Rmu_sc0038108.1_g000001

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0038108.1
OG0000108
Physical Location & Seq
Forward (+)
221 .. 463
243 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0038108.1_g000001.1.cds

Sequence Viewer

Length: 243 bp
atggtttcttacgagtatattctgggtgggttgttagcttcattgctgggctctgttttcttcatgatcatcagtactacactcggcggaaacaaaaaggtcaaggctttaagtgggggagtcaagagtaatgtgtttggagacggtgcgtttctgccggaaatggaagaggagaaaagtaccgacgtcgttattgtcggtgccagagttgctggtgcagctcttgcttacactcttgcctag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

80

Amino Acids

8.25

Weight (kDa)

5.14

Isoelectric Point (pI)

22.45

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 189
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 1 cut(s) 87
AcyI GRCGYC 1 cut(s) 186
AfaI GTAC 2 cut(s) 76, 181
AluBI AGCT 2 cut(s) 38, 221
AluI AGCT 2 cut(s) 38, 221
Alw26I GTCTC 1 cut(s) 135
ApeKI GCWGC 1 cut(s) 218
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 53
BbvI GCAGC 1 cut(s) 230
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 135
BfaI CTAG 1 cut(s) 241
BisI GCNGC 1 cut(s) 219
BlsI GCNGC 1 cut(s) 220
BmcAI AGTACT 1 cut(s) 76
BmiI GGNNCC 1 cut(s) 202
BsaHI GRCGYC 1 cut(s) 186
Bse3DI GCAATG 1 cut(s) 41
BseMI GCAATG 1 cut(s) 41
BseRI GAGGAG 1 cut(s) 185
BseXI GCAGC 1 cut(s) 230
BseYI CCCAGC 1 cut(s) 46
BsgI GTGCAG 1 cut(s) 237
BshNI GGYRCC 1 cut(s) 200
BsiSI CCGG 1 cut(s) 158
BsmAI GTCTC 1 cut(s) 135
BsmBI CGTCTC 1 cut(s) 135
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 1 cut(s) 87
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 202
BspT107I GGYRCC 1 cut(s) 200
BsrDI GCAATG 1 cut(s) 41
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 1 cut(s) 186
Bst4CI ACNGT 1 cut(s) 146
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 186
BstAPI GCANNNNNTGC 1 cut(s) 224
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 135
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 3 cut(s) 209, 218, 224
BstV1I GCAGC 1 cut(s) 230
CciI TCATGA 1 cut(s) 63
Csp6I GTAC 2 cut(s) 75, 180
CviAII CATG 1 cut(s) 64
CviJI RGCY 4 cut(s) 38, 51, 107, 221
CviKI_1 RGCY 4 cut(s) 38, 51, 107, 221
CviQI GTAC 2 cut(s) 75, 180
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 102
Eco24I GRGCYC 1 cut(s) 53
EcoT38I GRGCYC 1 cut(s) 53
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 1 cut(s) 67
FaiI YATR 2 cut(s) 18, 65
FatI CATG 1 cut(s) 63
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 1 cut(s) 219
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 1 cut(s) 219
FspBI CTAG 1 cut(s) 241
GluI GCNGC 1 cut(s) 219
GsaI CCCAGC 1 cut(s) 50
HapII CCGG 1 cut(s) 158
Hin1I GRCGYC 1 cut(s) 186
Hin1II CATG 1 cut(s) 67
HinfI GANTC 1 cut(s) 120
HpaII CCGG 1 cut(s) 158
Hpy188III TCNNGA 2 cut(s) 64, 124
Hpy99I CGWCG 2 cut(s) 188, 191
HpyCH4III ACNGT 1 cut(s) 146
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 1 cut(s) 218
HpyF10VI GCNNNNNNNGC 3 cut(s) 209, 218, 224
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 1 cut(s) 186
Hsp92II CATG 1 cut(s) 67
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 1 cut(s) 66
LpnPI CCDG 5 cut(s) 8, 32, 171, 198, 217
Lsp1109I GCAGC 1 cut(s) 230
MaeI CTAG 1 cut(s) 241
MaeII ACGT 1 cut(s) 186
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 52, 179
MhlI GDGCHC 1 cut(s) 53
MlyI GAGTC 1 cut(s) 129
MnlI CCTC 1 cut(s) 163
MseI TTAA 1 cut(s) 110
MspI CCGG 1 cut(s) 158
MwoI GCNNNNNNNGC 3 cut(s) 209, 218, 224
NdeII GATC 1 cut(s) 66
NlaIII CATG 1 cut(s) 67
NlaIV GGNNCC 1 cut(s) 202
NmeAIII GCCGAG 1 cut(s) 63
PagI TCATGA 1 cut(s) 63
PkrI GCNGC 1 cut(s) 220
PleI GAGTC 1 cut(s) 128
PpsI GAGTC 1 cut(s) 128
PspFI CCCAGC 1 cut(s) 46
PspN4I GGNNCC 1 cut(s) 202
RsaI GTAC 2 cut(s) 76, 181
RsaNI GTAC 2 cut(s) 75, 180
SaqAI TTAA 1 cut(s) 110
SatI GCNGC 1 cut(s) 219
Sau3AI GATC 1 cut(s) 66
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 129
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 40, 102, 189, 223
SsiI CCGC 1 cut(s) 87
SspMI CTAG 1 cut(s) 241
TaaI ACNGT 1 cut(s) 146
TaiI ACGT 1 cut(s) 189
TatI WGTACW 1 cut(s) 74
Tru1I TTAA 1 cut(s) 110
Tru9I TTAA 1 cut(s) 110
TseI GCWGC 1 cut(s) 218
TspDTI ATGAA 2 cut(s) 30, 52
XspI CTAG 1 cut(s) 241
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.