Rmu_sc0037307.1_g000001

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0037307.1
OG0000108
Physical Location & Seq
Reverse (-)
128 .. 1181
1054 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0037307.1_g000001.1.cds

Sequence Viewer

Length: 543 bp
atggtgtcttacgagtacgttctgggtggagtcttggcttctctgctcggctctgttttcttcatgatcatcaccagcacttttagcgccaagaaaaaggtagaggctttcaagagtgataatgggtttgtgaggatggcgcagaacggtgtgtttcgaccggagatggaggaggaggagaaaagtaccgacgtcgtcattgtcggcgccggagttgccggtgcagctcttgcttacactcttgccaaggaaggacgccgtgtacatgttattgaaagagacttgagtgagccggacagaattgttggtgagcttttgcagcctgggggttatctcaagttgattgagttgggtcttgaagactgtgcaaacgagtcaattgatgctcagaaggtctttggttatgctctttacaaagatggcaaggatacaaaactatcttatccgttggagcagtatagttcagatgtggctgggagaagtttccacaatgggcggtttattcaaagaatgcgtgaaaaagctgcaattctttcaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

180

Amino Acids

19.86

Weight (kDa)

5.8

Isoelectric Point (pI)

30.59

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 195
AccB1I GGYRCC 1 cut(s) 206
AciI CCGC 1 cut(s) 496
AcyI GRCGYC 3 cut(s) 192, 207, 256
AfaI GTAC 3 cut(s) 17, 187, 264
AflIII ACRYGT 1 cut(s) 265
AgsI TTSAA 5 cut(s) 112, 275, 359, 506, 537
AjnI CCWGG 1 cut(s) 322
AluBI AGCT 3 cut(s) 227, 313, 524
AluI AGCT 3 cut(s) 227, 313, 524
Alw26I GTCTC 1 cut(s) 273
ApeKI GCWGC 3 cut(s) 224, 319, 524
AspLEI GCGC 3 cut(s) 89, 142, 209
AsuHPI GGTGA 2 cut(s) 64, 320
BanI GGYRCC 1 cut(s) 206
BbsI GAAGAC 1 cut(s) 366
BbvI GCAGC 3 cut(s) 236, 331, 511
BccI CCATC 3 cut(s) 130, 160, 413
BceAI ACGGC 1 cut(s) 243
BciT130I CCWGG 1 cut(s) 324
BciVI GTATCC 1 cut(s) 421
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 1 cut(s) 273
BfoI RGCGCY 2 cut(s) 90, 210
BfuI GTATCC 1 cut(s) 421
BisI GCNGC 3 cut(s) 225, 320, 525
BlsI GCNGC 3 cut(s) 226, 321, 526
Bme1390I CCNGG 1 cut(s) 324
BmiI GGNNCC 1 cut(s) 208
BmrFI CCNGG 1 cut(s) 324
BmsI GCATC 1 cut(s) 373
BpiI GAAGAC 1 cut(s) 366
BpuEI CTTGAG 2 cut(s) 304, 320
BsaHI GRCGYC 3 cut(s) 192, 207, 256
BsaJI CCNNGG 2 cut(s) 246, 323
BsaWI WCCGGW 1 cut(s) 160
Bse118I RCCGGY 1 cut(s) 218
BseBI CCWGG 1 cut(s) 324
BseDI CCNNGG 2 cut(s) 246, 323
BseGI GGATG 1 cut(s) 141
BseMII CTCAG 1 cut(s) 401
BseRI GAGGAG 3 cut(s) 185, 188, 191
BseXI GCAGC 3 cut(s) 236, 331, 511
BseYI CCCAGC 1 cut(s) 473
BsgI GTGCAG 1 cut(s) 243
Bsh1285I CGRYCG 1 cut(s) 161
BshNI GGYRCC 1 cut(s) 206
BsiEI CGRYCG 1 cut(s) 161
BsiSI CCGG 4 cut(s) 161, 210, 219, 293
BsmAI GTCTC 1 cut(s) 273
BsmI GAATGC 1 cut(s) 516
Bsp1407I TGTACA 1 cut(s) 262
Bsp143I GATC 1 cut(s) 66
BspACI CCGC 1 cut(s) 496
BspCNI CTCAG 1 cut(s) 400
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 208
BspT107I GGYRCC 1 cut(s) 206
BsrFI RCCGGY 1 cut(s) 218
BsrGI TGTACA 1 cut(s) 262
BssAI RCCGGY 1 cut(s) 218
BssECI CCNNGG 2 cut(s) 246, 323
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 3 cut(s) 192, 207, 256
BssT1I CCWWGG 1 cut(s) 246
Bst2UI CCWGG 1 cut(s) 324
Bst4CI ACNGT 2 cut(s) 149, 365
BstACI GRCGYC 3 cut(s) 192, 207, 256
BstAPI GCANNNNNTGC 1 cut(s) 230
BstAUI TGTACA 1 cut(s) 262
BstDEI CTNAG 1 cut(s) 387
BstF5I GGATG 1 cut(s) 141
BstH2I RGCGCY 2 cut(s) 90, 210
BstHHI GCGC 3 cut(s) 89, 142, 209
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 273
BstMBI GATC 1 cut(s) 66
BstMCI CGRYCG 1 cut(s) 161
BstMWI GCNNNNNNNGC 5 cut(s) 84, 215, 224, 230, 319
BstNI CCWGG 1 cut(s) 324
BstNSI RCATGY 1 cut(s) 269
BstSCI CCNGG 1 cut(s) 322
BstV1I GCAGC 3 cut(s) 236, 331, 511
BstV2I GAAGAC 1 cut(s) 366
BsuI GTATCC 1 cut(s) 421
BtsCI GGATG 1 cut(s) 141
CciI TCATGA 1 cut(s) 63
CfoI GCGC 3 cut(s) 89, 142, 209
Cfr10I RCCGGY 1 cut(s) 218
CseI GACGC 1 cut(s) 264
Csp6I GTAC 3 cut(s) 16, 186, 263
CviAII CATG 2 cut(s) 64, 266
CviJI RGCY 9 cut(s) 38, 51, 107, 227, 292, 313, 322, 473, 524
CviKI_1 RGCY 9 cut(s) 38, 51, 107, 227, 292, 313, 322, 473, 524
CviQI GTAC 3 cut(s) 16, 186, 263
DdeI CTNAG 1 cut(s) 387
DinI GGCGCC 1 cut(s) 208
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 246
EcoRII CCWGG 1 cut(s) 322
EcoT14I CCWWGG 1 cut(s) 246
EgeI GGCGCC 1 cut(s) 208
EheI GGCGCC 1 cut(s) 208
ErhI CCWWGG 1 cut(s) 246
FaeI CATG 2 cut(s) 67, 269
FaiI YATR 4 cut(s) 65, 267, 405, 459
FatI CATG 2 cut(s) 63, 265
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 3 cut(s) 225, 320, 525
FokI GGATG 1 cut(s) 148
Fsp4HI GCNGC 3 cut(s) 225, 320, 525
GlaI GCGC 3 cut(s) 88, 141, 208
GluI GCNGC 3 cut(s) 225, 320, 525
GsaI CCCAGC 1 cut(s) 477
HaeII RGCGCY 2 cut(s) 90, 210
HapII CCGG 4 cut(s) 161, 210, 219, 293
HgaI GACGC 1 cut(s) 264
HhaI GCGC 3 cut(s) 89, 142, 209
Hin1I GRCGYC 3 cut(s) 192, 207, 256
Hin1II CATG 2 cut(s) 67, 269
Hin6I GCGC 3 cut(s) 87, 140, 207
HinP1I GCGC 3 cut(s) 87, 140, 207
HinfI GANTC 2 cut(s) 30, 374
HpaII CCGG 4 cut(s) 161, 210, 219, 293
HphI GGTGA 2 cut(s) 64, 320
Hpy166II GTNNAC 1 cut(s) 263
Hpy188I TCNGA 2 cut(s) 390, 466
Hpy188III TCNNGA 3 cut(s) 64, 112, 356
Hpy8I GTNNAC 1 cut(s) 263
Hpy99I CGWCG 2 cut(s) 194, 197
HpyAV CCTTC 2 cut(s) 245, 385
HpyCH4III ACNGT 2 cut(s) 149, 365
HpyCH4IV ACGT 2 cut(s) 18, 192
HpyCH4V TGCA 4 cut(s) 224, 319, 368, 527
HpyF10VI GCNNNNNNNGC 5 cut(s) 84, 215, 224, 230, 319
HpyF3I CTNAG 1 cut(s) 387
HpySE526I ACGT 2 cut(s) 18, 192
Hsp92I GRCGYC 3 cut(s) 192, 207, 256
Hsp92II CATG 2 cut(s) 67, 269
HspAI GCGC 3 cut(s) 87, 140, 207
KasI GGCGCC 1 cut(s) 206
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 451
LpnPI CCDG 9 cut(s) 8, 88, 174, 223, 232, 306, 309, 336, 459
Lsp1109I GCAGC 3 cut(s) 236, 331, 511
LweI GCATC 1 cut(s) 373
MaeII ACGT 2 cut(s) 18, 192
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 52, 371
MfeI CAATTG 1 cut(s) 378
MluCI AATT 3 cut(s) 300, 378, 528
Mly113I GGCGCC 1 cut(s) 207
MlyI GAGTC 2 cut(s) 39, 383
MmeI TCCRAC 1 cut(s) 429
MnlI CCTC 5 cut(s) 97, 126, 163, 166, 169
MspI CCGG 4 cut(s) 161, 210, 219, 293
MspR9I CCNGG 1 cut(s) 324
MunI CAATTG 1 cut(s) 378
Mva1269I GAATGC 1 cut(s) 516
MvaI CCWGG 1 cut(s) 324
MwoI GCNNNNNNNGC 5 cut(s) 84, 215, 224, 230, 319
NarI GGCGCC 1 cut(s) 207
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 67, 269
NlaIV GGNNCC 1 cut(s) 208
NmeAIII GCCGAG 1 cut(s) 27
NspI RCATGY 1 cut(s) 269
PagI TCATGA 1 cut(s) 63
PciI ACATGT 1 cut(s) 265
PctI GAATGC 1 cut(s) 516
PflFI GACNNNGTC 1 cut(s) 194
PkrI GCNGC 3 cut(s) 226, 321, 526
PleI GAGTC 2 cut(s) 38, 382
PluTI GGCGCC 1 cut(s) 210
PpsI GAGTC 2 cut(s) 38, 382
PscI ACATGT 1 cut(s) 265
Psp6I CCWGG 1 cut(s) 322
PspFI CCCAGC 1 cut(s) 473
PspGI CCWGG 1 cut(s) 322
PspN4I GGNNCC 1 cut(s) 208
PsyI GACNNNGTC 1 cut(s) 194
RsaI GTAC 3 cut(s) 17, 187, 264
RsaNI GTAC 3 cut(s) 16, 186, 263
SatI GCNGC 3 cut(s) 225, 320, 525
Sau3AI GATC 1 cut(s) 66
SchI GAGTC 2 cut(s) 39, 383
ScrFI CCNGG 1 cut(s) 324
SetI ASST 7 cut(s) 21, 102, 195, 229, 315, 396, 526
SfaNI GCATC 1 cut(s) 373
SfoI GGCGCC 1 cut(s) 208
SmlI CTYRAG 2 cut(s) 283, 335
SmoI CTYRAG 2 cut(s) 283, 335
Sse9I AATT 3 cut(s) 300, 378, 528
SsiI CCGC 1 cut(s) 496
SspDI GGCGCC 1 cut(s) 206
StyD4I CCNGG 1 cut(s) 322
StyI CCWWGG 1 cut(s) 246
TaaI ACNGT 2 cut(s) 149, 365
TaiI ACGT 2 cut(s) 21, 195
TaqI TCGA 1 cut(s) 157
TasI AATT 3 cut(s) 300, 378, 528
TatI WGTACW 1 cut(s) 262
TseI GCWGC 3 cut(s) 224, 319, 524
TspDTI ATGAA 1 cut(s) 52
TspGWI ACGGA 1 cut(s) 435
Tth111I GACNNNGTC 1 cut(s) 194
XceI RCATGY 1 cut(s) 269
ZraI GACGTC 1 cut(s) 193
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.