squalene
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 160 |
| AarI | CACCTGC | 1 cut(s) | 914 |
| Acc16I | TGCGCA | 2 cut(s) | 432, 945 |
| Acc36I | ACCTGC | 1 cut(s) | 914 |
| AccII | CGCG | 1 cut(s) | 868 |
| AciI | CCGC | 3 cut(s) | 706, 866, 882 |
| AclWI | GGATC | 1 cut(s) | 311 |
| AcoI | YGGCCR | 1 cut(s) | 703 |
| AcuI | CTGAAG | 1 cut(s) | 604 |
| AfaI | GTAC | 3 cut(s) | 10, 601, 616 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 774, 822 |
| AflII | CTTAAG | 1 cut(s) | 81 |
| AflIII | ACRYGT | 2 cut(s) | 11, 524 |
| AgsI | TTSAA | 6 cut(s) | 283, 424, 459, 653, 803, 927 |
| AjnI | CCWGG | 3 cut(s) | 68, 602, 773 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 374, 406 |
| AluBI | AGCT | 4 cut(s) | 59, 270, 627, 686 |
| AluI | AGCT | 4 cut(s) | 59, 270, 627, 686 |
| Alw21I | GWGCWC | 1 cut(s) | 449 |
| Alw26I | GTCTC | 4 cut(s) | 19, 105, 442, 532 |
| Alw44I | GTGCAC | 1 cut(s) | 445 |
| AlwI | GGATC | 1 cut(s) | 311 |
| AoxI | GGCC | 1 cut(s) | 703 |
| ApaLI | GTGCAC | 1 cut(s) | 445 |
| ApeKI | GCWGC | 3 cut(s) | 65, 686, 753 |
| AspLEI | GCGC | 2 cut(s) | 433, 946 |
| AsuHPI | GGTGA | 4 cut(s) | 66, 359, 538, 645 |
| BaeGI | GKGCMC | 1 cut(s) | 449 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 598, 631 |
| Bbv12I | GWGCWC | 1 cut(s) | 449 |
| BbvI | GCAGC | 3 cut(s) | 77, 673, 740 |
| BccI | CCATC | 3 cut(s) | 159, 405, 558 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 93, 127 |
| BciT130I | CCWGG | 3 cut(s) | 70, 604, 775 |
| BciVI | GTATCC | 1 cut(s) | 167 |
| BcoDI | GTCTC | 4 cut(s) | 19, 105, 442, 532 |
| BfaI | CTAG | 1 cut(s) | 628 |
| BfrI | CTTAAG | 1 cut(s) | 81 |
| BfuAI | ACCTGC | 1 cut(s) | 914 |
| BfuI | GTATCC | 1 cut(s) | 167 |
| BisI | GCNGC | 4 cut(s) | 66, 687, 706, 754 |
| BlsI | GCNGC | 4 cut(s) | 67, 688, 707, 755 |
| Bme1390I | CCNGG | 3 cut(s) | 70, 604, 775 |
| BmiI | GGNNCC | 1 cut(s) | 667 |
| BmrFI | CCNGG | 3 cut(s) | 70, 604, 775 |
| BmsI | GCATC | 4 cut(s) | 119, 785, 821, 890 |
| BpmI | CTGGAG | 1 cut(s) | 388 |
| BsaI | GGTCTC | 2 cut(s) | 105, 532 |
| BsaJI | CCNNGG | 4 cut(s) | 69, 193, 577, 658 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 374, 404 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 774, 822 |
| BseBI | CCWGG | 3 cut(s) | 70, 604, 775 |
| BseDI | CCNNGG | 4 cut(s) | 69, 193, 577, 658 |
| BseGI | GGATG | 5 cut(s) | 247, 550, 602, 800, 812 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 774, 822 |
| BseMII | CTCAG | 4 cut(s) | 25, 147, 455, 684 |
| BseRI | GAGGAG | 4 cut(s) | 382, 387, 658, 841 |
| BseSI | GKGCMC | 1 cut(s) | 449 |
| BseXI | GCAGC | 3 cut(s) | 77, 673, 740 |
| BsgI | GTGCAG | 1 cut(s) | 672 |
| Bsh1236I | CGCG | 1 cut(s) | 868 |
| BshFI | GGCC | 1 cut(s) | 705 |
| BsiHKAI | GWGCWC | 1 cut(s) | 449 |
| BslFI | GGGAC | 1 cut(s) | 448 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 774, 822 |
| BsmAI | GTCTC | 4 cut(s) | 19, 105, 442, 532 |
| BsmFI | GGGAC | 1 cut(s) | 448 |
| BsmI | GAATGC | 2 cut(s) | 262, 798 |
| BsnI | GGCC | 1 cut(s) | 705 |
| Bso31I | GGTCTC | 2 cut(s) | 105, 532 |
| Bsp1286I | GDGCHC | 1 cut(s) | 449 |
| Bsp1407I | TGTACA | 1 cut(s) | 8 |
| Bsp143I | GATC | 3 cut(s) | 303, 869, 890 |
| BspACI | CCGC | 3 cut(s) | 706, 866, 882 |
| BspANI | GGCC | 1 cut(s) | 705 |
| BspCNI | CTCAG | 4 cut(s) | 26, 146, 454, 683 |
| BspFNI | CGCG | 1 cut(s) | 868 |
| BspLI | GGNNCC | 1 cut(s) | 667 |
| BspMI | ACCTGC | 1 cut(s) | 914 |
| BspPI | GGATC | 1 cut(s) | 311 |
| BspTI | CTTAAG | 1 cut(s) | 81 |
| BspTNI | GGTCTC | 2 cut(s) | 105, 532 |
| BsrGI | TGTACA | 1 cut(s) | 8 |
| BssECI | CCNNGG | 4 cut(s) | 69, 193, 577, 658 |
| BssMI | GATC | 3 cut(s) | 303, 869, 890 |
| BssT1I | CCWWGG | 1 cut(s) | 193 |
| Bst2UI | CCWGG | 3 cut(s) | 70, 604, 775 |
| Bst4CI | ACNGT | 4 cut(s) | 207, 498, 659, 839 |
| BstAFI | CTTAAG | 1 cut(s) | 81 |
| BstAUI | TGTACA | 1 cut(s) | 8 |
| BstDEI | CTNAG | 5 cut(s) | 34, 133, 441, 670, 876 |
| BstDSI | CCRYGG | 1 cut(s) | 658 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 820 |
| BstF5I | GGATG | 5 cut(s) | 247, 550, 602, 800, 812 |
| BstFNI | CGCG | 1 cut(s) | 868 |
| BstHHI | GCGC | 2 cut(s) | 433, 946 |
| BstKTI | GATC | 3 cut(s) | 306, 872, 893 |
| BstMAI | GTCTC | 4 cut(s) | 19, 105, 442, 532 |
| BstMBI | GATC | 3 cut(s) | 303, 869, 890 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 65, 702 |
| BstNI | CCWGG | 3 cut(s) | 70, 604, 775 |
| BstNSI | RCATGY | 2 cut(s) | 15, 528 |
| BstSCI | CCNGG | 3 cut(s) | 68, 602, 773 |
| BstSLI | GKGCMC | 1 cut(s) | 449 |
| BstUI | CGCG | 1 cut(s) | 868 |
| BstV1I | GCAGC | 3 cut(s) | 77, 673, 740 |
| BsuI | GTATCC | 1 cut(s) | 167 |
| BsuRI | GGCC | 1 cut(s) | 705 |
| BtgI | CCRYGG | 1 cut(s) | 658 |
| BtsCI | GGATG | 5 cut(s) | 247, 550, 602, 800, 812 |
| BtsI | GCAGTG | 1 cut(s) | 939 |
| BtsIMutI | CAGTG | 3 cut(s) | 313, 449, 939 |
| BveI | ACCTGC | 1 cut(s) | 914 |
| CfoI | GCGC | 2 cut(s) | 433, 946 |
| Csp6I | GTAC | 3 cut(s) | 9, 600, 615 |
| CviAII | CATG | 5 cut(s) | 12, 519, 525, 749, 806 |
| CviQI | GTAC | 3 cut(s) | 9, 600, 615 |
| DdeI | CTNAG | 5 cut(s) | 34, 133, 441, 670, 876 |
| DpnI | GATC | 3 cut(s) | 305, 871, 892 |
| DpnII | GATC | 3 cut(s) | 303, 869, 890 |
| EaeI | YGGCCR | 1 cut(s) | 703 |
| Eco130I | CCWWGG | 1 cut(s) | 193 |
| Eco31I | GGTCTC | 2 cut(s) | 105, 532 |
| Eco57I | CTGAAG | 1 cut(s) | 604 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 820 |
| EcoRII | CCWGG | 3 cut(s) | 68, 602, 773 |
| EcoT14I | CCWWGG | 1 cut(s) | 193 |
| EcoT22I | ATGCAT | 1 cut(s) | 800 |
| ErhI | CCWWGG | 1 cut(s) | 193 |
| FaeI | CATG | 5 cut(s) | 15, 522, 528, 752, 809 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 452, 484 |
| FaqI | GGGAC | 1 cut(s) | 448 |
| FatI | CATG | 5 cut(s) | 11, 518, 524, 748, 805 |
| FauNDI | CATATG | 1 cut(s) | 386 |
| Fnu4HI | GCNGC | 4 cut(s) | 66, 687, 706, 754 |
| FokI | GGATG | 5 cut(s) | 234, 537, 609, 799, 807 |
| Fsp4HI | GCNGC | 4 cut(s) | 66, 687, 706, 754 |
| FspBI | CTAG | 1 cut(s) | 628 |
| FspI | TGCGCA | 2 cut(s) | 432, 945 |
| GlaI | GCGC | 2 cut(s) | 432, 945 |
| GluI | GCNGC | 4 cut(s) | 66, 687, 706, 754 |
| GsuI | CTGGAG | 1 cut(s) | 388 |
| HaeIII | GGCC | 1 cut(s) | 705 |
| HhaI | GCGC | 2 cut(s) | 433, 946 |
| Hin1II | CATG | 5 cut(s) | 15, 522, 528, 752, 809 |
| Hin6I | GCGC | 2 cut(s) | 431, 944 |
| HinP1I | GCGC | 2 cut(s) | 431, 944 |
| HinfI | GANTC | 5 cut(s) | 120, 275, 530, 674, 927 |
| HphI | GGTGA | 4 cut(s) | 66, 359, 538, 645 |
| Hpy166II | GTNNAC | 2 cut(s) | 9, 447 |
| Hpy188I | TCNGA | 5 cut(s) | 136, 212, 673, 729, 851 |
| Hpy188III | TCNNGA | 1 cut(s) | 102 |
| Hpy8I | GTNNAC | 2 cut(s) | 9, 447 |
| Hpy99I | CGWCG | 2 cut(s) | 7, 108 |
| HpyAV | CCTTC | 5 cut(s) | 131, 513, 553, 628, 710 |
| HpyCH4III | ACNGT | 4 cut(s) | 207, 498, 659, 839 |
| HpyCH4V | TGCA | 9 cut(s) | 65, 114, 447, 689, 737, 780, 798, 903, 916 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 65, 702 |
| HpyF3I | CTNAG | 5 cut(s) | 34, 133, 441, 670, 876 |
| Hsp92II | CATG | 5 cut(s) | 15, 522, 528, 752, 809 |
| HspAI | GCGC | 2 cut(s) | 431, 944 |
| Kzo9I | GATC | 3 cut(s) | 303, 869, 890 |
| LmnI | GCTCC | 2 cut(s) | 395, 671 |
| Lsp1109I | GCAGC | 3 cut(s) | 77, 673, 740 |
| LweI | GCATC | 4 cut(s) | 119, 785, 821, 890 |
| MaeI | CTAG | 1 cut(s) | 628 |
| MaeIII | GTNAC | 3 cut(s) | 308, 498, 950 |
| MalI | GATC | 3 cut(s) | 305, 871, 892 |
| MboI | GATC | 3 cut(s) | 303, 869, 890 |
| MboII | GAAGA | 4 cut(s) | 235, 852, 864, 955 |
| MfeI | CAATTG | 1 cut(s) | 124 |
| MhlI | GDGCHC | 1 cut(s) | 449 |
| MluCI | AATT | 5 cut(s) | 46, 124, 291, 781, 917 |
| MlyI | GAGTC | 2 cut(s) | 129, 269 |
| Mph1103I | ATGCAT | 1 cut(s) | 800 |
| MseI | TTAA | 3 cut(s) | 82, 483, 819 |
| MslI | CAYNNNNRTG | 1 cut(s) | 523 |
| MspA1I | CMGCKG | 2 cut(s) | 686, 884 |
| MspCI | CTTAAG | 1 cut(s) | 81 |
| MspR9I | CCNGG | 3 cut(s) | 70, 604, 775 |
| MunI | CAATTG | 1 cut(s) | 124 |
| Mva1269I | GAATGC | 2 cut(s) | 262, 798 |
| MvaI | CCWGG | 3 cut(s) | 70, 604, 775 |
| MvnI | CGCG | 1 cut(s) | 868 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 65, 702 |
| NdeI | CATATG | 1 cut(s) | 386 |
| NdeII | GATC | 3 cut(s) | 303, 869, 890 |
| NlaIII | CATG | 5 cut(s) | 15, 522, 528, 752, 809 |
| NlaIV | GGNNCC | 1 cut(s) | 667 |
| NmuCI | GTSAC | 2 cut(s) | 308, 498 |
| NsbI | TGCGCA | 2 cut(s) | 432, 945 |
| NsiI | ATGCAT | 1 cut(s) | 800 |
| NspI | RCATGY | 2 cut(s) | 15, 528 |
| PaqCI | CACCTGC | 1 cut(s) | 914 |
| PciI | ACATGT | 2 cut(s) | 11, 524 |
| PctI | GAATGC | 2 cut(s) | 262, 798 |
| PfeI | GAWTC | 3 cut(s) | 530, 674, 927 |
| PkrI | GCNGC | 4 cut(s) | 67, 688, 707, 755 |
| PleI | GAGTC | 2 cut(s) | 128, 269 |
| PpsI | GAGTC | 2 cut(s) | 128, 269 |
| PscI | ACATGT | 2 cut(s) | 11, 524 |
| PsiI | TTATAA | 1 cut(s) | 160 |
| Psp6I | CCWGG | 3 cut(s) | 68, 602, 773 |
| PspGI | CCWGG | 3 cut(s) | 68, 602, 773 |
| PspN4I | GGNNCC | 1 cut(s) | 667 |
| PvuII | CAGCTG | 1 cut(s) | 686 |
| RsaI | GTAC | 3 cut(s) | 10, 601, 616 |
| RsaNI | GTAC | 3 cut(s) | 9, 600, 615 |
| RseI | CAYNNNNRTG | 1 cut(s) | 523 |
| SaqAI | TTAA | 3 cut(s) | 82, 483, 819 |
| SatI | GCNGC | 4 cut(s) | 66, 687, 706, 754 |
| Sau3AI | GATC | 3 cut(s) | 303, 869, 890 |
| SchI | GAGTC | 2 cut(s) | 129, 269 |
| ScrFI | CCNGG | 3 cut(s) | 70, 604, 775 |
| SduI | GDGCHC | 1 cut(s) | 449 |
| SfaNI | GCATC | 4 cut(s) | 119, 785, 821, 890 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 523 |
| SmlI | CTYRAG | 1 cut(s) | 81 |
| SmoI | CTYRAG | 1 cut(s) | 81 |
| Sse9I | AATT | 5 cut(s) | 46, 124, 291, 781, 917 |
| SsiI | CCGC | 3 cut(s) | 706, 866, 882 |
| SspMI | CTAG | 1 cut(s) | 628 |
| StyD4I | CCNGG | 3 cut(s) | 68, 602, 773 |
| StyI | CCWWGG | 1 cut(s) | 193 |
| TaaI | ACNGT | 4 cut(s) | 207, 498, 659, 839 |
| TaqI | TCGA | 3 cut(s) | 19, 103, 322 |
| TasI | AATT | 5 cut(s) | 46, 124, 291, 781, 917 |
| TatI | WGTACW | 1 cut(s) | 8 |
| TauI | GCSGC | 1 cut(s) | 708 |
| TfiI | GAWTC | 3 cut(s) | 530, 674, 927 |
| Tru1I | TTAA | 3 cut(s) | 82, 483, 819 |
| Tru9I | TTAA | 3 cut(s) | 82, 483, 819 |
| TscAI | CASTG | 3 cut(s) | 313, 449, 946 |
| TseFI | GTSAC | 2 cut(s) | 308, 498 |
| TseI | GCWGC | 3 cut(s) | 65, 686, 753 |
| Tsp45I | GTSAC | 2 cut(s) | 308, 498 |
| TspDTI | ATGAA | 1 cut(s) | 236 |
| TspRI | CASTG | 3 cut(s) | 313, 449, 946 |
| Vha464I | CTTAAG | 1 cut(s) | 81 |
| VneI | GTGCAC | 1 cut(s) | 445 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 820 |
| XceI | RCATGY | 2 cut(s) | 15, 528 |
| XspI | CTAG | 1 cut(s) | 628 |
| Zsp2I | ATGCAT | 1 cut(s) | 800 |