squalene
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 1129 |
| Acc36I | ACCTGC | 1 cut(s) | 1129 |
| AccB1I | GGYRCC | 4 cut(s) | 133, 173, 548, 1196 |
| AccII | CGCG | 1 cut(s) | 477 |
| AciI | CCGC | 5 cut(s) | 608, 923, 1159, 1233, 1384 |
| AclWI | GGATC | 2 cut(s) | 749, 1092 |
| AcuI | CTGAAG | 2 cut(s) | 819, 1500 |
| AcyI | GRCGYC | 1 cut(s) | 1406 |
| AfaI | GTAC | 5 cut(s) | 154, 231, 569, 790, 831 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 989, 1037, 1207 |
| AflII | CTTAAG | 1 cut(s) | 250 |
| AflIII | ACRYGT | 3 cut(s) | 226, 232, 739 |
| AgsI | TTSAA | 9 cut(s) | 242, 314, 326, 539, 639, 868, 1018, 1111, 1293 |
| AjiI | CACGTC | 1 cut(s) | 227 |
| AjnI | CCWGG | 2 cut(s) | 289, 988 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 589, 621 |
| AluBI | AGCT | 5 cut(s) | 429, 718, 842, 901, 1478 |
| AluI | AGCT | 5 cut(s) | 429, 718, 842, 901, 1478 |
| Alw26I | GTCTC | 3 cut(s) | 240, 1018, 1087 |
| AlwI | GGATC | 2 cut(s) | 749, 1092 |
| AoxI | GGCC | 1 cut(s) | 579 |
| ApeKI | GCWGC | 5 cut(s) | 191, 286, 485, 920, 971 |
| AspLEI | GCGC | 1 cut(s) | 477 |
| AspS9I | GGNCC | 1 cut(s) | 1298 |
| AsuC2I | CCSGG | 1 cut(s) | 819 |
| AsuHPI | GGTGA | 2 cut(s) | 287, 753 |
| AvaII | GGWCC | 1 cut(s) | 1298 |
| AxyI | CCTNAGG | 1 cut(s) | 885 |
| BaeGI | GKGCMC | 3 cut(s) | 551, 824, 1201 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 813, 846 |
| BanI | GGYRCC | 4 cut(s) | 133, 173, 548, 1196 |
| BbvCI | CCTCAGC | 1 cut(s) | 978 |
| BbvI | GCAGC | 5 cut(s) | 178, 298, 472, 932, 958 |
| BccI | CCATC | 3 cut(s) | 560, 620, 773 |
| BcgI | CGANNNNNNTGC | 4 cut(s) | 467, 501, 1103, 1137 |
| BciT130I | CCWGG | 2 cut(s) | 291, 990 |
| BclI | TGATCA | 1 cut(s) | 63 |
| BcnI | CCSGG | 1 cut(s) | 819 |
| BcoDI | GTCTC | 3 cut(s) | 240, 1018, 1087 |
| BfaI | CTAG | 2 cut(s) | 917, 1431 |
| BfrI | CTTAAG | 1 cut(s) | 250 |
| BfuAI | ACCTGC | 1 cut(s) | 1129 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 1281 |
| BisI | GCNGC | 5 cut(s) | 192, 287, 486, 921, 972 |
| BlsI | GCNGC | 5 cut(s) | 193, 288, 487, 922, 973 |
| Bme1390I | CCNGG | 3 cut(s) | 291, 819, 990 |
| Bme18I | GGWCC | 1 cut(s) | 1298 |
| BmgBI | CACGTC | 1 cut(s) | 227 |
| BmgT120I | GGNCC | 1 cut(s) | 1298 |
| BmiI | GGNNCC | 6 cut(s) | 135, 175, 550, 882, 891, 1198 |
| BmrFI | CCNGG | 3 cut(s) | 291, 819, 990 |
| BmsI | GCATC | 6 cut(s) | 340, 620, 1000, 1105, 1229, 1293 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 285, 317 |
| BpmI | CTGGAG | 2 cut(s) | 312, 1059 |
| Bpu10I | CCTNAGC | 1 cut(s) | 978 |
| BpuEI | CTTGAG | 1 cut(s) | 1462 |
| BpuMI | CCSGG | 1 cut(s) | 819 |
| BsaHI | GRCGYC | 1 cut(s) | 1406 |
| BsaI | GGTCTC | 1 cut(s) | 1087 |
| BsaJI | CCNNGG | 3 cut(s) | 414, 792, 1276 |
| BsaWI | WCCGGW | 1 cut(s) | 136 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 589, 619 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 989, 1037, 1207 |
| Bse118I | RCCGGY | 3 cut(s) | 434, 967, 1193 |
| Bse1I | ACTGG | 1 cut(s) | 1042 |
| Bse21I | CCTNAGG | 1 cut(s) | 885 |
| Bse3DI | GCAATG | 1 cut(s) | 397 |
| BseBI | CCWGG | 2 cut(s) | 291, 990 |
| BseDI | CCNNGG | 3 cut(s) | 414, 792, 1276 |
| BseGI | GGATG | 7 cut(s) | 462, 635, 765, 1015, 1027, 1338, 1422 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 989, 1037, 1207 |
| BseMI | GCAATG | 1 cut(s) | 397 |
| BseMII | CTCAG | 5 cut(s) | 368, 899, 992, 1082, 1329 |
| BseNI | ACTGG | 1 cut(s) | 1042 |
| BseRI | GAGGAG | 4 cut(s) | 602, 873, 966, 1056 |
| BseSI | GKGCMC | 3 cut(s) | 551, 824, 1201 |
| BseXI | GCAGC | 5 cut(s) | 178, 298, 472, 932, 958 |
| Bsh1236I | CGCG | 1 cut(s) | 477 |
| BshFI | GGCC | 1 cut(s) | 581 |
| BshNI | GGYRCC | 4 cut(s) | 133, 173, 548, 1196 |
| BsiSI | CCGG | 7 cut(s) | 137, 177, 435, 582, 818, 968, 1194 |
| BslFI | GGGAC | 1 cut(s) | 110 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 989, 1037, 1207 |
| BsmAI | GTCTC | 3 cut(s) | 240, 1018, 1087 |
| BsmFI | GGGAC | 1 cut(s) | 110 |
| BsnI | GGCC | 1 cut(s) | 581 |
| Bso31I | GGTCTC | 1 cut(s) | 1087 |
| Bsp1286I | GDGCHC | 3 cut(s) | 551, 824, 1201 |
| Bsp1407I | TGTACA | 2 cut(s) | 229, 567 |
| Bsp143I | GATC | 5 cut(s) | 63, 699, 754, 1084, 1437 |
| BspACI | CCGC | 5 cut(s) | 608, 923, 1159, 1233, 1384 |
| BspANI | GGCC | 1 cut(s) | 581 |
| BspCNI | CTCAG | 5 cut(s) | 367, 898, 991, 1083, 1328 |
| BspFNI | CGCG | 1 cut(s) | 477 |
| BspLI | GGNNCC | 6 cut(s) | 135, 175, 550, 882, 891, 1198 |
| BspMI | ACCTGC | 1 cut(s) | 1129 |
| BspPI | GGATC | 2 cut(s) | 749, 1092 |
| BspT107I | GGYRCC | 4 cut(s) | 133, 173, 548, 1196 |
| BspTI | CTTAAG | 1 cut(s) | 250 |
| BspTNI | GGTCTC | 1 cut(s) | 1087 |
| BsrDI | GCAATG | 1 cut(s) | 397 |
| BsrFI | RCCGGY | 3 cut(s) | 434, 967, 1193 |
| BsrGI | TGTACA | 2 cut(s) | 229, 567 |
| BsrI | ACTGG | 1 cut(s) | 1042 |
| BssAI | RCCGGY | 3 cut(s) | 434, 967, 1193 |
| BssECI | CCNNGG | 3 cut(s) | 414, 792, 1276 |
| BssMI | GATC | 5 cut(s) | 63, 699, 754, 1084, 1437 |
| BssNI | GRCGYC | 1 cut(s) | 1406 |
| BssT1I | CCWWGG | 2 cut(s) | 414, 1276 |
| Bst2UI | CCWGG | 2 cut(s) | 291, 990 |
| Bst4CI | ACNGT | 5 cut(s) | 122, 523, 713, 874, 1054 |
| Bst6I | CTCTTC | 1 cut(s) | 498 |
| BstACI | GRCGYC | 1 cut(s) | 1406 |
| BstAFI | CTTAAG | 1 cut(s) | 250 |
| BstAUI | TGTACA | 2 cut(s) | 229, 567 |
| BstC8I | GCNNGC | 5 cut(s) | 436, 965, 969, 1163, 1258 |
| BstDEI | CTNAG | 7 cut(s) | 354, 885, 978, 1079, 1091, 1100, 1315 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 1205 |
| BstF5I | GGATG | 7 cut(s) | 462, 635, 765, 1015, 1027, 1338, 1422 |
| BstFNI | CGCG | 1 cut(s) | 477 |
| BstHHI | GCGC | 1 cut(s) | 477 |
| BstKTI | GATC | 5 cut(s) | 66, 702, 757, 1087, 1440 |
| BstMAI | GTCTC | 3 cut(s) | 240, 1018, 1087 |
| BstMBI | GATC | 5 cut(s) | 63, 699, 754, 1084, 1437 |
| BstMWI | GCNNNNNNNGC | 7 cut(s) | 182, 191, 197, 435, 630, 917, 1281 |
| BstNI | CCWGG | 2 cut(s) | 291, 990 |
| BstNSI | RCATGY | 4 cut(s) | 236, 743, 967, 1260 |
| BstSCI | CCNGG | 3 cut(s) | 289, 817, 988 |
| BstSLI | GKGCMC | 3 cut(s) | 551, 824, 1201 |
| BstUI | CGCG | 1 cut(s) | 477 |
| BstV1I | GCAGC | 5 cut(s) | 178, 298, 472, 932, 958 |
| BstX2I | RGATCY | 2 cut(s) | 754, 1084 |
| BstYI | RGATCY | 2 cut(s) | 754, 1084 |
| Bsu36I | CCTNAGG | 1 cut(s) | 885 |
| BsuRI | GGCC | 1 cut(s) | 581 |
| BtgZI | GCGATG | 2 cut(s) | 639, 1206 |
| BtrI | CACGTC | 1 cut(s) | 227 |
| BtsCI | GGATG | 7 cut(s) | 462, 635, 765, 1015, 1027, 1338, 1422 |
| BtsIMutI | CAGTG | 1 cut(s) | 528 |
| BveI | ACCTGC | 1 cut(s) | 1129 |
| Cac8I | GCNNGC | 5 cut(s) | 436, 965, 969, 1163, 1258 |
| CfoI | GCGC | 1 cut(s) | 477 |
| Cfr10I | RCCGGY | 3 cut(s) | 434, 967, 1193 |
| Cfr13I | GGNCC | 1 cut(s) | 1298 |
| CseI | GACGC | 2 cut(s) | 635, 1414 |
| Csp6I | GTAC | 5 cut(s) | 153, 230, 568, 789, 830 |
| CviAII | CATG | 7 cut(s) | 233, 725, 734, 740, 964, 1021, 1257 |
| CviQI | GTAC | 5 cut(s) | 153, 230, 568, 789, 830 |
| DdeI | CTNAG | 7 cut(s) | 354, 885, 978, 1079, 1091, 1100, 1315 |
| DpnI | GATC | 5 cut(s) | 65, 701, 756, 1086, 1439 |
| DpnII | GATC | 5 cut(s) | 63, 699, 754, 1084, 1437 |
| Eam1104I | CTCTTC | 1 cut(s) | 498 |
| EarI | CTCTTC | 1 cut(s) | 498 |
| Eco130I | CCWWGG | 2 cut(s) | 414, 1276 |
| Eco31I | GGTCTC | 1 cut(s) | 1087 |
| Eco47I | GGWCC | 1 cut(s) | 1298 |
| Eco57I | CTGAAG | 2 cut(s) | 819, 1500 |
| Eco81I | CCTNAGG | 1 cut(s) | 885 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 1205 |
| EcoRII | CCWGG | 2 cut(s) | 289, 988 |
| EcoT14I | CCWWGG | 2 cut(s) | 414, 1276 |
| ErhI | CCWWGG | 2 cut(s) | 414, 1276 |
| FaeI | CATG | 7 cut(s) | 236, 728, 737, 743, 967, 1024, 1260 |
| FaqI | GGGAC | 1 cut(s) | 110 |
| FatI | CATG | 7 cut(s) | 232, 724, 733, 739, 963, 1020, 1256 |
| FauI | CCCGC | 1 cut(s) | 1240 |
| FbaI | TGATCA | 1 cut(s) | 63 |
| Fnu4HI | GCNGC | 5 cut(s) | 192, 287, 486, 921, 972 |
| FokI | GGATG | 7 cut(s) | 449, 642, 752, 1014, 1022, 1325, 1429 |
| Fsp4HI | GCNGC | 5 cut(s) | 192, 287, 486, 921, 972 |
| FspBI | CTAG | 2 cut(s) | 917, 1431 |
| GlaI | GCGC | 1 cut(s) | 476 |
| GluI | GCNGC | 5 cut(s) | 192, 287, 486, 921, 972 |
| GsuI | CTGGAG | 2 cut(s) | 312, 1059 |
| HaeIII | GGCC | 1 cut(s) | 581 |
| HapII | CCGG | 7 cut(s) | 137, 177, 435, 582, 818, 968, 1194 |
| HgaI | GACGC | 2 cut(s) | 635, 1414 |
| HhaI | GCGC | 1 cut(s) | 477 |
| Hin1I | GRCGYC | 1 cut(s) | 1406 |
| Hin1II | CATG | 7 cut(s) | 236, 728, 737, 743, 967, 1024, 1260 |
| Hin6I | GCGC | 1 cut(s) | 475 |
| HinP1I | GCGC | 1 cut(s) | 475 |
| HinfI | GANTC | 8 cut(s) | 341, 676, 745, 936, 1377, 1393, 1455, 1551 |
| HpaII | CCGG | 7 cut(s) | 137, 177, 435, 582, 818, 968, 1194 |
| HphI | GGTGA | 2 cut(s) | 287, 753 |
| Hpy166II | GTNNAC | 3 cut(s) | 7, 230, 278 |
| Hpy188I | TCNGA | 6 cut(s) | 115, 357, 666, 944, 1066, 1092 |
| Hpy188III | TCNNGA | 4 cut(s) | 323, 1402, 1441, 1465 |
| Hpy8I | GTNNAC | 3 cut(s) | 7, 230, 278 |
| Hpy99I | CGWCG | 4 cut(s) | 161, 228, 651, 1408 |
| HpyAV | CCTTC | 4 cut(s) | 212, 768, 843, 1475 |
| HpyCH4III | ACNGT | 5 cut(s) | 122, 523, 713, 874, 1054 |
| HpyCH4IV | ACGT | 4 cut(s) | 99, 159, 226, 599 |
| HpyCH4V | TGCA | 9 cut(s) | 104, 286, 335, 488, 728, 952, 1118, 1220, 1448 |
| HpyF10VI | GCNNNNNNNGC | 7 cut(s) | 182, 191, 197, 435, 630, 917, 1281 |
| HpyF3I | CTNAG | 7 cut(s) | 354, 885, 978, 1079, 1091, 1100, 1315 |
| HpySE526I | ACGT | 4 cut(s) | 99, 159, 226, 599 |
| Hsp92I | GRCGYC | 1 cut(s) | 1406 |
| Hsp92II | CATG | 7 cut(s) | 236, 728, 737, 743, 967, 1024, 1260 |
| HspAI | GCGC | 1 cut(s) | 475 |
| KroI | GCCGGC | 2 cut(s) | 434, 967 |
| KroNI | GCCGGC | 2 cut(s) | 436, 969 |
| Ksp22I | TGATCA | 1 cut(s) | 63 |
| Kzo9I | GATC | 5 cut(s) | 63, 699, 754, 1084, 1437 |
| LmnI | GCTCC | 3 cut(s) | 610, 886, 979 |
| Lsp1109I | GCAGC | 5 cut(s) | 178, 298, 472, 932, 958 |
| LweI | GCATC | 6 cut(s) | 340, 620, 1000, 1105, 1229, 1293 |
| MaeI | CTAG | 2 cut(s) | 917, 1431 |
| MaeII | ACGT | 4 cut(s) | 99, 159, 226, 599 |
| MaeIII | GTNAC | 1 cut(s) | 523 |
| MalI | GATC | 5 cut(s) | 65, 701, 756, 1086, 1439 |
| MboI | GATC | 5 cut(s) | 63, 699, 754, 1084, 1437 |
| MboII | GAAGA | 6 cut(s) | 338, 485, 551, 1067, 1079, 1560 |
| MfeI | CAATTG | 1 cut(s) | 105 |
| MflI | RGATCY | 2 cut(s) | 754, 1084 |
| MhlI | GDGCHC | 3 cut(s) | 551, 824, 1201 |
| MluCI | AATT | 7 cut(s) | 105, 267, 305, 314, 506, 534, 859 |
| MlyI | GAGTC | 2 cut(s) | 350, 1386 |
| MmeI | TCCRAC | 1 cut(s) | 1089 |
| MroNI | GCCGGC | 2 cut(s) | 434, 967 |
| MseI | TTAA | 7 cut(s) | 251, 905, 1034, 1323, 1388, 1473, 1579 |
| MslI | CAYNNNNRTG | 1 cut(s) | 738 |
| MspA1I | CMGCKG | 1 cut(s) | 923 |
| MspCI | CTTAAG | 1 cut(s) | 250 |
| MspI | CCGG | 7 cut(s) | 137, 177, 435, 582, 818, 968, 1194 |
| MspR9I | CCNGG | 3 cut(s) | 291, 819, 990 |
| MunI | CAATTG | 1 cut(s) | 105 |
| MvaI | CCWGG | 2 cut(s) | 291, 990 |
| MvnI | CGCG | 1 cut(s) | 477 |
| MwoI | GCNNNNNNNGC | 7 cut(s) | 182, 191, 197, 435, 630, 917, 1281 |
| NaeI | GCCGGC | 2 cut(s) | 436, 969 |
| NciI | CCSGG | 1 cut(s) | 819 |
| NdeII | GATC | 5 cut(s) | 63, 699, 754, 1084, 1437 |
| NgoMIV | GCCGGC | 2 cut(s) | 434, 967 |
| NlaIII | CATG | 7 cut(s) | 236, 728, 737, 743, 967, 1024, 1260 |
| NlaIV | GGNNCC | 6 cut(s) | 135, 175, 550, 882, 891, 1198 |
| NmuCI | GTSAC | 1 cut(s) | 523 |
| NspI | RCATGY | 4 cut(s) | 236, 743, 967, 1260 |
| PaeI | GCATGC | 2 cut(s) | 967, 1260 |
| PaqCI | CACCTGC | 1 cut(s) | 1129 |
| PciI | ACATGT | 2 cut(s) | 232, 739 |
| PdiI | GCCGGC | 2 cut(s) | 436, 969 |
| PfeI | GAWTC | 6 cut(s) | 676, 745, 936, 1393, 1455, 1551 |
| PflFI | GACNNNGTC | 1 cut(s) | 161 |
| PkrI | GCNGC | 5 cut(s) | 193, 288, 487, 922, 973 |
| PleI | GAGTC | 2 cut(s) | 349, 1385 |
| PpsI | GAGTC | 2 cut(s) | 349, 1385 |
| PscI | ACATGT | 2 cut(s) | 232, 739 |
| Psp6I | CCWGG | 2 cut(s) | 289, 988 |
| PspGI | CCWGG | 2 cut(s) | 289, 988 |
| PspN4I | GGNNCC | 6 cut(s) | 135, 175, 550, 882, 891, 1198 |
| PspPI | GGNCC | 1 cut(s) | 1298 |
| PsuI | RGATCY | 2 cut(s) | 754, 1084 |
| PsyI | GACNNNGTC | 1 cut(s) | 161 |
| RsaI | GTAC | 5 cut(s) | 154, 231, 569, 790, 831 |
| RsaNI | GTAC | 5 cut(s) | 153, 230, 568, 789, 830 |
| RseI | CAYNNNNRTG | 1 cut(s) | 738 |
| SaqAI | TTAA | 7 cut(s) | 251, 905, 1034, 1323, 1388, 1473, 1579 |
| SatI | GCNGC | 5 cut(s) | 192, 287, 486, 921, 972 |
| Sau3AI | GATC | 5 cut(s) | 63, 699, 754, 1084, 1437 |
| Sau96I | GGNCC | 1 cut(s) | 1298 |
| SchI | GAGTC | 2 cut(s) | 350, 1386 |
| ScrFI | CCNGG | 3 cut(s) | 291, 819, 990 |
| SduI | GDGCHC | 3 cut(s) | 551, 824, 1201 |
| SfaNI | GCATC | 6 cut(s) | 340, 620, 1000, 1105, 1229, 1293 |
| SinI | GGWCC | 1 cut(s) | 1298 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 738 |
| SmlI | CTYRAG | 2 cut(s) | 250, 1441 |
| SmoI | CTYRAG | 2 cut(s) | 250, 1441 |
| SphI | GCATGC | 2 cut(s) | 967, 1260 |
| Sse9I | AATT | 7 cut(s) | 105, 267, 305, 314, 506, 534, 859 |
| SsiI | CCGC | 5 cut(s) | 608, 923, 1159, 1233, 1384 |
| SspI | AATATT | 1 cut(s) | 670 |
| SspMI | CTAG | 2 cut(s) | 917, 1431 |
| StyD4I | CCNGG | 3 cut(s) | 289, 817, 988 |
| StyI | CCWWGG | 2 cut(s) | 414, 1276 |
| TaaI | ACNGT | 5 cut(s) | 122, 523, 713, 874, 1054 |
| TaiI | ACGT | 4 cut(s) | 102, 162, 229, 602 |
| TasI | AATT | 7 cut(s) | 105, 267, 305, 314, 506, 534, 859 |
| TatI | WGTACW | 2 cut(s) | 229, 567 |
| TfiI | GAWTC | 6 cut(s) | 676, 745, 936, 1393, 1455, 1551 |
| Tru1I | TTAA | 7 cut(s) | 251, 905, 1034, 1323, 1388, 1473, 1579 |
| Tru9I | TTAA | 7 cut(s) | 251, 905, 1034, 1323, 1388, 1473, 1579 |
| TscAI | CASTG | 1 cut(s) | 528 |
| TseFI | GTSAC | 1 cut(s) | 523 |
| TseI | GCWGC | 5 cut(s) | 191, 286, 485, 920, 971 |
| Tsp45I | GTSAC | 1 cut(s) | 523 |
| TspDTI | ATGAA | 4 cut(s) | 437, 451, 1327, 1532 |
| TspGWI | ACGGA | 2 cut(s) | 669, 1429 |
| TspRI | CASTG | 1 cut(s) | 528 |
| Tth111I | GACNNNGTC | 1 cut(s) | 161 |
| Vha464I | CTTAAG | 1 cut(s) | 250 |
| VpaK11BI | GGWCC | 1 cut(s) | 1298 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 1205 |
| XceI | RCATGY | 4 cut(s) | 236, 743, 967, 1260 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 505, 1416 |
| XspI | CTAG | 2 cut(s) | 917, 1431 |