Rmu_sc0003387.1_g000001

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0003387.1
OG0000108
Physical Location & Seq
Reverse (-)
2408 .. 5250
2843 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0003387.1_g000001.1.cds

Sequence Viewer

Length: 1515 bp
atgatcatcagtactactcttggtggaaacaaaaaggtcaaacctttaagtggagcaaagagcaatgggtttgggaacggtgcgtttcagccggaaatggaggaggagaaaagtaccgacgtcgtcattgtcggtgccggagttgctggtgcagctcttgcttacactcttgccaagcaaggacgtcatgtccatgtcattgaaagagacttgaccgagccagacagaattgttggcgagcttttgcagcctgggggttatctcaagttgattgagttgggtcttgaggaatgcgcaaatgagtccattgatgctcagaaggtgtttggatatgctctatacaaagatggaaaggatacaaaactgacttatcccttggaaaaatacagttcagatgtggctgggagaagtttccacaatgggcgtttcatccaaagaatgcgtgaaaaagctgcaactcttgcaaatgtgaaattagaacaaggatcagtgacaacactgatcaaggaaaagggcattgtcaaaggggtcatttacaaaaacaaggctggagaggtgatgagaacatatgctccactaacaatcgtgtgtgatggctgcttttcaaatctgcgcaaatcacttagtgcaccaaaggttgaaagtccctcttgttttgttggtttgatcttggaaaattgtgagctgccacacgcaaatcatggacatgtcattttgggagacccttcacccatcctgttttatcctatcagtagcaccgagattcgctgtttggtcgatgtacctggaacaaaagtaccttcagtagctagtggtgaaatggctagctatctgaaaactgtggtggctcctcaggttcccccacagctgtacaatgcttttatggttgcagtagagaaaggaaacattagatccatgcaaaacaaaagcatggctgctaatcctgttcccactcctggtgcaattttgttaggggattccttcaacatgaggcatcctttaacaggaggaggaatgaccgtggctctttcagacattgttcttctccgcgatcttcttagacccctgcgtgatctcaatgatgcaccggccttgtgcaattaccttgaatcattctacacacttcggaagcctgtgtcatctaccataaatacactggcaggtgctttgtacaaggttttttgtgcatcacctgatccagcaagacaggaaatgcgtgaagcatgttttggctatttgagccttggaggcatctgttcatatggacccgtatctcttctctctggtcttaacccccgtccactgcacttgtttctccatttctttgctgttgctatttatggcgtagggcgcttgatgtttccattcccttcacctaaacgcatgtggcttggggctagattgatcttgagtgcatcaggcatcatattcccgattataaagggagaaggagttagacagatgttctttcctgcaacagtgccagcatattacagatctgcacctgtttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

504

Amino Acids

54.62

Weight (kDa)

9.03

Isoelectric Point (pI)

42.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1439
AarI CACCTGC 1 cut(s) 1151
AatII GACGTC 2 cut(s) 123, 187
Acc16I TGCGCA 2 cut(s) 295, 614
Acc36I ACCTGC 1 cut(s) 1151
AccB1I GGYRCC 1 cut(s) 134
AccII CGCG 1 cut(s) 1050
AciI CCGC 1 cut(s) 1048
AclWI GGATC 3 cut(s) 493, 906, 1190
AcuI CTGAAG 1 cut(s) 786
AcyI GRCGYC 2 cut(s) 120, 184
AdeI CACNNNGTG 1 cut(s) 626
AfaI GTAC 6 cut(s) 13, 115, 783, 798, 872, 1172
AfiI CCNNNNNNNGG 3 cut(s) 50, 956, 1004
AflIII ACRYGT 1 cut(s) 706
AgsI TTSAA 5 cut(s) 203, 606, 641, 985, 1109
AhdI GACNNNNNGTC 1 cut(s) 188
AjnI CCWGG 3 cut(s) 250, 784, 955
AjuI GAANNNNNNNTTGG 2 cut(s) 1212, 1244
AloI GAACNNNNNNTCC 2 cut(s) 556, 588
AluBI AGCT 7 cut(s) 155, 241, 452, 685, 809, 828, 868
AluI AGCT 7 cut(s) 155, 241, 452, 685, 809, 828, 868
Alw21I GWGCWC 1 cut(s) 631
Alw26I GTCTC 2 cut(s) 201, 714
Alw44I GTGCAC 1 cut(s) 627
AlwI GGATC 3 cut(s) 493, 906, 1190
AoxI GGCC 1 cut(s) 1089
ApaLI GTGCAC 1 cut(s) 627
ApeKI GCWGC 6 cut(s) 152, 247, 452, 597, 685, 935
AspLEI GCGC 3 cut(s) 296, 615, 1353
AspS9I GGNCC 1 cut(s) 1265
AsuHPI GGTGA 5 cut(s) 568, 720, 827, 1182, 1365
AsuNHI GCTAGC 1 cut(s) 824
AvaII GGWCC 1 cut(s) 1265
AxyI CCTNAGG 1 cut(s) 852
BaeGI GKGCMC 1 cut(s) 631
BaeI ACNNNNGTAYC 2 cut(s) 780, 813
BanI GGYRCC 1 cut(s) 134
Bbv12I GWGCWC 1 cut(s) 631
BbvI GCAGC 6 cut(s) 164, 259, 439, 584, 672, 922
BccI CCATC 3 cut(s) 341, 587, 740
BciT130I CCWGG 3 cut(s) 252, 786, 957
BciVI GTATCC 1 cut(s) 349
BclI TGATCA 2 cut(s) 3, 501
BcoDI GTCTC 2 cut(s) 201, 714
BfaI CTAG 3 cut(s) 810, 825, 1398
BfoI RGCGCY 1 cut(s) 1354
BfuAI ACCTGC 1 cut(s) 1151
BfuI GTATCC 1 cut(s) 349
BglI GCCNNNNNGGC 1 cut(s) 1248
BglII AGATCT 1 cut(s) 1496
BisI GCNGC 6 cut(s) 153, 248, 453, 598, 686, 936
BlsI GCNGC 6 cut(s) 154, 249, 454, 599, 687, 937
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 3 cut(s) 252, 786, 957
Bme18I GGWCC 1 cut(s) 1265
BmeRI GACNNNNNGTC 1 cut(s) 188
BmgT120I GGNCC 1 cut(s) 1265
BmiI GGNNCC 4 cut(s) 136, 849, 858, 1267
BmrFI CCNGG 3 cut(s) 252, 786, 957
BmsI GCATC 7 cut(s) 301, 1003, 1072, 1196, 1260, 1424, 1431
BmtI GCTAGC 1 cut(s) 828
BpmI CTGGAG 1 cut(s) 570
BpuEI CTTGAG 3 cut(s) 248, 305, 1429
BsaHI GRCGYC 2 cut(s) 120, 184
BsaI GGTCTC 1 cut(s) 714
BsaJI CCNNGG 4 cut(s) 251, 375, 1020, 1243
BsaXI ACNNNNNCTCC 4 cut(s) 556, 586, 1437, 1467
Bsc4I CCNNNNNNNGG 3 cut(s) 50, 956, 1004
Bse118I RCCGGY 1 cut(s) 1087
Bse1I ACTGG 1 cut(s) 1161
Bse21I CCTNAGG 1 cut(s) 852
Bse3DI GCAATG 1 cut(s) 70
BseBI CCWGG 3 cut(s) 252, 786, 957
BseDI CCNNGG 4 cut(s) 251, 375, 1020, 1243
BseGI GGATG 3 cut(s) 429, 732, 994
BseLI CCNNNNNNNGG 3 cut(s) 50, 956, 1004
BseMI GCAATG 1 cut(s) 70
BseMII CTCAG 2 cut(s) 329, 866
BseNI ACTGG 1 cut(s) 1161
BseRI GAGGAG 4 cut(s) 116, 119, 840, 1023
BseSI GKGCMC 1 cut(s) 631
BseXI GCAGC 6 cut(s) 164, 259, 439, 584, 672, 922
BseYI CCCAGC 1 cut(s) 401
BsgI GTGCAG 3 cut(s) 171, 1289, 1485
Bsh1236I CGCG 1 cut(s) 1050
BshFI GGCC 1 cut(s) 1091
BshNI GGYRCC 1 cut(s) 134
BsiHKAI GWGCWC 1 cut(s) 631
BsiSI CCGG 3 cut(s) 92, 138, 1088
BslFI GGGAC 1 cut(s) 630
BslI CCNNNNNNNGG 3 cut(s) 50, 956, 1004
BsmAI GTCTC 2 cut(s) 201, 714
BsmFI GGGAC 1 cut(s) 630
BsmI GAATGC 2 cut(s) 296, 444
BsnI GGCC 1 cut(s) 1091
Bso31I GGTCTC 1 cut(s) 714
Bsp1286I GDGCHC 1 cut(s) 631
Bsp1407I TGTACA 2 cut(s) 870, 1170
BspACI CCGC 1 cut(s) 1048
BspANI GGCC 1 cut(s) 1091
BspCNI CTCAG 2 cut(s) 328, 865
BspFNI CGCG 1 cut(s) 1050
BspLI GGNNCC 4 cut(s) 136, 849, 858, 1267
BspMI ACCTGC 1 cut(s) 1151
BspOI GCTAGC 1 cut(s) 828
BspPI GGATC 3 cut(s) 493, 906, 1190
BspT107I GGYRCC 1 cut(s) 134
BspTNI GGTCTC 1 cut(s) 714
BsrDI GCAATG 1 cut(s) 70
BsrFI RCCGGY 1 cut(s) 1087
BsrGI TGTACA 2 cut(s) 870, 1170
BsrI ACTGG 1 cut(s) 1161
BssAI RCCGGY 1 cut(s) 1087
BssECI CCNNGG 4 cut(s) 251, 375, 1020, 1243
BssNI GRCGYC 2 cut(s) 120, 184
BssT1I CCWWGG 2 cut(s) 375, 1243
Bst2UI CCWGG 3 cut(s) 252, 786, 957
Bst4CI ACNGT 5 cut(s) 80, 389, 841, 1021, 1480
Bst6I CTCTTC 1 cut(s) 1281
BstACI GRCGYC 2 cut(s) 120, 184
BstAPI GCANNNNNTGC 2 cut(s) 158, 461
BstAUI TGTACA 2 cut(s) 870, 1170
BstC8I GCNNGC 3 cut(s) 239, 826, 1485
BstDEI CTNAG 4 cut(s) 315, 623, 852, 1058
BstDSI CCRYGG 1 cut(s) 1020
BstENI CCTNNNNNAGG 1 cut(s) 1002
BstF5I GGATG 3 cut(s) 429, 732, 994
BstFNI CGCG 1 cut(s) 1050
BstH2I RGCGCY 1 cut(s) 1354
BstHHI GCGC 3 cut(s) 296, 615, 1353
BstMAI GTCTC 2 cut(s) 201, 714
BstMWI GCNNNNNNNGC 8 cut(s) 143, 152, 158, 247, 461, 1239, 1248, 1350
BstNI CCWGG 3 cut(s) 252, 786, 957
BstNSI RCATGY 3 cut(s) 710, 1227, 1387
BstSCI CCNGG 3 cut(s) 250, 784, 955
BstSLI GKGCMC 1 cut(s) 631
BstUI CGCG 1 cut(s) 1050
BstV1I GCAGC 6 cut(s) 164, 259, 439, 584, 672, 922
BstX2I RGATCY 2 cut(s) 911, 1496
BstYI RGATCY 2 cut(s) 911, 1496
Bsu36I CCTNAGG 1 cut(s) 852
BsuI GTATCC 1 cut(s) 349
BsuRI GGCC 1 cut(s) 1091
BtgI CCRYGG 1 cut(s) 1020
BtsCI GGATG 3 cut(s) 429, 732, 994
BtsI GCAGTG 1 cut(s) 1301
BtsIMutI CAGTG 5 cut(s) 495, 497, 1154, 1301, 1485
BveI ACCTGC 1 cut(s) 1151
Cac8I GCNNGC 3 cut(s) 239, 826, 1485
CfoI GCGC 3 cut(s) 296, 615, 1353
Cfr10I RCCGGY 1 cut(s) 1087
Cfr13I GGNCC 1 cut(s) 1265
Csp6I GTAC 6 cut(s) 12, 114, 782, 797, 871, 1171
CspCI CAANNNNNGTGG 2 cut(s) 1290, 1325
CviAII CATG 9 cut(s) 188, 194, 701, 707, 916, 931, 988, 1224, 1384
CviQI GTAC 6 cut(s) 12, 114, 782, 797, 871, 1171
DdeI CTNAG 4 cut(s) 315, 623, 852, 1058
DraIII CACNNNGTG 1 cut(s) 626
DriI GACNNNNNGTC 1 cut(s) 188
Eam1104I CTCTTC 1 cut(s) 1281
Eam1105I GACNNNNNGTC 1 cut(s) 188
EarI CTCTTC 1 cut(s) 1281
Eco130I CCWWGG 2 cut(s) 375, 1243
Eco31I GGTCTC 1 cut(s) 714
Eco47I GGWCC 1 cut(s) 1265
Eco57I CTGAAG 1 cut(s) 786
Eco81I CCTNAGG 1 cut(s) 852
EcoNI CCTNNNNNAGG 1 cut(s) 1002
EcoRII CCWGG 3 cut(s) 250, 784, 955
EcoT14I CCWWGG 2 cut(s) 375, 1243
ErhI CCWWGG 2 cut(s) 375, 1243
FaeI CATG 9 cut(s) 191, 197, 704, 710, 919, 934, 991, 1227, 1387
FalI AAGNNNNNCTT 2 cut(s) 634, 666
FaqI GGGAC 1 cut(s) 630
FatI CATG 9 cut(s) 187, 193, 700, 706, 915, 930, 987, 1223, 1383
FauNDI CATATG 2 cut(s) 568, 1261
FbaI TGATCA 2 cut(s) 3, 501
Fnu4HI GCNGC 6 cut(s) 153, 248, 453, 598, 686, 936
FokI GGATG 3 cut(s) 416, 719, 981
Fsp4HI GCNGC 6 cut(s) 153, 248, 453, 598, 686, 936
FspBI CTAG 3 cut(s) 810, 825, 1398
FspI TGCGCA 2 cut(s) 295, 614
GlaI GCGC 3 cut(s) 295, 614, 1352
GluI GCNGC 6 cut(s) 153, 248, 453, 598, 686, 936
GsaI CCCAGC 1 cut(s) 405
GsuI CTGGAG 1 cut(s) 570
HaeII RGCGCY 1 cut(s) 1354
HaeIII GGCC 1 cut(s) 1091
HapII CCGG 3 cut(s) 92, 138, 1088
HhaI GCGC 3 cut(s) 296, 615, 1353
Hin1I GRCGYC 2 cut(s) 120, 184
Hin1II CATG 9 cut(s) 191, 197, 704, 710, 919, 934, 991, 1227, 1387
Hin6I GCGC 3 cut(s) 294, 613, 1351
HinP1I GCGC 3 cut(s) 294, 613, 1351
HinfI GANTC 4 cut(s) 302, 763, 977, 1109
HpaII CCGG 3 cut(s) 92, 138, 1088
HphI GGTGA 5 cut(s) 568, 720, 827, 1182, 1365
Hpy166II GTNNAC 3 cut(s) 629, 1301, 1510
Hpy188I TCNGA 5 cut(s) 318, 394, 834, 1033, 1128
Hpy188III TCNNGA 3 cut(s) 284, 1408, 1432
Hpy8I GTNNAC 3 cut(s) 629, 1301, 1510
Hpy99I CGWCG 2 cut(s) 122, 125
HpyAV CCTTC 6 cut(s) 313, 735, 810, 991, 1380, 1442
HpyCH4III ACNGT 5 cut(s) 80, 389, 841, 1021, 1480
HpyCH4IV ACGT 2 cut(s) 120, 184
HpyF10VI GCNNNNNNNGC 8 cut(s) 143, 152, 158, 247, 461, 1239, 1248, 1350
HpyF3I CTNAG 4 cut(s) 315, 623, 852, 1058
HpySE526I ACGT 2 cut(s) 120, 184
Hsp92I GRCGYC 2 cut(s) 120, 184
Hsp92II CATG 9 cut(s) 191, 197, 704, 710, 919, 934, 991, 1227, 1387
HspAI GCGC 3 cut(s) 294, 613, 1351
Ksp22I TGATCA 2 cut(s) 3, 501
LmnI GCTCC 3 cut(s) 53, 577, 853
Lsp1109I GCAGC 6 cut(s) 164, 259, 439, 584, 672, 922
LweI GCATC 7 cut(s) 301, 1003, 1072, 1196, 1260, 1424, 1431
MaeI CTAG 3 cut(s) 810, 825, 1398
MaeII ACGT 2 cut(s) 120, 184
MaeIII GTNAC 1 cut(s) 490
MboII GAAGA 3 cut(s) 1034, 1046, 1268
MflI RGATCY 2 cut(s) 911, 1496
MhlI GDGCHC 1 cut(s) 631
MluCI AATT 5 cut(s) 228, 473, 676, 963, 1099
MlyI GAGTC 1 cut(s) 311
MseI TTAA 3 cut(s) 47, 1001, 1290
MslI CAYNNNNRTG 2 cut(s) 192, 705
MspA1I CMGCKG 1 cut(s) 868
MspI CCGG 3 cut(s) 92, 138, 1088
MspR9I CCNGG 3 cut(s) 252, 786, 957
Mva1269I GAATGC 2 cut(s) 296, 444
MvaI CCWGG 3 cut(s) 252, 786, 957
MvnI CGCG 1 cut(s) 1050
MwoI GCNNNNNNNGC 8 cut(s) 143, 152, 158, 247, 461, 1239, 1248, 1350
NdeI CATATG 2 cut(s) 568, 1261
NheI GCTAGC 1 cut(s) 824
NlaIII CATG 9 cut(s) 191, 197, 704, 710, 919, 934, 991, 1227, 1387
NlaIV GGNNCC 4 cut(s) 136, 849, 858, 1267
NmuCI GTSAC 1 cut(s) 490
NsbI TGCGCA 2 cut(s) 295, 614
NspI RCATGY 3 cut(s) 710, 1227, 1387
PaqCI CACCTGC 1 cut(s) 1151
PciI ACATGT 1 cut(s) 706
PctI GAATGC 2 cut(s) 296, 444
PfeI GAWTC 3 cut(s) 763, 977, 1109
PflFI GACNNNGTC 1 cut(s) 122
PkrI GCNGC 6 cut(s) 154, 249, 454, 599, 687, 937
PleI GAGTC 1 cut(s) 310
PpsI GAGTC 1 cut(s) 310
PscI ACATGT 1 cut(s) 706
PsiI TTATAA 1 cut(s) 1439
Psp6I CCWGG 3 cut(s) 250, 784, 955
PspFI CCCAGC 1 cut(s) 401
PspGI CCWGG 3 cut(s) 250, 784, 955
PspN4I GGNNCC 4 cut(s) 136, 849, 858, 1267
PspPI GGNCC 1 cut(s) 1265
PsuI RGATCY 2 cut(s) 911, 1496
PsyI GACNNNGTC 1 cut(s) 122
PvuII CAGCTG 1 cut(s) 868
RsaI GTAC 6 cut(s) 13, 115, 783, 798, 872, 1172
RsaNI GTAC 6 cut(s) 12, 114, 782, 797, 871, 1171
RseI CAYNNNNRTG 2 cut(s) 192, 705
SaqAI TTAA 3 cut(s) 47, 1001, 1290
SatI GCNGC 6 cut(s) 153, 248, 453, 598, 686, 936
Sau96I GGNCC 1 cut(s) 1265
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 1 cut(s) 311
ScrFI CCNGG 3 cut(s) 252, 786, 957
SduI GDGCHC 1 cut(s) 631
SfaNI GCATC 7 cut(s) 301, 1003, 1072, 1196, 1260, 1424, 1431
SinI GGWCC 1 cut(s) 1265
SmiMI CAYNNNNRTG 2 cut(s) 192, 705
SmlI CTYRAG 3 cut(s) 263, 284, 1408
SmoI CTYRAG 3 cut(s) 263, 284, 1408
Sse9I AATT 5 cut(s) 228, 473, 676, 963, 1099
SsiI CCGC 1 cut(s) 1048
SspMI CTAG 3 cut(s) 810, 825, 1398
StyD4I CCNGG 3 cut(s) 250, 784, 955
StyI CCWWGG 2 cut(s) 375, 1243
TaaI ACNGT 5 cut(s) 80, 389, 841, 1021, 1480
TaiI ACGT 2 cut(s) 123, 187
TaqI TCGA 1 cut(s) 777
TaqII GACCGA 1 cut(s) 230
TasI AATT 5 cut(s) 228, 473, 676, 963, 1099
TatI WGTACW 3 cut(s) 11, 870, 1170
TfiI GAWTC 3 cut(s) 763, 977, 1109
Tru1I TTAA 3 cut(s) 47, 1001, 1290
Tru9I TTAA 3 cut(s) 47, 1001, 1290
TscAI CASTG 5 cut(s) 495, 504, 1161, 1308, 1485
TseFI GTSAC 1 cut(s) 490
TseI GCWGC 6 cut(s) 152, 247, 452, 597, 685, 935
Tsp45I GTSAC 1 cut(s) 490
TspDTI ATGAA 2 cut(s) 418, 1248
TspRI CASTG 5 cut(s) 495, 504, 1161, 1308, 1485
Tth111I GACNNNGTC 1 cut(s) 122
VneI GTGCAC 1 cut(s) 627
VpaK11BI GGWCC 1 cut(s) 1265
XagI CCTNNNNNAGG 1 cut(s) 1002
XceI RCATGY 3 cut(s) 710, 1227, 1387
XcmI CCANNNNNNNNNTGG 1 cut(s) 1153
XspI CTAG 3 cut(s) 810, 825, 1398
ZraI GACGTC 2 cut(s) 121, 185
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.