Rmu_co8129060.1_g000001

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8129060.1
OG0000108
Physical Location & Seq
Reverse (-)
1 .. 471
471 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8129060.1_g000001.1.cds

Sequence Viewer

Length: 312 bp
atggccaactatttgaagactgtggtggctcctcaggttcccccacagctgtacaatgcttttatggttgcaatagagaaaggaaacattagatccatgcaaaacaaaagcatggctgctaatcctgttcccactcctggtgcaattttgttgggggattcattcaatatgaggcatcctttaacaggaggagggatgaccgtggctctttcagacatagttcttctccgcgatcttcttagacccctacgtgatctcaatgatgcacctgctttgtgcaattaccttgaatcattttatacattgcgtaag
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

104

Amino Acids

11.43

Weight (kDa)

9.3

Isoelectric Point (pI)

57.35

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 277
Acc36I ACCTGC 1 cut(s) 277
AccII CGCG 1 cut(s) 231
AciI CCGC 1 cut(s) 229
AclWI GGATC 1 cut(s) 87
AcoI YGGCCR 1 cut(s) 3
AfaI GTAC 1 cut(s) 53
AfiI CCNNNNNNNGG 2 cut(s) 137, 185
AgsI TTSAA 3 cut(s) 16, 166, 290
AjnI CCWGG 1 cut(s) 136
AluBI AGCT 1 cut(s) 49
AluI AGCT 1 cut(s) 49
AlwI GGATC 1 cut(s) 87
AoxI GGCC 1 cut(s) 3
ApeKI GCWGC 1 cut(s) 116
AxyI CCTNAGG 1 cut(s) 33
BalI TGGCCA 1 cut(s) 5
BbsI GAAGAC 1 cut(s) 23
BbvI GCAGC 1 cut(s) 103
BciT130I CCWGG 1 cut(s) 138
BfuAI ACCTGC 1 cut(s) 277
BisI GCNGC 1 cut(s) 117
BlsI GCNGC 1 cut(s) 118
Bme1390I CCNGG 1 cut(s) 138
BmiI GGNNCC 2 cut(s) 30, 39
BmrFI CCNGG 1 cut(s) 138
BmsI GCATC 2 cut(s) 184, 253
BpiI GAAGAC 1 cut(s) 23
BsaAI YACGTR 1 cut(s) 251
BsaJI CCNNGG 1 cut(s) 201
Bsc4I CCNNNNNNNGG 2 cut(s) 137, 185
Bse21I CCTNAGG 1 cut(s) 33
Bse3DI GCAATG 1 cut(s) 302
BseBI CCWGG 1 cut(s) 138
BseDI CCNNGG 1 cut(s) 201
BseGI GGATG 2 cut(s) 175, 201
BseLI CCNNNNNNNGG 2 cut(s) 137, 185
BseMI GCAATG 1 cut(s) 302
BseMII CTCAG 1 cut(s) 47
BseRI GAGGAG 2 cut(s) 21, 204
BseXI GCAGC 1 cut(s) 103
Bsh1236I CGCG 1 cut(s) 231
BshFI GGCC 1 cut(s) 5
BslI CCNNNNNNNGG 2 cut(s) 137, 185
BsnI GGCC 1 cut(s) 5
Bsp1407I TGTACA 1 cut(s) 51
Bsp143I GATC 3 cut(s) 92, 232, 253
BspACI CCGC 1 cut(s) 229
BspANI GGCC 1 cut(s) 5
BspCNI CTCAG 1 cut(s) 46
BspFNI CGCG 1 cut(s) 231
BspLI GGNNCC 2 cut(s) 30, 39
BspMI ACCTGC 1 cut(s) 277
BspPI GGATC 1 cut(s) 87
BsrDI GCAATG 1 cut(s) 302
BsrGI TGTACA 1 cut(s) 51
BssECI CCNNGG 1 cut(s) 201
BssMI GATC 3 cut(s) 92, 232, 253
Bst2UI CCWGG 1 cut(s) 138
Bst4CI ACNGT 2 cut(s) 22, 202
BstAUI TGTACA 1 cut(s) 51
BstBAI YACGTR 1 cut(s) 251
BstDEI CTNAG 2 cut(s) 33, 239
BstDSI CCRYGG 1 cut(s) 201
BstENI CCTNNNNNAGG 1 cut(s) 183
BstF5I GGATG 2 cut(s) 175, 201
BstFNI CGCG 1 cut(s) 231
BstKTI GATC 3 cut(s) 95, 235, 256
BstMBI GATC 3 cut(s) 92, 232, 253
BstNI CCWGG 1 cut(s) 138
BstSCI CCNGG 1 cut(s) 136
BstUI CGCG 1 cut(s) 231
BstV1I GCAGC 1 cut(s) 103
BstV2I GAAGAC 1 cut(s) 23
BstX2I RGATCY 1 cut(s) 92
BstYI RGATCY 1 cut(s) 92
Bsu36I CCTNAGG 1 cut(s) 33
BsuRI GGCC 1 cut(s) 5
BtgI CCRYGG 1 cut(s) 201
BtsCI GGATG 2 cut(s) 175, 201
BveI ACCTGC 1 cut(s) 277
Csp6I GTAC 1 cut(s) 52
CviAII CATG 2 cut(s) 97, 112
CviJI RGCY 5 cut(s) 5, 29, 49, 116, 206
CviKI_1 RGCY 5 cut(s) 5, 29, 49, 116, 206
CviQI GTAC 1 cut(s) 52
DdeI CTNAG 2 cut(s) 33, 239
DpnI GATC 3 cut(s) 94, 234, 255
DpnII GATC 3 cut(s) 92, 232, 253
EaeI YGGCCR 1 cut(s) 3
Eco81I CCTNAGG 1 cut(s) 33
EcoNI CCTNNNNNAGG 1 cut(s) 183
EcoRII CCWGG 1 cut(s) 136
FaeI CATG 2 cut(s) 100, 115
FaiI YATR 6 cut(s) 65, 98, 113, 170, 218, 300
FatI CATG 2 cut(s) 96, 111
Fnu4HI GCNGC 1 cut(s) 117
FokI GGATG 2 cut(s) 162, 208
Fsp4HI GCNGC 1 cut(s) 117
GluI GCNGC 1 cut(s) 117
HaeIII GGCC 1 cut(s) 5
Hin1II CATG 2 cut(s) 100, 115
HinfI GANTC 2 cut(s) 158, 290
Hpy188I TCNGA 1 cut(s) 214
HpyCH4III ACNGT 2 cut(s) 22, 202
HpyCH4IV ACGT 1 cut(s) 250
HpyCH4V TGCA 5 cut(s) 71, 100, 143, 266, 279
HpyF3I CTNAG 2 cut(s) 33, 239
HpySE526I ACGT 1 cut(s) 250
Hsp92II CATG 2 cut(s) 100, 115
Kzo9I GATC 3 cut(s) 92, 232, 253
LmnI GCTCC 1 cut(s) 34
LpnPI CCDG 6 cut(s) 20, 123, 138, 150, 171, 282
Lsp1109I GCAGC 1 cut(s) 103
LweI GCATC 2 cut(s) 184, 253
MaeII ACGT 1 cut(s) 250
MalI GATC 3 cut(s) 94, 234, 255
MboI GATC 3 cut(s) 92, 232, 253
MboII GAAGA 3 cut(s) 28, 215, 227
MflI RGATCY 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 5
MluCI AATT 2 cut(s) 144, 280
MluNI TGGCCA 1 cut(s) 5
MnlI CCTC 4 cut(s) 42, 165, 182, 185
Mox20I TGGCCA 1 cut(s) 5
MscI TGGCCA 1 cut(s) 5
MseI TTAA 1 cut(s) 182
Msp20I TGGCCA 1 cut(s) 5
MspA1I CMGCKG 1 cut(s) 49
MspR9I CCNGG 1 cut(s) 138
MvaI CCWGG 1 cut(s) 138
MvnI CGCG 1 cut(s) 231
NdeII GATC 3 cut(s) 92, 232, 253
NlaIII CATG 2 cut(s) 100, 115
NlaIV GGNNCC 2 cut(s) 30, 39
PaqCI CACCTGC 1 cut(s) 277
PfeI GAWTC 2 cut(s) 158, 290
PkrI GCNGC 1 cut(s) 118
Ppu21I YACGTR 1 cut(s) 251
Psp6I CCWGG 1 cut(s) 136
PspGI CCWGG 1 cut(s) 136
PspN4I GGNNCC 2 cut(s) 30, 39
PsuI RGATCY 1 cut(s) 92
PvuII CAGCTG 1 cut(s) 49
RsaI GTAC 1 cut(s) 53
RsaNI GTAC 1 cut(s) 52
SaqAI TTAA 1 cut(s) 182
SatI GCNGC 1 cut(s) 117
Sau3AI GATC 3 cut(s) 92, 232, 253
ScrFI CCNGG 1 cut(s) 138
SetI ASST 5 cut(s) 39, 51, 253, 271, 288
SfaNI GCATC 2 cut(s) 184, 253
Sse9I AATT 2 cut(s) 144, 280
SsiI CCGC 1 cut(s) 229
StyD4I CCNGG 1 cut(s) 136
TaaI ACNGT 2 cut(s) 22, 202
TaiI ACGT 1 cut(s) 253
TasI AATT 2 cut(s) 144, 280
TatI WGTACW 1 cut(s) 51
TfiI GAWTC 2 cut(s) 158, 290
Tru1I TTAA 1 cut(s) 182
Tru9I TTAA 1 cut(s) 182
TseI GCWGC 1 cut(s) 116
TspDTI ATGAA 1 cut(s) 150
XagI CCTNNNNNAGG 1 cut(s) 183
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.