squalene
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Thi4 | PF01946 | 6 - 40 | 4.8e-06 | Thi4 family |
| FAD_binding_3 | PF01494 | 7 - 96 | 7.8e-08 | FAD binding domain |
| DAO | PF01266 | 8 - 38 | 9.2e-09 | FAD dependent oxidoreductase |
| FAD_binding_2 | PF00890 | 8 - 37 | 2.2e-06 | FAD binding domain |
| NAD_binding_8 | PF13450 | 11 - 37 | 4.3e-07 | NAD(P)-binding Rossmann-like domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 38 |
| AclWI | GGATC | 1 cut(s) | 415 |
| AcyI | GRCGYC | 2 cut(s) | 39, 88 |
| AfaI | GTAC | 2 cut(s) | 19, 96 |
| AflIII | ACRYGT | 1 cut(s) | 97 |
| AjnI | CCWGG | 1 cut(s) | 154 |
| AloI | GAACNNNNNNTCC | 1 cut(s) | 477 |
| AluBI | AGCT | 3 cut(s) | 59, 145, 356 |
| AluI | AGCT | 3 cut(s) | 59, 145, 356 |
| Alw26I | GTCTC | 1 cut(s) | 105 |
| AlwI | GGATC | 1 cut(s) | 415 |
| ApeKI | GCWGC | 3 cut(s) | 56, 151, 356 |
| AspLEI | GCGC | 1 cut(s) | 41 |
| BanI | GGYRCC | 1 cut(s) | 38 |
| BbvI | GCAGC | 3 cut(s) | 68, 163, 343 |
| BccI | CCATC | 1 cut(s) | 245 |
| BceAI | ACGGC | 1 cut(s) | 75 |
| BciT130I | CCWGG | 1 cut(s) | 156 |
| BcoDI | GTCTC | 1 cut(s) | 105 |
| BfoI | RGCGCY | 1 cut(s) | 42 |
| BisI | GCNGC | 3 cut(s) | 57, 152, 357 |
| BlsI | GCNGC | 3 cut(s) | 58, 153, 358 |
| Bme1390I | CCNGG | 1 cut(s) | 156 |
| BmiI | GGNNCC | 1 cut(s) | 40 |
| BmrFI | CCNGG | 1 cut(s) | 156 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BpmI | CTGGAG | 1 cut(s) | 492 |
| BpuEI | CTTGAG | 2 cut(s) | 136, 209 |
| BsaHI | GRCGYC | 2 cut(s) | 39, 88 |
| BsaJI | CCNNGG | 3 cut(s) | 78, 155, 279 |
| BsaXI | ACNNNNNCTCC | 1 cut(s) | 477 |
| BseBI | CCWGG | 1 cut(s) | 156 |
| BseDI | CCNNGG | 3 cut(s) | 78, 155, 279 |
| BseGI | GGATG | 1 cut(s) | 333 |
| BseMII | CTCAG | 1 cut(s) | 233 |
| BseRI | GAGGAG | 1 cut(s) | 491 |
| BseXI | GCAGC | 3 cut(s) | 68, 163, 343 |
| BshNI | GGYRCC | 1 cut(s) | 38 |
| BsiSI | CCGG | 2 cut(s) | 42, 51 |
| BsmAI | GTCTC | 1 cut(s) | 105 |
| BsmI | GAATGC | 1 cut(s) | 348 |
| Bsp1407I | TGTACA | 1 cut(s) | 94 |
| Bsp143I | GATC | 2 cut(s) | 407, 462 |
| BspCNI | CTCAG | 1 cut(s) | 232 |
| BspLI | GGNNCC | 1 cut(s) | 40 |
| BspPI | GGATC | 1 cut(s) | 415 |
| BspT107I | GGYRCC | 1 cut(s) | 38 |
| BsrGI | TGTACA | 1 cut(s) | 94 |
| BssECI | CCNNGG | 3 cut(s) | 78, 155, 279 |
| BssMI | GATC | 2 cut(s) | 407, 462 |
| BssNI | GRCGYC | 2 cut(s) | 39, 88 |
| BssT1I | CCWWGG | 2 cut(s) | 78, 279 |
| Bst2UI | CCWGG | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 2 cut(s) | 197, 293 |
| Bst6I | CTCTTC | 1 cut(s) | 3 |
| BstACI | GRCGYC | 2 cut(s) | 39, 88 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 62 |
| BstAUI | TGTACA | 1 cut(s) | 94 |
| BstC8I | GCNNGC | 1 cut(s) | 307 |
| BstDEI | CTNAG | 2 cut(s) | 219, 365 |
| BstF5I | GGATG | 1 cut(s) | 333 |
| BstH2I | RGCGCY | 1 cut(s) | 42 |
| BstHHI | GCGC | 1 cut(s) | 41 |
| BstKTI | GATC | 2 cut(s) | 410, 465 |
| BstMAI | GTCTC | 1 cut(s) | 105 |
| BstMBI | GATC | 2 cut(s) | 407, 462 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 151 |
| BstNI | CCWGG | 1 cut(s) | 156 |
| BstNSI | RCATGY | 1 cut(s) | 101 |
| BstSCI | CCNGG | 1 cut(s) | 154 |
| BstV1I | GCAGC | 3 cut(s) | 68, 163, 343 |
| BtsCI | GGATG | 1 cut(s) | 333 |
| Cac8I | GCNNGC | 1 cut(s) | 307 |
| CfoI | GCGC | 1 cut(s) | 41 |
| CseI | GACGC | 1 cut(s) | 96 |
| Csp6I | GTAC | 2 cut(s) | 18, 95 |
| CviAII | CATG | 1 cut(s) | 98 |
| CviJI | RGCY | 9 cut(s) | 59, 124, 145, 154, 162, 234, 305, 356, 470 |
| CviKI_1 | RGCY | 9 cut(s) | 59, 124, 145, 154, 162, 234, 305, 356, 470 |
| CviQI | GTAC | 2 cut(s) | 18, 95 |
| DdeI | CTNAG | 2 cut(s) | 219, 365 |
| DinI | GGCGCC | 1 cut(s) | 40 |
| DpnI | GATC | 2 cut(s) | 409, 464 |
| DpnII | GATC | 2 cut(s) | 407, 462 |
| Eam1104I | CTCTTC | 1 cut(s) | 3 |
| EarI | CTCTTC | 1 cut(s) | 3 |
| Eco130I | CCWWGG | 2 cut(s) | 78, 279 |
| EcoRII | CCWGG | 1 cut(s) | 154 |
| EcoT14I | CCWWGG | 2 cut(s) | 78, 279 |
| EgeI | GGCGCC | 1 cut(s) | 40 |
| EheI | GGCGCC | 1 cut(s) | 40 |
| ErhI | CCWWGG | 2 cut(s) | 78, 279 |
| FaeI | CATG | 1 cut(s) | 101 |
| FaiI | YATR | 6 cut(s) | 99, 237, 324, 384, 489, 491 |
| FatI | CATG | 1 cut(s) | 97 |
| FauNDI | CATATG | 1 cut(s) | 489 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 152, 357 |
| FokI | GGATG | 1 cut(s) | 320 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 152, 357 |
| GlaI | GCGC | 1 cut(s) | 40 |
| GluI | GCNGC | 3 cut(s) | 57, 152, 357 |
| GsuI | CTGGAG | 1 cut(s) | 492 |
| HaeII | RGCGCY | 1 cut(s) | 42 |
| HapII | CCGG | 2 cut(s) | 42, 51 |
| HgaI | GACGC | 1 cut(s) | 96 |
| HhaI | GCGC | 1 cut(s) | 41 |
| Hin1I | GRCGYC | 2 cut(s) | 39, 88 |
| Hin1II | CATG | 1 cut(s) | 101 |
| Hin6I | GCGC | 1 cut(s) | 39 |
| HinP1I | GCGC | 1 cut(s) | 39 |
| HinfI | GANTC | 1 cut(s) | 206 |
| HpaII | CCGG | 2 cut(s) | 42, 51 |
| Hpy166II | GTNNAC | 1 cut(s) | 95 |
| Hpy188I | TCNGA | 2 cut(s) | 222, 298 |
| Hpy188III | TCNNGA | 1 cut(s) | 188 |
| Hpy8I | GTNNAC | 1 cut(s) | 95 |
| HpyAV | CCTTC | 2 cut(s) | 77, 250 |
| HpyCH4III | ACNGT | 2 cut(s) | 197, 293 |
| HpyCH4V | TGCA | 3 cut(s) | 151, 200, 359 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 151 |
| HpyF3I | CTNAG | 2 cut(s) | 219, 365 |
| Hsp92I | GRCGYC | 2 cut(s) | 39, 88 |
| Hsp92II | CATG | 1 cut(s) | 101 |
| HspAI | GCGC | 1 cut(s) | 39 |
| KasI | GGCGCC | 1 cut(s) | 38 |
| Kzo9I | GATC | 2 cut(s) | 407, 462 |
| LmnI | GCTCC | 3 cut(s) | 53, 142, 498 |
| LpnPI | CCDG | 8 cut(s) | 55, 64, 138, 141, 168, 291, 389, 456 |
| Lsp1109I | GCAGC | 3 cut(s) | 68, 163, 343 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeIII | GTNAC | 1 cut(s) | 412 |
| MalI | GATC | 2 cut(s) | 409, 464 |
| MboI | GATC | 2 cut(s) | 407, 462 |
| MboII | GAAGA | 2 cut(s) | 20, 440 |
| MluCI | AATT | 5 cut(s) | 132, 170, 266, 395, 453 |
| Mly113I | GGCGCC | 1 cut(s) | 39 |
| MlyI | GAGTC | 1 cut(s) | 215 |
| MnlI | CCTC | 3 cut(s) | 184, 384, 469 |
| MspI | CCGG | 2 cut(s) | 42, 51 |
| MspR9I | CCNGG | 1 cut(s) | 156 |
| Mva1269I | GAATGC | 1 cut(s) | 348 |
| MvaI | CCWGG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 151 |
| NarI | GGCGCC | 1 cut(s) | 39 |
| NdeI | CATATG | 1 cut(s) | 489 |
| NdeII | GATC | 2 cut(s) | 407, 462 |
| NlaIII | CATG | 1 cut(s) | 101 |
| NlaIV | GGNNCC | 1 cut(s) | 40 |
| NspI | RCATGY | 1 cut(s) | 101 |
| PciI | ACATGT | 1 cut(s) | 97 |
| PctI | GAATGC | 1 cut(s) | 348 |
| PkrI | GCNGC | 3 cut(s) | 58, 153, 358 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PluTI | GGCGCC | 1 cut(s) | 42 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| PscI | ACATGT | 1 cut(s) | 97 |
| Psp6I | CCWGG | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 154 |
| PspN4I | GGNNCC | 1 cut(s) | 40 |
| RsaI | GTAC | 2 cut(s) | 19, 96 |
| RsaNI | GTAC | 2 cut(s) | 18, 95 |
| SatI | GCNGC | 3 cut(s) | 57, 152, 357 |
| Sau3AI | GATC | 2 cut(s) | 407, 462 |
| SchI | GAGTC | 1 cut(s) | 215 |
| ScrFI | CCNGG | 1 cut(s) | 156 |
| SetI | ASST | 4 cut(s) | 61, 147, 358, 451 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SfoI | GGCGCC | 1 cut(s) | 40 |
| SmlI | CTYRAG | 2 cut(s) | 115, 188 |
| SmoI | CTYRAG | 2 cut(s) | 115, 188 |
| Sse9I | AATT | 5 cut(s) | 132, 170, 266, 395, 453 |
| SspDI | GGCGCC | 1 cut(s) | 38 |
| StyD4I | CCNGG | 1 cut(s) | 154 |
| StyI | CCWWGG | 2 cut(s) | 78, 279 |
| TaaI | ACNGT | 2 cut(s) | 197, 293 |
| TaqI | TCGA | 2 cut(s) | 105, 426 |
| TasI | AATT | 5 cut(s) | 132, 170, 266, 395, 453 |
| TatI | WGTACW | 2 cut(s) | 17, 94 |
| TseI | GCWGC | 3 cut(s) | 56, 151, 356 |
| XceI | RCATGY | 1 cut(s) | 101 |