Rorug05G0521700

Squalene monooxygenase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Forward (+)
70737586 .. 70738032
447 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0521700.1

Sequence Viewer

Length: 447 bp
ATGATGCCGGAAAATCCCCAATCCCGCCACAGAAAAATTGTGAAGACCCTCTACAAAGCCCTAGCACACAGAGACACCAGAACCACCGTAATGCTAGTGGCTCCAGATCTTGAGTGGTGGTTCCACGGACCGCCGCAGTGCCAGCACATGATGAAGATGCTAACCGGGCAGTCGAGGCACTTGGAGTTCAAGTTCCAGCCCCGAAGCCTCAAGGCGGTCGGGGACCGTGTGGTGGCGGAGGGATGGGAAGGTAAGAAGGCATATTGGGTGCAGGTGTGGACTGTTAACAAGGATGGGATGATCACGCAGTTGCGCGAGTATTTCAACACTTGGGTGACGCTGATGGTTAGGGTTTCGGAGGCCGAGGACGAGATGGTGAAGCTGTGGCAGAGTGATTCAAAGGAGCGGTTCCGGCGCTCGTTGCCGGATATTGTGTTAGCTATCTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

148

Amino Acids

17.57

Weight (kDa)

9.62

Isoelectric Point (pI)

38.26

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 51 - 148 5e-27 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 262
Acc36I ACCTGC 1 cut(s) 262
AccBSI CCGCTC 1 cut(s) 406
AccII CGCG 1 cut(s) 315
AciI CCGC 6 cut(s) 25, 131, 134, 215, 236, 406
AfiI CCNNNNNNNGG 2 cut(s) 214, 232
AgsI TTSAA 3 cut(s) 190, 325, 399
AleI CACNNNNGTG 1 cut(s) 332
AloI GAACNNNNNNTCC 2 cut(s) 176, 208
AluBI AGCT 2 cut(s) 382, 440
AluI AGCT 2 cut(s) 382, 440
Alw26I GTCTC 1 cut(s) 66
AoxI GGCC 1 cut(s) 360
AspLEI GCGC 2 cut(s) 315, 417
AspS9I GGNCC 2 cut(s) 128, 223
AsuC2I CCSGG 1 cut(s) 166
AsuHPI GGTGA 2 cut(s) 346, 388
AvaII GGWCC 2 cut(s) 128, 223
BarI GAAGNNNNNNTAC 2 cut(s) 35, 67
BbsI GAAGAC 1 cut(s) 50
BccI CCATC 4 cut(s) 237, 287, 337, 367
BclI TGATCA 1 cut(s) 300
BcnI CCSGG 1 cut(s) 166
BcoDI GTCTC 1 cut(s) 66
BfaI CTAG 2 cut(s) 62, 95
BfoI RGCGCY 1 cut(s) 418
BfuAI ACCTGC 1 cut(s) 262
BglII AGATCT 1 cut(s) 106
BisI GCNGC 1 cut(s) 134
BlsI GCNGC 1 cut(s) 135
Bme1390I CCNGG 1 cut(s) 166
Bme18I GGWCC 2 cut(s) 128, 223
BmgT120I GGNCC 2 cut(s) 128, 223
BmiI GGNNCC 4 cut(s) 102, 122, 224, 410
BmrFI CCNGG 1 cut(s) 166
BmsI GCATC 1 cut(s) 147
BpiI GAAGAC 1 cut(s) 50
BpmI CTGGAG 1 cut(s) 87
BpuEI CTTGAG 2 cut(s) 131, 194
BpuMI CCSGG 1 cut(s) 166
BsaJI CCNNGG 2 cut(s) 124, 363
BsaXI ACNNNNNCTCC 2 cut(s) 176, 206
Bsc4I CCNNNNNNNGG 2 cut(s) 214, 232
BseDI CCNNGG 2 cut(s) 124, 363
BseGI GGATG 3 cut(s) 248, 298, 303
BseLI CCNNNNNNNGG 2 cut(s) 214, 232
BsgI GTGCAG 1 cut(s) 290
Bsh1236I CGCG 1 cut(s) 315
Bsh1285I CGRYCG 1 cut(s) 219
BshFI GGCC 1 cut(s) 362
BsiEI CGRYCG 1 cut(s) 219
BsiSI CCGG 4 cut(s) 8, 165, 412, 425
BslFI GGGAC 1 cut(s) 236
BslI CCNNNNNNNGG 2 cut(s) 214, 232
BsmAI GTCTC 1 cut(s) 66
BsmFI GGGAC 1 cut(s) 236
BsnI GGCC 1 cut(s) 362
Bsp143I GATC 2 cut(s) 106, 300
BspACI CCGC 6 cut(s) 25, 131, 134, 215, 236, 406
BspANI GGCC 1 cut(s) 362
BspFNI CGCG 1 cut(s) 315
BspLI GGNNCC 4 cut(s) 102, 122, 224, 410
BspMI ACCTGC 1 cut(s) 262
BsrBI CCGCTC 1 cut(s) 406
BssECI CCNNGG 2 cut(s) 124, 363
BssMI GATC 2 cut(s) 106, 300
Bst4CI ACNGT 3 cut(s) 88, 227, 283
BstC8I GCNNGC 1 cut(s) 143
BstDSI CCRYGG 1 cut(s) 124
BstF5I GGATG 3 cut(s) 248, 298, 303
BstFNI CGCG 1 cut(s) 315
BstH2I RGCGCY 1 cut(s) 418
BstHHI GCGC 2 cut(s) 315, 417
BstKTI GATC 2 cut(s) 109, 303
BstMAI GTCTC 1 cut(s) 66
BstMBI GATC 2 cut(s) 106, 300
BstMCI CGRYCG 1 cut(s) 219
BstMWI GCNNNNNNNGC 5 cut(s) 142, 166, 175, 412, 421
BstSCI CCNGG 1 cut(s) 164
BstUI CGCG 1 cut(s) 315
BstV2I GAAGAC 1 cut(s) 50
BstX2I RGATCY 1 cut(s) 106
BstYI RGATCY 1 cut(s) 106
BsuRI GGCC 1 cut(s) 362
BtgI CCRYGG 1 cut(s) 124
BtsCI GGATG 3 cut(s) 248, 298, 303
BtsI GCAGTG 1 cut(s) 143
BtsIMutI CAGTG 1 cut(s) 143
BveI ACCTGC 1 cut(s) 262
Cac8I GCNNGC 1 cut(s) 143
CfoI GCGC 2 cut(s) 315, 417
Cfr13I GGNCC 2 cut(s) 128, 223
CpoI CGGWCCG 1 cut(s) 128
CseI GACGC 1 cut(s) 346
CspI CGGWCCG 1 cut(s) 128
CviAII CATG 1 cut(s) 148
CviJI RGCY 7 cut(s) 59, 101, 199, 207, 362, 382, 440
CviKI_1 RGCY 7 cut(s) 59, 101, 199, 207, 362, 382, 440
DpnI GATC 2 cut(s) 108, 302
DpnII GATC 2 cut(s) 106, 300
EciI GGCGGA 1 cut(s) 251
Eco47I GGWCC 2 cut(s) 128, 223
FaeI CATG 1 cut(s) 151
FaiI YATR 2 cut(s) 149, 262
FaqI GGGAC 1 cut(s) 236
FatI CATG 1 cut(s) 147
FauI CCCGC 1 cut(s) 32
FbaI TGATCA 1 cut(s) 300
Fnu4HI GCNGC 1 cut(s) 134
FokI GGATG 3 cut(s) 255, 305, 310
Fsp4HI GCNGC 1 cut(s) 134
FspBI CTAG 2 cut(s) 62, 95
GlaI GCGC 2 cut(s) 314, 416
GluI GCNGC 1 cut(s) 134
GsuI CTGGAG 1 cut(s) 87
HaeII RGCGCY 1 cut(s) 418
HaeIII GGCC 1 cut(s) 362
HapII CCGG 4 cut(s) 8, 165, 412, 425
HgaI GACGC 1 cut(s) 346
HhaI GCGC 2 cut(s) 315, 417
Hin1II CATG 1 cut(s) 151
Hin6I GCGC 2 cut(s) 313, 415
HinP1I GCGC 2 cut(s) 313, 415
HincII GTYRAC 1 cut(s) 286
HindII GTYRAC 1 cut(s) 286
HinfI GANTC 1 cut(s) 395
HpaI GTTAAC 1 cut(s) 286
HpaII CCGG 4 cut(s) 8, 165, 412, 425
HphI GGTGA 2 cut(s) 346, 388
Hpy166II GTNNAC 2 cut(s) 279, 286
Hpy188I TCNGA 2 cut(s) 358, 446
Hpy188III TCNNGA 2 cut(s) 104, 110
Hpy8I GTNNAC 2 cut(s) 279, 286
HpyAV CCTTC 2 cut(s) 242, 250
HpyCH4III ACNGT 3 cut(s) 88, 227, 283
HpyCH4V TGCA 1 cut(s) 271
HpyF10VI GCNNNNNNNGC 5 cut(s) 142, 166, 175, 412, 421
Hsp92II CATG 1 cut(s) 151
HspAI GCGC 2 cut(s) 313, 415
Ksp22I TGATCA 1 cut(s) 300
KspAI GTTAAC 1 cut(s) 286
Kzo9I GATC 2 cut(s) 106, 300
LmnI GCTCC 2 cut(s) 106, 403
LpnPI CCDG 9 cut(s) 21, 91, 117, 155, 178, 209, 257, 425, 438
LweI GCATC 1 cut(s) 147
MaeI CTAG 2 cut(s) 62, 95
MaeIII GTNAC 1 cut(s) 334
MalI GATC 2 cut(s) 108, 302
MbiI CCGCTC 1 cut(s) 406
MboI GATC 2 cut(s) 106, 300
MboII GAAGA 2 cut(s) 55, 166
MflI RGATCY 1 cut(s) 106
MluCI AATT 1 cut(s) 36
MnlI CCTC 6 cut(s) 59, 168, 218, 232, 352, 358
MseI TTAA 1 cut(s) 285
MslI CAYNNNNRTG 2 cut(s) 89, 332
MspI CCGG 4 cut(s) 8, 165, 412, 425
MspR9I CCNGG 1 cut(s) 166
MvnI CGCG 1 cut(s) 315
MwoI GCNNNNNNNGC 5 cut(s) 142, 166, 175, 412, 421
NciI CCSGG 1 cut(s) 166
NdeII GATC 2 cut(s) 106, 300
NlaIII CATG 1 cut(s) 151
NlaIV GGNNCC 4 cut(s) 102, 122, 224, 410
NmeAIII GCCGAG 1 cut(s) 388
NmuCI GTSAC 1 cut(s) 334
OliI CACNNNNGTG 1 cut(s) 332
PaqCI CACCTGC 1 cut(s) 262
PfeI GAWTC 1 cut(s) 395
PkrI GCNGC 1 cut(s) 135
PspN4I GGNNCC 4 cut(s) 102, 122, 224, 410
PspPI GGNCC 2 cut(s) 128, 223
PsuI RGATCY 1 cut(s) 106
RseI CAYNNNNRTG 2 cut(s) 89, 332
Rsr2I CGGWCCG 1 cut(s) 128
RsrII CGGWCCG 1 cut(s) 128
SaqAI TTAA 1 cut(s) 285
SatI GCNGC 1 cut(s) 134
Sau3AI GATC 2 cut(s) 106, 300
Sau96I GGNCC 2 cut(s) 128, 223
ScrFI CCNGG 1 cut(s) 166
SetI ASST 4 cut(s) 253, 276, 384, 442
SfaNI GCATC 1 cut(s) 147
SinI GGWCC 2 cut(s) 128, 223
SmiMI CAYNNNNRTG 2 cut(s) 89, 332
SmlI CTYRAG 2 cut(s) 110, 209
SmoI CTYRAG 2 cut(s) 110, 209
Sse9I AATT 1 cut(s) 36
SsiI CCGC 6 cut(s) 25, 131, 134, 215, 236, 406
SspMI CTAG 2 cut(s) 62, 95
StyD4I CCNGG 1 cut(s) 164
TaaI ACNGT 3 cut(s) 88, 227, 283
TaqI TCGA 1 cut(s) 173
TasI AATT 1 cut(s) 36
TauI GCSGC 1 cut(s) 136
TfiI GAWTC 1 cut(s) 395
Tru1I TTAA 1 cut(s) 285
Tru9I TTAA 1 cut(s) 285
TscAI CASTG 1 cut(s) 143
TseFI GTSAC 1 cut(s) 334
Tsp45I GTSAC 1 cut(s) 334
TspDTI ATGAA 1 cut(s) 167
TspGWI ACGGA 1 cut(s) 141
TspRI CASTG 1 cut(s) 143
VpaK11BI GGWCC 2 cut(s) 128, 223
XcmI CCANNNNNNNNNTGG 1 cut(s) 111
XspI CTAG 2 cut(s) 62, 95
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.