCG 1 cut(s) 1372
BseXI GCAGC 5 cut(s) 196, 224, 319, 611, 949
BseYI CCCAGC 2 cut(s) 46, 428
Bsh1236I CGCG 1 cut(s) 1077
Bsh1285I CGRYCG 1 cut(s) 1375
BshFI GGCC 4 cut(s) 450, 914, 1247, 1374
BshNI GGYRCC 1 cut(s) 194
BsiEI CGRYCG 1 cut(s) 1375
BsiHKAI GWGCWC 3 cut(s) 303, 658, 1887
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 3 cut(s) 155, 198, 1115
BslFI GGGAC 4 cut(s) 657, 759, 869, 1717
BslI CCNNNNNNNGG 2 cut(s) 983, 1031
BsmAI GTCTC 5 cut(s) 261, 1302, 1580, 1586, 1751
BsmFI GGGAC 4 cut(s) 657, 759, 869, 1717
BsmI GAATGC 1 cut(s) 471
BsnI GGCC 4 cut(s) 450, 914, 1247, 1374
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 6 cut(s) 53, 303, 658, 735, 1887, 2003
Bsp1407I TGTACA 2 cut(s) 897, 1194
BspACI CCGC 6 cut(s) 207, 915, 1075, 1375, 1716, 1904
BspANI GGCC 4 cut(s) 450, 914, 1247, 1374
BspCNI CTCAG 6 cut(s) 579, 663, 778, 892, 1150, 1686
BspFNI CGCG 1 cut(s) 1077
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 4 cut(s) 196, 876, 885, 2002
BspMAI CTGCAG 2 cut(s) 214, 309
BspMI ACCTGC 1 cut(s) 1175
BspPI GGATC 4 cut(s) 520, 933, 1214, 1895
BspT107I GGYRCC 1 cut(s) 194
BsrDI GCAATG 1 cut(s) 1823
BsrFI RCCGGY 1 cut(s) 1114
BsrGI TGTACA 2 cut(s) 897, 1194
BsrI ACTGG 1 cut(s) 1292
BssAI RCCGGY 1 cut(s) 1114
BssECI CCNNGG 3 cut(s) 234, 311, 1267
BssNI GRCGYC 1 cut(s) 1368
BssT1I CCWWGG 2 cut(s) 234, 1267
Bst2UI CCWGG 3 cut(s) 312, 813, 984
Bst6I CTCTTC 2 cut(s) 978, 1305
BstACI GRCGYC 1 cut(s) 1368
BstAPI GCANNNNNTGC 2 cut(s) 218, 1724
BstAUI TGTACA 2 cut(s) 897, 1194
BstBAI YACGTR 1 cut(s) 1097
BstENI CCTNNNNNAGG 1 cut(s) 1029
BstF5I GGATG 3 cut(s) 759, 1021, 1817
BstFNI CGCG 1 cut(s) 1077
BstHHI GCGC 1 cut(s) 1407
BstMAI GTCTC 5 cut(s) 261, 1302, 1580, 1586, 1751
BstMCI CGRYCG 1 cut(s) 1375
BstNI CCWGG 3 cut(s) 312, 813, 984
BstNSI RCATGY 1 cut(s) 257
BstPAI GACNNNNGTC 1 cut(s) 1294
BstSCI CCNGG 3 cut(s) 310, 811, 982
BstSFI CTRYAG 3 cut(s) 210, 305, 1516
BstSLI GKGCMC 1 cut(s) 735
BstUI CGCG 1 cut(s) 1077
BstV1I GCAGC 5 cut(s) 196, 224, 319, 611, 949
BstV2I GAAGAC 1 cut(s) 1778
BstX2I RGATCY 3 cut(s) 938, 1520, 1924
BstYI RGATCY 3 cut(s) 938, 1520, 1924
BstZI CGGCCG 1 cut(s) 1372
Bsu36I CCTNAGG 1 cut(s) 879
BsuI GTATCC 1 cut(s) 376
BsuRI GGCC 4 cut(s) 450, 914, 1247, 1374
BtrI CACGTC 2 cut(s) 248, 736
BtsCI GGATG 3 cut(s) 759, 1021, 1817
BtsI GCAGTG 1 cut(s) 1150
BtsIMutI CAGTG 8 cut(s) 389, 522, 658, 783, 873, 1150, 1299, 1753
BveI ACCTGC 1 cut(s) 1175
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 1407
Cfr10I RCCGGY 1 cut(s) 1114
Cfr13I GGNCC 2 cut(s) 883, 1289
CseI GACGC 1 cut(s) 1357
Csp6I GTAC 6 cut(s) 174, 824, 898, 1195, 1505, 1951
CviAII CATG 7 cut(s) 64, 254, 728, 943, 958, 1015, 1656
CviQI GTAC 6 cut(s) 174, 824, 898, 1195, 1505, 1951
EaeI YGGCCR 3 cut(s) 448, 912, 1372
EagI CGGCCG 1 cut(s) 1372
Eam1104I CTCTTC 2 cut(s) 978, 1305
EarI CTCTTC 2 cut(s) 978, 1305
Ecl136II GAGCTC 2 cut(s) 301, 1885
EclXI CGGCCG 1 cut(s) 1372
Eco130I CCWWGG 2 cut(s) 234, 1267
Eco147I AGGCCT 1 cut(s) 1247
Eco24I GRGCYC 4 cut(s) 53, 303, 1887, 2003
Eco32I GATATC 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 883, 1289
Eco52I CGGCCG 1 cut(s) 1372
Eco53kI GAGCTC 2 cut(s) 301, 1885
Eco57I CTGAAG 2 cut(s) 813, 1491
Eco81I CCTNAGG 1 cut(s) 879
Eco88I CYCGRG 1 cut(s) 344
EcoICRI GAGCTC 2 cut(s) 301, 1885
EcoNI CCTNNNNNAGG 1 cut(s) 1029
EcoO109I RGGNCCY 1 cut(s) 883
EcoRII CCWGG 3 cut(s) 310, 811, 982
EcoRV GATATC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 234, 1267
EcoT22I ATGCAT 1 cut(s) 1962
EcoT38I GRGCYC 4 cut(s) 53, 303, 1887, 2003
ErhI CCWWGG 2 cut(s) 234, 1267
FaeI CATG 7 cut(s) 67, 257, 731, 946, 961, 1018, 1659
FalI AAGNNNNNCTT 5 cut(s) 661, 693, 1914, 1946, 1988
FaqI GGGAC 4 cut(s) 657, 759, 869, 1717
FatI CATG 7 cut(s) 63, 253, 727, 942, 957, 1014, 1655
FauI CCCGC 1 cut(s) 1723
FauNDI CATATG 2 cut(s) 595, 1409
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 8 cut(s) 207, 210, 213, 308, 625, 915, 963, 1375
FokI GGATG 3 cut(s) 746, 1008, 1824
FriOI GRGCYC 4 cut(s) 53, 303, 1887, 2003
Fsp4HI GCNGC 8 cut(s) 207, 210, 213, 308, 625, 915, 963, 1375
FspBI CTAG 3 cut(s) 837, 978, 1133
GlaI GCGC 1 cut(s) 1406
GluI GCNGC 8 cut(s) 207, 210, 213, 308, 625, 915, 963, 1375
GsaI CCCAGC 2 cut(s) 50, 432
GsuI CTGGAG 1 cut(s) 597
HaeIII GGCC 4 cut(s) 450, 914, 1247, 1374
HapII CCGG 3 cut(s) 155, 198, 1115
HgaI GACGC 1 cut(s) 1357
HhaI GCGC 1 cut(s) 1407
Hin1I GRCGYC 1 cut(s) 1368
Hin1II CATG 7 cut(s) 67, 257, 731, 946, 961, 1018, 1659
Hin6I GCGC 1 cut(s) 1405
HinP1I GCGC 1 cut(s) 1405
HincII GTYRAC 1 cut(s) 1827
HindII GTYRAC 1 cut(s) 1827
HinfI GANTC 5 cut(s) 1004, 1136, 1160, 1594, 1677
HpaII CCGG 3 cut(s) 155, 198, 1115
HphI GGTGA 6 cut(s) 155, 854, 1206, 1389, 1530, 1651
Hpy166II GTNNAC 2 cut(s) 1642, 1827
Hpy188I TCNGA 3 cut(s) 421, 1060, 1676
Hpy188III TCNNGA 4 cut(s) 64, 1103, 1432, 1456
Hpy8I GTNNAC 2 cut(s) 1642, 1827
Hpy99I CGWCG 3 cut(s) 249, 1373, 1740
HpyAV CCTTC 7 cut(s) 233, 373, 762, 837, 1404, 1466, 1907
HpyCH4IV ACGT 3 cut(s) 247, 735, 1096
HpySE526I ACGT 3 cut(s) 247, 735, 1096
Hsp92I GRCGYC 1 cut(s) 1368
Hsp92II CATG 7 cut(s) 67, 257, 731, 946, 961, 1018, 1659
HspAI GCGC 1 cut(s) 1405
Ksp22I TGATCA 1 cut(s) 66
LmnI GCTCC 8 cut(s) 298, 306, 583, 604, 661, 880, 1286, 2006
Lsp1109I GCAGC 5 cut(s) 196, 224, 319, 611, 949
LweI GCATC 7 cut(s) 1030, 1099, 1220, 1284, 1448, 1455, 1537
MaeI CTAG 3 cut(s) 837, 978, 1133
MaeII ACGT 3 cut(s) 247, 735, 1096
MaeIII GTNAC 4 cut(s) 118, 517, 707, 1748
MflI RGATCY 3 cut(s) 938, 1520, 1924
MhlI GDGCHC 6 cut(s) 53, 303, 658, 735, 1887, 2003
MluCI AATT 9 cut(s) 98, 288, 326, 500, 990, 1126, 1648, 1846, 2008
MlyI GAGTC 2 cut(s) 1169, 1588
MmeI TCCRAC 1 cut(s) 1895
Mph1103I ATGCAT 1 cut(s) 1962
MseI TTAA 6 cut(s) 404, 1028, 1314, 1995, 2007, 2014
MspA1I CMGCKG 1 cut(s) 209
MspI CCGG 3 cut(s) 155, 198, 1115
MspR9I CCNGG 3 cut(s) 312, 813, 984
Mva1269I GAATGC 1 cut(s) 471
MvaI CCWGG 3 cut(s) 312, 813, 984
MvnI CGCG 1 cut(s) 1077
NdeI CATATG 2 cut(s) 595, 1409
NlaIII CATG 7 cut(s) 67, 257, 731, 946, 961, 1018, 1659
NlaIV GGNNCC 4 cut(s) 196, 876, 885, 2002
NmuCI GTSAC 3 cut(s) 517, 707, 1748
NsiI ATGCAT 1 cut(s) 1962
NspI RCATGY 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 344
PagI TCATGA 1 cut(s) 63
PaqCI CACCTGC 1 cut(s) 1175
PceI AGGCCT 1 cut(s) 1247
PctI GAATGC 1 cut(s) 471
PfeI GAWTC 3 cut(s) 1004, 1136, 1677
PkrI GCNGC 8 cut(s) 208, 211, 214, 309, 626, 916, 964, 1376
PleI GAGTC 2 cut(s) 1168, 1588
PpsI GAGTC 2 cut(s) 1168, 1588
Ppu21I YACGTR 1 cut(s) 1097
PpuMI RGGWCCY 1 cut(s) 883
PshAI GACNNNNGTC 1 cut(s) 1294
Psp124BI GAGCTC 2 cut(s) 303, 1887
Psp5II RGGWCCY 1 cut(s) 883
Psp6I CCWGG 3 cut(s) 310, 811, 982
PspFI CCCAGC 2 cut(s) 46, 428
PspGI CCWGG 3 cut(s) 310, 811, 982
PspN4I GGNNCC 4 cut(s) 196, 876, 885, 2002
PspPI GGNCC 2 cut(s) 883, 1289
PspPPI RGGWCCY 1 cut(s) 883
PspXI VCTCGAGB 1 cut(s) 344
PstI CTGCAG 2 cut(s) 214, 309
PsuI RGATCY 3 cut(s) 938, 1520, 1924
RsaI GTAC 6 cut(s) 175, 825, 899, 1196, 1506, 1952
RsaNI GTAC 6 cut(s) 174, 824, 898, 1195, 1505, 1951
SacI GAGCTC 2 cut(s) 303, 1887
SaqAI TTAA 6 cut(s) 404, 1028, 1314, 1995, 2007, 2014
SatI GCNGC 8 cut(s) 207, 210, 213, 308, 625, 915, 963, 1375
Sau96I GGNCC 2 cut(s) 883, 1289
ScaI AGTACT 2 cut(s) 175, 1952
SchI GAGTC 2 cut(s) 1169, 1588
ScrFI CCNGG 3 cut(s) 312, 813, 984
SduI GDGCHC 6 cut(s) 53, 303, 658, 735, 1887, 2003
SfaNI GCATC 7 cut(s) 1030, 1099, 1220, 1284, 1448, 1455, 1537
SfcI CTRYAG 3 cut(s) 210, 305, 1516
Sfr274I CTCGAG 1 cut(s) 344
SinI GGWCC 2 cut(s) 883, 1289
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 5 cut(s) 271, 344, 1432, 1574, 1985
SmoI CTYRAG 5 cut(s) 271, 344, 1432, 1574, 1985
Sse9I AATT 9 cut(s) 98, 288, 326, 500, 990, 1126, 1648, 1846, 2008
SseBI AGGCCT 1 cut(s) 1247
SsiI CCGC 6 cut(s) 207, 915, 1075, 1375, 1716, 1904
SspMI CTAG 3 cut(s) 837, 978, 1133
SstI GAGCTC 2 cut(s) 303, 1887
StuI AGGCCT 1 cut(s) 1247
StyD4I CCNGG 3 cut(s) 310, 811, 982
StyI CCWWGG 2 cut(s) 234, 1267
TaiI ACGT 3 cut(s) 250, 738, 1099
TaqI TCGA 5 cut(s) 261, 345, 531, 1423, 1625
TasI AATT 9 cut(s) 98, 288, 326, 500, 990, 1126, 1648, 1846, 2008
TatI WGTACW 4 cut(s) 173, 897, 1194, 1950
TauI GCSGC 3 cut(s) 209, 917, 1377
TfiI GAWTC 3 cut(s) 1004, 1136, 1677
Tru1I TTAA 6 cut(s) 404, 1028, 1314, 1995, 2007, 2014
Tru9I TTAA 6 cut(s) 404, 1028, 1314, 1995, 2007, 2014
TscAI CASTG 8 cut(s) 396, 522, 658, 790, 873, 1157, 1299, 1753
TseFI GTSAC 3 cut(s) 517, 707, 1748
TseI GCWGC 5 cut(s) 209, 212, 307, 624, 962
Tsp45I GTSAC 3 cut(s) 517, 707, 1748
TspDTI ATGAA 2 cut(s) 52, 996
TspRI CASTG 8 cut(s) 396, 522, 658, 790, 873, 1157, 1299, 1753
VpaK11BI GGWCC 2 cut(s) 883, 1289
XagI CCTNNNNNAGG 1 cut(s) 1029
XapI RAATTY 1 cut(s) 1648
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 1177
XhoI CTCGAG 1 cut(s) 344
XspI CTAG 3 cut(s) 837, 978, 1133
ZrmI AGTACT 2 cut(s) 175, 1952
Zsp2I ATGCAT 1 cut(s) 1962
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.