Rh4DG219300

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4D
OG0000108
Physical Location & Seq
Forward (+)
42023169 .. 42026175
3007 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4DG219300.1

Sequence Viewer

Length: 1587 bp
ATGGTGTCTTATGAGTATATTCTGGGTGTGTTGTTAGCTTCTTTGCTGGGCTCTGTTTTTTTCATGATCATCAGTACTACCCTTGGTGGAAACAAAAAGTTCAAGGCTTTAAATGGAGGAGTTAAGAGCAATGGGTTTGGAAACAGGGAGTTTCAGCCGGAAATGGAGGAGGAGAAAGGTACTGACGTAGTCATTGTCGGTGCCGGAGTTGCCGGTGCAGCTCTTGCTTACACTCTTGCCGAGGAAGGTCGTTGTGTGCATGTTATCGAAAGAGACTTGACCAAGCCAGACAGAATTGTTGGTGAGCTGTTGCAGCCTGGGGACTGTGCAAATGAGTCAATTGATGCTCAGAAGGTGTTTGGTTATGCTCTTTACAAAGAAGGCAAGGATACAAAACTGACTTATCCCTTAGAGAAATACAGTTCAGATGTGGCTGGGAGAAGTTTCTACAATGGGCGTTTTATCCAAAGAATGCGTGAAAAAACCATGACTCTTTCAAATGTAAAATTGGAACAAGGATCAGTGACAACACTAATCGAGGAAAAGGGCATTGTTAAAGGGGTGATTTACAAGAACAAGGCTGGAGAGGAGATGAGATCATATGCTCCGCTAACAATCATGTGTGATGGCTGCTTTTCAAATCTGCGCAAGTCTCTCAGTGCACCAAAGGTTGAAAGTCCCTCATGTTTTGTTGGTTTGATCTTGGAGAACTGTGAACTTCCACATGCAAATCATGGACATGTGATTTTGGGAGACCCTTCACCCATCCTGTTTTATCCTATCAGTAGCGCCGAGGTTCGTTGTTTGGTGGATGTACCCGGAACAAAAGTACCTTCAGTAGCTAGTGGTGAAATGGCTAACTATTTGAAAACTGTGGTGGCTCCTCAGATTCCCCCACAGCTGCACAGTGTTTTTATGGCCGCAGTAGAGAAGGGAAACATCAGAACAATGCAAAACAAATGCATGGTTGCTAATCCTGTTCCCACTCCTGGGGTAATTTTGTTGGGGGATTCATTCAACATGAGGCATCCTTTAACAGGAGGAGGAATGACCGTGGCTCATTCAGACATTGTTCTTCTCCGCGATCTCCTTAGACCCCTACATGATCTCAATAATGCATCTACTTTGTGCAGTTACCTTGAATCATTCTACACATTGCGTAAGCCTGTGTCATCTACCATCAACACATTGGCAGGTGCTTTGTACAAGGTGTTTTGTGCATCACCGGATCCAGCAAGACAGGAAATGCGTGAAGCATGTTTTGGCTATTTGAGCCTTGGAGGTATCTGTTCATATGGGTCTGTATCTCTACTCTCTGGTCTTAACCCTCGTCCACTGCACTTGTTTCTCCATTTCTTTGCTGTTGCCATTTATGGTGTCGGCCGCTTAATGCTTCCCTTCCCATCACCTAAACACATGTGGCTTGGGATTCGATTGATCTTGGTATGGCAAGAAAAATATTTCCACCAATTTCTTGCCAACATTTTTGTTAATTACACATTCCCATGTACACATAACTGGCTCCTTATACAAGTCTTTCTGGTTTTCTATTTCAGAGTGCATCAGGCATCATATTCCCCATTATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

528

Amino Acids

58.24

Weight (kDa)

8.44

Isoelectric Point (pI)

39.38

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DAO PF01266 62 - 92 1.4e-06 FAD dependent oxidoreductase
FAD_binding_3 PF01494 174 - 362 5.7e-07 FAD binding domain
SE PF08491 202 - 472 3.3e-114 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1585
AarI CACCTGC 1 cut(s) 1184
Acc16I TGCGCA 1 cut(s) 647
Acc36I ACCTGC 1 cut(s) 1184
AccB1I GGYRCC 1 cut(s) 200
AccII CGCG 1 cut(s) 1083
AciI CCGC 4 cut(s) 608, 921, 1081, 1384
AclWI GGATC 3 cut(s) 526, 1223, 1236
AcoI YGGCCR 2 cut(s) 918, 1381
AcuI CTGAAG 1 cut(s) 819
AfaI GTAC 6 cut(s) 76, 181, 816, 831, 1205, 1510
AfiI CCNNNNNNNGG 3 cut(s) 989, 990, 1037
AflIII ACRYGT 2 cut(s) 739, 1416
AgsI TTSAA 7 cut(s) 103, 498, 639, 674, 868, 1018, 1142
AjnI CCWGG 2 cut(s) 316, 988
AjuI GAANNNNNNNTTGG 2 cut(s) 1245, 1277
AluBI AGCT 5 cut(s) 38, 221, 307, 842, 901
AluI AGCT 5 cut(s) 38, 221, 307, 842, 901
Alw21I GWGCWC 1 cut(s) 664
Alw26I GTCTC 3 cut(s) 267, 657, 747
Alw44I GTGCAC 1 cut(s) 660
AlwI GGATC 3 cut(s) 526, 1223, 1236
AoxI GGCC 2 cut(s) 918, 1381
ApaLI GTGCAC 1 cut(s) 660
ApeKI GCWGC 4 cut(s) 218, 313, 630, 901
AspLEI GCGC 2 cut(s) 648, 791
AsuC2I CCSGG 1 cut(s) 819
AsuHPI GGTGA 6 cut(s) 314, 574, 753, 860, 1215, 1398
BaeGI GKGCMC 1 cut(s) 664
BaeI ACNNNNGTAYC 4 cut(s) 171, 204, 813, 846
BamHI GGATCC 1 cut(s) 1228
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 664
BbvI GCAGC 4 cut(s) 230, 325, 617, 888
BccI CCATC 4 cut(s) 620, 773, 1187, 1411
BciT130I CCWGG 2 cut(s) 318, 990
BciVI GTATCC 1 cut(s) 382
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 819
BcoDI GTCTC 3 cut(s) 267, 657, 747
BfaI CTAG 1 cut(s) 843
BfoI RGCGCY 1 cut(s) 792
BfuAI ACCTGC 1 cut(s) 1184
BfuI GTATCC 1 cut(s) 382
BisI GCNGC 6 cut(s) 219, 314, 631, 902, 921, 1384
BlsI GCNGC 6 cut(s) 220, 315, 632, 903, 922, 1385
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 3 cut(s) 318, 819, 990
BmiI GGNNCC 4 cut(s) 202, 882, 1230, 1523
BmrFI CCNGG 3 cut(s) 318, 819, 990
BmsI GCATC 6 cut(s) 334, 1036, 1127, 1229, 1570, 1577
BpmI CTGGAG 1 cut(s) 603
BpuMI CCSGG 1 cut(s) 819
BsaI GGTCTC 1 cut(s) 747
BsaJI CCNNGG 7 cut(s) 82, 240, 317, 792, 989, 1053, 1276
BsaWI WCCGGW 1 cut(s) 1225
Bsc4I CCNNNNNNNGG 3 cut(s) 989, 990, 1037
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 1 cut(s) 1523
Bse3DI GCAATG 2 cut(s) 136, 1154
BseBI CCWGG 2 cut(s) 318, 990
BseDI CCNNGG 7 cut(s) 82, 240, 317, 792, 989, 1053, 1276
BseGI GGATG 3 cut(s) 765, 817, 1027
BseLI CCNNNNNNNGG 3 cut(s) 989, 990, 1037
BseMI GCAATG 2 cut(s) 136, 1154
BseMII CTCAG 3 cut(s) 362, 670, 899
BseNI ACTGG 1 cut(s) 1523
BseRI GAGGAG 6 cut(s) 132, 182, 185, 602, 873, 1056
BseSI GKGCMC 1 cut(s) 664
BseX3I CGGCCG 1 cut(s) 1381
BseXI GCAGC 4 cut(s) 230, 325, 617, 888
BseYI CCCAGC 2 cut(s) 46, 434
BsgI GTGCAG 4 cut(s) 237, 887, 1150, 1322
Bsh1236I CGCG 1 cut(s) 1083
Bsh1285I CGRYCG 1 cut(s) 1384
BshFI GGCC 2 cut(s) 920, 1383
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 1 cut(s) 1384
BsiHKAI GWGCWC 1 cut(s) 664
BsiSI CCGG 5 cut(s) 158, 204, 213, 819, 1226
BslFI GGGAC 2 cut(s) 335, 663
BslI CCNNNNNNNGG 3 cut(s) 989, 990, 1037
BsmAI GTCTC 3 cut(s) 267, 657, 747
BsmFI GGGAC 2 cut(s) 335, 663
BsmI GAATGC 1 cut(s) 477
BsnI GGCC 2 cut(s) 920, 1383
Bso31I GGTCTC 1 cut(s) 747
Bsp1286I GDGCHC 2 cut(s) 53, 664
Bsp1407I TGTACA 2 cut(s) 1203, 1508
Bsp143I GATC 8 cut(s) 66, 518, 596, 699, 1084, 1105, 1228, 1437
BspACI CCGC 4 cut(s) 608, 921, 1081, 1384
BspANI GGCC 2 cut(s) 920, 1383
BspCNI CTCAG 3 cut(s) 361, 669, 898
BspFNI CGCG 1 cut(s) 1083
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 4 cut(s) 202, 882, 1230, 1523
BspMI ACCTGC 1 cut(s) 1184
BspPI GGATC 3 cut(s) 526, 1223, 1236
BspT107I GGYRCC 1 cut(s) 200
BspTNI GGTCTC 1 cut(s) 747
BsrDI GCAATG 2 cut(s) 136, 1154
BsrFI RCCGGY 1 cut(s) 212
BsrGI TGTACA 2 cut(s) 1203, 1508
BsrI ACTGG 1 cut(s) 1523
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 7 cut(s) 82, 240, 317, 792, 989, 1053, 1276
BssMI GATC 8 cut(s) 66, 518, 596, 699, 1084, 1105, 1228, 1437
BssT1I CCWWGG 2 cut(s) 82, 1276
Bst2UI CCWGG 2 cut(s) 318, 990
Bst4CI ACNGT 6 cut(s) 326, 422, 713, 874, 908, 1054
BstAPI GCANNNNNTGC 1 cut(s) 224
BstAUI TGTACA 2 cut(s) 1203, 1508
BstDEI CTNAG 5 cut(s) 348, 409, 656, 885, 1091
BstDSI CCRYGG 1 cut(s) 1053
BstENI CCTNNNNNAGG 1 cut(s) 1035
BstF5I GGATG 3 cut(s) 765, 817, 1027
BstFNI CGCG 1 cut(s) 1083
BstH2I RGCGCY 1 cut(s) 792
BstHHI GCGC 2 cut(s) 648, 791
BstKTI GATC 8 cut(s) 69, 521, 599, 702, 1087, 1108, 1231, 1440
BstMAI GTCTC 3 cut(s) 267, 657, 747
BstMBI GATC 8 cut(s) 66, 518, 596, 699, 1084, 1105, 1228, 1437
BstMCI CGRYCG 1 cut(s) 1384
BstMWI GCNNNNNNNGC 5 cut(s) 209, 218, 224, 313, 1272
BstNI CCWGG 2 cut(s) 318, 990
BstNSI RCATGY 5 cut(s) 263, 728, 743, 1260, 1420
BstSCI CCNGG 3 cut(s) 316, 817, 988
BstSLI GKGCMC 1 cut(s) 664
BstUI CGCG 1 cut(s) 1083
BstV1I GCAGC 4 cut(s) 230, 325, 617, 888
BstX2I RGATCY 1 cut(s) 1228
BstYI RGATCY 1 cut(s) 1228
BstZI CGGCCG 1 cut(s) 1381
BsuI GTATCC 1 cut(s) 382
BsuRI GGCC 2 cut(s) 920, 1383
BtgI CCRYGG 1 cut(s) 1053
BtsCI GGATG 3 cut(s) 765, 817, 1027
BtsI GCAGTG 1 cut(s) 1334
BtsIMutI CAGTG 4 cut(s) 528, 664, 913, 1334
BveI ACCTGC 1 cut(s) 1184
CciI TCATGA 1 cut(s) 63
CfoI GCGC 2 cut(s) 648, 791
Cfr10I RCCGGY 1 cut(s) 212
Csp6I GTAC 6 cut(s) 75, 180, 815, 830, 1204, 1509
CspCI CAANNNNNGTGG 2 cut(s) 1323, 1358
CviQI GTAC 6 cut(s) 75, 180, 815, 830, 1204, 1509
DdeI CTNAG 5 cut(s) 348, 409, 656, 885, 1091
DpnI GATC 8 cut(s) 68, 520, 598, 701, 1086, 1107, 1230, 1439
DpnII GATC 8 cut(s) 66, 518, 596, 699, 1084, 1105, 1228, 1437
DraI TTTAAA 1 cut(s) 111
EaeI YGGCCR 2 cut(s) 918, 1381
EagI CGGCCG 1 cut(s) 1381
EclXI CGGCCG 1 cut(s) 1381
Eco130I CCWWGG 2 cut(s) 82, 1276
Eco24I GRGCYC 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 747
Eco52I CGGCCG 1 cut(s) 1381
Eco57I CTGAAG 1 cut(s) 819
EcoNI CCTNNNNNAGG 1 cut(s) 1035
EcoRII CCWGG 2 cut(s) 316, 988
EcoT14I CCWWGG 2 cut(s) 82, 1276
EcoT22I ATGCAT 2 cut(s) 965, 1120
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 82, 1276
FaqI GGGAC 2 cut(s) 335, 663
FauNDI CATATG 2 cut(s) 601, 1294
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 6 cut(s) 219, 314, 631, 902, 921, 1384
FokI GGATG 3 cut(s) 752, 824, 1014
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 6 cut(s) 219, 314, 631, 902, 921, 1384
FspBI CTAG 1 cut(s) 843
FspI TGCGCA 1 cut(s) 647
GlaI GCGC 2 cut(s) 647, 790
GluI GCNGC 6 cut(s) 219, 314, 631, 902, 921, 1384
GsaI CCCAGC 2 cut(s) 50, 438
GsuI CTGGAG 1 cut(s) 603
HaeII RGCGCY 1 cut(s) 792
HaeIII GGCC 2 cut(s) 920, 1383
HapII CCGG 5 cut(s) 158, 204, 213, 819, 1226
HhaI GCGC 2 cut(s) 648, 791
Hin6I GCGC 2 cut(s) 646, 789
HinP1I GCGC 2 cut(s) 646, 789
HinfI GANTC 6 cut(s) 335, 490, 889, 1010, 1142, 1429
HpaII CCGG 5 cut(s) 158, 204, 213, 819, 1226
HphI GGTGA 6 cut(s) 314, 574, 753, 860, 1215, 1398
Hpy166II GTNNAC 4 cut(s) 662, 716, 1334, 1511
Hpy188I TCNGA 6 cut(s) 351, 427, 888, 944, 1066, 1556
Hpy188III TCNNGA 1 cut(s) 64
Hpy8I GTNNAC 4 cut(s) 662, 716, 1334, 1511
HpyAV CCTTC 7 cut(s) 239, 346, 374, 768, 843, 925, 1408
HpyCH4III ACNGT 6 cut(s) 326, 422, 713, 874, 908, 1054
HpyCH4IV ACGT 1 cut(s) 186
HpyF10VI GCNNNNNNNGC 5 cut(s) 209, 218, 224, 313, 1272
HpyF3I CTNAG 5 cut(s) 348, 409, 656, 885, 1091
HpySE526I ACGT 1 cut(s) 186
HspAI GCGC 2 cut(s) 646, 789
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 8 cut(s) 66, 518, 596, 699, 1084, 1105, 1228, 1437
LmnI GCTCC 3 cut(s) 610, 886, 1527
Lsp1109I GCAGC 4 cut(s) 230, 325, 617, 888
LweI GCATC 6 cut(s) 334, 1036, 1127, 1229, 1570, 1577
MaeI CTAG 1 cut(s) 843
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 2 cut(s) 523, 1133
MalI GATC 8 cut(s) 68, 520, 598, 701, 1086, 1107, 1230, 1439
MboI GATC 8 cut(s) 66, 518, 596, 699, 1084, 1105, 1228, 1437
MboII GAAGA 1 cut(s) 1067
MfeI CAATTG 1 cut(s) 339
MflI RGATCY 1 cut(s) 1228
MhlI GDGCHC 2 cut(s) 53, 664
MluCI AATT 6 cut(s) 294, 339, 506, 996, 1469, 1492
MlyI GAGTC 2 cut(s) 344, 484
Mph1103I ATGCAT 2 cut(s) 965, 1120
MseI TTAA 7 cut(s) 110, 123, 555, 1034, 1323, 1388, 1491
MslI CAYNNNNRTG 2 cut(s) 738, 1504
MspA1I CMGCKG 1 cut(s) 901
MspI CCGG 5 cut(s) 158, 204, 213, 819, 1226
MspR9I CCNGG 3 cut(s) 318, 819, 990
MunI CAATTG 1 cut(s) 339
Mva1269I GAATGC 1 cut(s) 477
MvaI CCWGG 2 cut(s) 318, 990
MvnI CGCG 1 cut(s) 1083
MwoI GCNNNNNNNGC 5 cut(s) 209, 218, 224, 313, 1272
NciI CCSGG 1 cut(s) 819
NdeI CATATG 2 cut(s) 601, 1294
NdeII GATC 8 cut(s) 66, 518, 596, 699, 1084, 1105, 1228, 1437
NlaIV GGNNCC 4 cut(s) 202, 882, 1230, 1523
NmeAIII GCCGAG 2 cut(s) 265, 817
NmuCI GTSAC 1 cut(s) 523
NsbI TGCGCA 1 cut(s) 647
NsiI ATGCAT 2 cut(s) 965, 1120
NspI RCATGY 5 cut(s) 263, 728, 743, 1260, 1420
PagI TCATGA 1 cut(s) 63
PaqCI CACCTGC 1 cut(s) 1184
PciI ACATGT 2 cut(s) 739, 1416
PctI GAATGC 1 cut(s) 477
PfeI GAWTC 4 cut(s) 889, 1010, 1142, 1429
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 6 cut(s) 220, 315, 632, 903, 922, 1385
PleI GAGTC 2 cut(s) 343, 484
PpsI GAGTC 2 cut(s) 343, 484
PscI ACATGT 2 cut(s) 739, 1416
PsiI TTATAA 1 cut(s) 1585
Psp6I CCWGG 2 cut(s) 316, 988
PspFI CCCAGC 2 cut(s) 46, 434
PspGI CCWGG 2 cut(s) 316, 988
PspN4I GGNNCC 4 cut(s) 202, 882, 1230, 1523
PsuI RGATCY 1 cut(s) 1228
PsyI GACNNNGTC 1 cut(s) 188
PvuII CAGCTG 1 cut(s) 901
RsaI GTAC 6 cut(s) 76, 181, 816, 831, 1205, 1510
RsaNI GTAC 6 cut(s) 75, 180, 815, 830, 1204, 1509
RseI CAYNNNNRTG 2 cut(s) 738, 1504
SaqAI TTAA 7 cut(s) 110, 123, 555, 1034, 1323, 1388, 1491
SatI GCNGC 6 cut(s) 219, 314, 631, 902, 921, 1384
Sau3AI GATC 8 cut(s) 66, 518, 596, 699, 1084, 1105, 1228, 1437
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 2 cut(s) 344, 484
ScrFI CCNGG 3 cut(s) 318, 819, 990
SduI GDGCHC 2 cut(s) 53, 664
SfaNI GCATC 6 cut(s) 334, 1036, 1127, 1229, 1570, 1577
SmiMI CAYNNNNRTG 2 cut(s) 738, 1504
Sse9I AATT 6 cut(s) 294, 339, 506, 996, 1469, 1492
SsiI CCGC 4 cut(s) 608, 921, 1081, 1384
SspI AATATT 1 cut(s) 1460
SspMI CTAG 1 cut(s) 843
StyD4I CCNGG 3 cut(s) 316, 817, 988
StyI CCWWGG 2 cut(s) 82, 1276
TaaI ACNGT 6 cut(s) 326, 422, 713, 874, 908, 1054
TaiI ACGT 1 cut(s) 189
TaqI TCGA 3 cut(s) 267, 537, 1432
TasI AATT 6 cut(s) 294, 339, 506, 996, 1469, 1492
TatI WGTACW 3 cut(s) 74, 1203, 1508
TauI GCSGC 2 cut(s) 923, 1386
TfiI GAWTC 4 cut(s) 889, 1010, 1142, 1429
Tru1I TTAA 7 cut(s) 110, 123, 555, 1034, 1323, 1388, 1491
Tru9I TTAA 7 cut(s) 110, 123, 555, 1034, 1323, 1388, 1491
TscAI CASTG 4 cut(s) 528, 664, 913, 1341
TseFI GTSAC 1 cut(s) 523
TseI GCWGC 4 cut(s) 218, 313, 630, 901
Tsp45I GTSAC 1 cut(s) 523
TspDTI ATGAA 3 cut(s) 52, 1002, 1281
TspRI CASTG 4 cut(s) 528, 664, 913, 1341
Tth111I GACNNNGTC 1 cut(s) 188
VneI GTGCAC 1 cut(s) 660
XagI CCTNNNNNAGG 1 cut(s) 1035
XceI RCATGY 5 cut(s) 263, 728, 743, 1260, 1420
XcmI CCANNNNNNNNNTGG 1 cut(s) 1186
XspI CTAG 1 cut(s) 843
ZrmI AGTACT 1 cut(s) 76
Zsp2I ATGCAT 2 cut(s) 965, 1120
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.