MD07G1041600.v1.1

Squalene monooxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000108
Physical Location & Seq
Forward (+)
3465051 .. 3468134
3084 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1041600.v1.1.491

Sequence Viewer

Length: 1587 bp
ATGGTTTACGAGTATGTTCTTGCTGGTGTCTTGGTTTCTCTGTTGGGTTCGGTTTTCTTTGTGATCATAAACAATACTTTGAGCGAAAATAAGAGGGACGTTGCAATTGTGTCGGAAAACGGTGTTTGTTTGGCACCGGAGATTGAGAAAAGTACCGACGTTGTCATTGTTGGTGCCGGAGTTGCTGGTGCTGCTCTTGCTTACACTCTTGGAAAGGAAGGACGACGTGTACATGTGATTGAAAGAGACTTAAGTGAGCCAGACAGAATTGTGGGTGAACTATTACAGCCTGGAGGCTATCTCAAATTGATTGAATTAGGTCTTGAAGATTGTGCTAATGAGTCCATTGATGCTCAGAAAGTGTTTGGTTATGCTCTTTACAAAAATGGCAATGATACAAAACTATCATATCCCTTGGAAACATATAGCTCTGACATCGCCGGCAGAAGTTTTCACAACGGGCGTTTCATCCAAAGAATGCGCGAAAGGGCTGCAACTCTTTCCAATGTGAAATTGGAACAAGGAACAGTGACAACACTAATTGAAGAAAAGGGCACCATCAAAGGAGTGATGTACAAGAACAAGGCCGGAGAGGAGATGAGAACATATGCTCCGCTAACAATAGTGTGCGATGGATGCTTTTCAAATCTGCGTCGCTCTATCTCTACTCCGAATATTGAAAACCCGTCCTGCTTCGTCGGGTTGATCTTGGAGAACTGTGAGCTTCCTCATGCAAATCATGGACATGTGATTCTGGGAGATCCTTCACCCATCCTGTTTTATCCTATCAGTAGTACCGAGGTTCGTTGTTTGGTAGATGTTCCCGGCACAAAAGTACCTTCAGTAGCTAATGGCGAAATGGCTCATTATTTGAAAACTGTCGTGGCTCCTCAGGTTCCCCATCAGCTCTTAAAGGCGTTTCTAGCAGCGGTTGATAAAGGAATCATCAGAACAATGCAAAACAAAAGCATGCCGGCTGCTCCTCAGCCCACTCCTGGTGCTATTTTATTGGGGGATGCTTTCAACATGAGACATCCTTTAACTGGAGGAGGAATGACTGTGGCTCTTTCCGACATTGTTCTTCTAAGGGATCTTCTAAGACCCCTAAGTGATTTCAACGATGCACCTGCTTTGTGCGATTATCTCGAATCATTCTACACACTCCGCAAGCCTGTGTCATCTACCATAAACACATTGGCCGGTGCCCTTTACAAGGTGTTCTGTGCATCGCCTGACCCCGCAAGACAGGAAATGCGTGAAGCATGTTTTGACTATTTGAGCCTTGGAGGCATCTGTTCAAATGGACCAATATCTCTACTCTCAGGTCTTAAACCTTGTCCAATCATCCTGTTTCTACATTTCTTTGCTGTGGCTATATATGGAGTCGGCCGCTTAATGTTTCCATTCCCGACGCCCAAACGGATGTGGTTGGGGGCTAGATTAATCTTGAGTGCATCAGGAATCATATTCCCGATTATTAAAGCTGAAGGAGTTAGACAAATGTTCTTTCCTACAACAATGCCAGCATATTACAAAGTTCCTCCTGTTCATAGAAGAATCAAAACAAGCACGAAACATGTATTTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

529

Amino Acids

57.69

Weight (kDa)

8.34

Isoelectric Point (pI)

44.69

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 52 - 363 3.5e-17 FAD binding domain
DAO PF01266 53 - 83 1e-06 FAD dependent oxidoreductase
SE PF08491 204 - 476 3e-118 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1135
Acc36I ACCTGC 1 cut(s) 1135
AccB1I GGYRCC 4 cut(s) 133, 173, 554, 1202
AccII CGCG 1 cut(s) 483
AciI CCGC 5 cut(s) 614, 929, 1165, 1239, 1390
AclWI GGATC 2 cut(s) 755, 1098
AcoI YGGCCR 2 cut(s) 1197, 1387
AcuI CTGAAG 2 cut(s) 825, 1506
AcyI GRCGYC 1 cut(s) 1412
AfaI GTAC 5 cut(s) 154, 231, 575, 796, 837
AfiI CCNNNNNNNGG 3 cut(s) 995, 1043, 1213
AflII CTTAAG 1 cut(s) 250
AflIII ACRYGT 4 cut(s) 226, 232, 745, 1576
AjiI CACGTC 1 cut(s) 227
AjnI CCWGG 2 cut(s) 289, 994
AloI GAACNNNNNNTCC 2 cut(s) 595, 627
AluBI AGCT 5 cut(s) 429, 724, 848, 907, 1484
AluI AGCT 5 cut(s) 429, 724, 848, 907, 1484
Alw26I GTCTC 2 cut(s) 240, 1024
AlwI GGATC 2 cut(s) 755, 1098
AoxI GGCC 3 cut(s) 585, 1197, 1387
ApeKI GCWGC 4 cut(s) 191, 491, 926, 977
AseI ATTAAT 1 cut(s) 1442
AspLEI GCGC 1 cut(s) 483
AspS9I GGNCC 1 cut(s) 1304
AsuC2I CCSGG 1 cut(s) 825
AsuHPI GGTGA 2 cut(s) 287, 759
AvaII GGWCC 1 cut(s) 1304
AxyI CCTNAGG 1 cut(s) 891
BaeGI GKGCMC 2 cut(s) 557, 1207
BaeI ACNNNNGTAYC 2 cut(s) 819, 852
BanI GGYRCC 4 cut(s) 133, 173, 554, 1202
BbvCI CCTCAGC 1 cut(s) 984
BbvI GCAGC 4 cut(s) 178, 478, 938, 964
BccI CCATC 4 cut(s) 566, 626, 779, 909
BcgI CGANNNNNNTGC 6 cut(s) 93, 127, 473, 507, 1109, 1143
BciT130I CCWGG 2 cut(s) 291, 996
BclI TGATCA 1 cut(s) 63
BcnI CCSGG 1 cut(s) 825
BcoDI GTCTC 2 cut(s) 240, 1024
BfaI CTAG 2 cut(s) 923, 1437
BfrI CTTAAG 1 cut(s) 250
BfuAI ACCTGC 1 cut(s) 1135
BglI GCCNNNNNGGC 1 cut(s) 1287
BisI GCNGC 5 cut(s) 192, 492, 927, 978, 1390
BlsI GCNGC 5 cut(s) 193, 493, 928, 979, 1391
Bme1390I CCNGG 3 cut(s) 291, 825, 996
Bme18I GGWCC 1 cut(s) 1304
BmgBI CACGTC 1 cut(s) 227
BmgT120I GGNCC 1 cut(s) 1304
BmiI GGNNCC 6 cut(s) 135, 175, 556, 888, 897, 1204
BmrFI CCNGG 3 cut(s) 291, 825, 996
BmsI GCATC 7 cut(s) 340, 626, 1006, 1111, 1235, 1299, 1463
BplI GAGNNNNNCTC 2 cut(s) 285, 317
BpmI CTGGAG 2 cut(s) 312, 1065
Bpu10I CCTNAGC 1 cut(s) 984
BpuEI CTTGAG 1 cut(s) 1468
BpuMI CCSGG 1 cut(s) 825
BsaHI GRCGYC 1 cut(s) 1412
BsaJI CCNNGG 3 cut(s) 414, 798, 1282
BsaWI WCCGGW 1 cut(s) 136
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 995, 1043, 1213
Bse118I RCCGGY 3 cut(s) 440, 973, 1199
Bse1I ACTGG 1 cut(s) 1048
Bse21I CCTNAGG 1 cut(s) 891
Bse3DI GCAATG 1 cut(s) 397
BseBI CCWGG 2 cut(s) 291, 996
BseDI CCNNGG 3 cut(s) 414, 798, 1282
BseGI GGATG 7 cut(s) 468, 641, 771, 1021, 1033, 1344, 1428
BseLI CCNNNNNNNGG 3 cut(s) 995, 1043, 1213
BseMI GCAATG 1 cut(s) 397
BseMII CTCAG 4 cut(s) 368, 905, 998, 1335
BseNI ACTGG 1 cut(s) 1048
BseRI GAGGAG 4 cut(s) 608, 879, 972, 1062
BseSI GKGCMC 2 cut(s) 557, 1207
BseX3I CGGCCG 1 cut(s) 1387
BseXI GCAGC 4 cut(s) 178, 478, 938, 964
Bsh1236I CGCG 1 cut(s) 483
Bsh1285I CGRYCG 1 cut(s) 1390
BshFI GGCC 3 cut(s) 587, 1199, 1389
BshNI GGYRCC 4 cut(s) 133, 173, 554, 1202
BsiEI CGRYCG 1 cut(s) 1390
BsiSI CCGG 7 cut(s) 137, 177, 441, 588, 825, 974, 1200
BslFI GGGAC 1 cut(s) 110
BslI CCNNNNNNNGG 3 cut(s) 995, 1043, 1213
BsmAI GTCTC 2 cut(s) 240, 1024
BsmFI GGGAC 1 cut(s) 110
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 3 cut(s) 587, 1199, 1389
Bsp1286I GDGCHC 2 cut(s) 557, 1207
Bsp1407I TGTACA 2 cut(s) 229, 573
Bsp143I GATC 4 cut(s) 63, 705, 760, 1090
BspACI CCGC 5 cut(s) 614, 929, 1165, 1239, 1390
BspANI GGCC 3 cut(s) 587, 1199, 1389
BspCNI CTCAG 4 cut(s) 367, 904, 997, 1334
BspFNI CGCG 1 cut(s) 483
BspLI GGNNCC 6 cut(s) 135, 175, 556, 888, 897, 1204
BspMI ACCTGC 1 cut(s) 1135
BspPI GGATC 2 cut(s) 755, 1098
BspT107I GGYRCC 4 cut(s) 133, 173, 554, 1202
BspTI CTTAAG 1 cut(s) 250
BsrDI GCAATG 1 cut(s) 397
BsrFI RCCGGY 3 cut(s) 440, 973, 1199
BsrGI TGTACA 2 cut(s) 229, 573
BsrI ACTGG 1 cut(s) 1048
BssAI RCCGGY 3 cut(s) 440, 973, 1199
BssECI CCNNGG 3 cut(s) 414, 798, 1282
BssMI GATC 4 cut(s) 63, 705, 760, 1090
BssNI GRCGYC 1 cut(s) 1412
BssT1I CCWWGG 2 cut(s) 414, 1282
Bst2UI CCWGG 2 cut(s) 291, 996
Bst4CI ACNGT 5 cut(s) 122, 529, 719, 880, 1060
BstACI GRCGYC 1 cut(s) 1412
BstAFI CTTAAG 1 cut(s) 250
BstAUI TGTACA 2 cut(s) 229, 573
BstC8I GCNNGC 5 cut(s) 442, 971, 975, 1169, 1524
BstDEI CTNAG 7 cut(s) 354, 891, 984, 1085, 1097, 1106, 1321
BstENI CCTNNNNNAGG 1 cut(s) 1211
BstF5I GGATG 7 cut(s) 468, 641, 771, 1021, 1033, 1344, 1428
BstFNI CGCG 1 cut(s) 483
BstHHI GCGC 1 cut(s) 483
BstKTI GATC 4 cut(s) 66, 708, 763, 1093
BstMAI GTCTC 2 cut(s) 240, 1024
BstMBI GATC 4 cut(s) 63, 705, 760, 1090
BstMCI CGRYCG 1 cut(s) 1390
BstMWI GCNNNNNNNGC 6 cut(s) 182, 191, 197, 636, 923, 1287
BstNI CCWGG 2 cut(s) 291, 996
BstNSI RCATGY 5 cut(s) 236, 749, 973, 1266, 1580
BstSCI CCNGG 3 cut(s) 289, 823, 994
BstSLI GKGCMC 2 cut(s) 557, 1207
BstUI CGCG 1 cut(s) 483
BstV1I GCAGC 4 cut(s) 178, 478, 938, 964
BstX2I RGATCY 2 cut(s) 760, 1090
BstYI RGATCY 2 cut(s) 760, 1090
BstZI CGGCCG 1 cut(s) 1387
Bsu36I CCTNAGG 1 cut(s) 891
BsuRI GGCC 3 cut(s) 587, 1199, 1389
BtgZI GCGATG 3 cut(s) 421, 645, 1212
BtrI CACGTC 1 cut(s) 227
BtsCI GGATG 7 cut(s) 468, 641, 771, 1021, 1033, 1344, 1428
BtsIMutI CAGTG 1 cut(s) 534
BveI ACCTGC 1 cut(s) 1135
Cac8I GCNNGC 5 cut(s) 442, 971, 975, 1169, 1524
CfoI GCGC 1 cut(s) 483
Cfr10I RCCGGY 3 cut(s) 440, 973, 1199
Cfr13I GGNCC 1 cut(s) 1304
CseI GACGC 2 cut(s) 641, 1420
Csp6I GTAC 5 cut(s) 153, 230, 574, 795, 836
CviAII CATG 8 cut(s) 233, 731, 740, 746, 970, 1027, 1263, 1577
CviQI GTAC 5 cut(s) 153, 230, 574, 795, 836
DdeI CTNAG 7 cut(s) 354, 891, 984, 1085, 1097, 1106, 1321
DpnI GATC 4 cut(s) 65, 707, 762, 1092
DpnII GATC 4 cut(s) 63, 705, 760, 1090
EaeI YGGCCR 2 cut(s) 1197, 1387
EagI CGGCCG 1 cut(s) 1387
EclXI CGGCCG 1 cut(s) 1387
Eco130I CCWWGG 2 cut(s) 414, 1282
Eco47I GGWCC 1 cut(s) 1304
Eco52I CGGCCG 1 cut(s) 1387
Eco57I CTGAAG 2 cut(s) 825, 1506
Eco81I CCTNAGG 1 cut(s) 891
EcoNI CCTNNNNNAGG 1 cut(s) 1211
EcoRII CCWGG 2 cut(s) 289, 994
EcoT14I CCWWGG 2 cut(s) 414, 1282
ErhI CCWWGG 2 cut(s) 414, 1282
FaeI CATG 8 cut(s) 236, 734, 743, 749, 973, 1030, 1266, 1580
FaqI GGGAC 1 cut(s) 110
FatI CATG 8 cut(s) 232, 730, 739, 745, 969, 1026, 1262, 1576
FauI CCCGC 1 cut(s) 1246
FauNDI CATATG 1 cut(s) 607
FbaI TGATCA 1 cut(s) 63
Fnu4HI GCNGC 5 cut(s) 192, 492, 927, 978, 1390
FokI GGATG 7 cut(s) 455, 648, 758, 1020, 1028, 1331, 1435
Fsp4HI GCNGC 5 cut(s) 192, 492, 927, 978, 1390
FspBI CTAG 2 cut(s) 923, 1437
GlaI GCGC 1 cut(s) 482
GluI GCNGC 5 cut(s) 192, 492, 927, 978, 1390
GsuI CTGGAG 2 cut(s) 312, 1065
HaeIII GGCC 3 cut(s) 587, 1199, 1389
HapII CCGG 7 cut(s) 137, 177, 441, 588, 825, 974, 1200
HgaI GACGC 2 cut(s) 641, 1420
HhaI GCGC 1 cut(s) 483
Hin1I GRCGYC 1 cut(s) 1412
Hin1II CATG 8 cut(s) 236, 734, 743, 749, 973, 1030, 1266, 1580
Hin6I GCGC 1 cut(s) 481
HinP1I GCGC 1 cut(s) 481
HinfI GANTC 7 cut(s) 341, 751, 942, 1148, 1383, 1461, 1557
HpaII CCGG 7 cut(s) 137, 177, 441, 588, 825, 974, 1200
HphI GGTGA 2 cut(s) 287, 759
Hpy166II GTNNAC 3 cut(s) 7, 230, 278
Hpy188I TCNGA 6 cut(s) 115, 357, 433, 672, 950, 1072
Hpy188III TCNNGA 6 cut(s) 323, 1145, 1408, 1447, 1458, 1471
Hpy8I GTNNAC 3 cut(s) 7, 230, 278
Hpy99I CGWCG 5 cut(s) 161, 228, 657, 701, 1414
HpyAV CCTTC 4 cut(s) 212, 774, 849, 1481
HpyCH4III ACNGT 5 cut(s) 122, 529, 719, 880, 1060
HpyCH4IV ACGT 3 cut(s) 99, 159, 226
HpyCH4V TGCA 7 cut(s) 104, 494, 734, 958, 1124, 1226, 1454
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 191, 197, 636, 923, 1287
HpyF3I CTNAG 7 cut(s) 354, 891, 984, 1085, 1097, 1106, 1321
HpySE526I ACGT 3 cut(s) 99, 159, 226
Hsp92I GRCGYC 1 cut(s) 1412
Hsp92II CATG 8 cut(s) 236, 734, 743, 749, 973, 1030, 1266, 1580
HspAI GCGC 1 cut(s) 481
KroI GCCGGC 2 cut(s) 440, 973
KroNI GCCGGC 2 cut(s) 442, 975
Ksp22I TGATCA 1 cut(s) 63
Kzo9I GATC 4 cut(s) 63, 705, 760, 1090
LmnI GCTCC 3 cut(s) 616, 892, 985
Lsp1109I GCAGC 4 cut(s) 178, 478, 938, 964
LweI GCATC 7 cut(s) 340, 626, 1006, 1111, 1235, 1299, 1463
MaeI CTAG 2 cut(s) 923, 1437
MaeII ACGT 3 cut(s) 99, 159, 226
MaeIII GTNAC 1 cut(s) 529
MalI GATC 4 cut(s) 65, 707, 762, 1092
MboI GATC 4 cut(s) 63, 705, 760, 1090
MboII GAAGA 5 cut(s) 338, 557, 1073, 1085, 1566
MfeI CAATTG 1 cut(s) 105
MflI RGATCY 2 cut(s) 760, 1090
MhlI GDGCHC 2 cut(s) 557, 1207
MluCI AATT 6 cut(s) 105, 267, 305, 314, 512, 540
MlyI GAGTC 2 cut(s) 350, 1392
MmeI TCCRAC 2 cut(s) 93, 1095
MroNI GCCGGC 2 cut(s) 440, 973
MseI TTAA 8 cut(s) 251, 911, 1040, 1329, 1394, 1442, 1479, 1585
MslI CAYNNNNRTG 1 cut(s) 744
MspA1I CMGCKG 1 cut(s) 929
MspCI CTTAAG 1 cut(s) 250
MspI CCGG 7 cut(s) 137, 177, 441, 588, 825, 974, 1200
MspR9I CCNGG 3 cut(s) 291, 825, 996
MunI CAATTG 1 cut(s) 105
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 2 cut(s) 291, 996
MvnI CGCG 1 cut(s) 483
MwoI GCNNNNNNNGC 6 cut(s) 182, 191, 197, 636, 923, 1287
NaeI GCCGGC 2 cut(s) 442, 975
NciI CCSGG 1 cut(s) 825
NdeI CATATG 1 cut(s) 607
NdeII GATC 4 cut(s) 63, 705, 760, 1090
NgoMIV GCCGGC 2 cut(s) 440, 973
NlaIII CATG 8 cut(s) 236, 734, 743, 749, 973, 1030, 1266, 1580
NlaIV GGNNCC 6 cut(s) 135, 175, 556, 888, 897, 1204
NmuCI GTSAC 1 cut(s) 529
NspI RCATGY 5 cut(s) 236, 749, 973, 1266, 1580
PaeI GCATGC 1 cut(s) 973
PaqCI CACCTGC 1 cut(s) 1135
PciI ACATGT 3 cut(s) 232, 745, 1576
PctI GAATGC 1 cut(s) 483
PdiI GCCGGC 2 cut(s) 442, 975
PfeI GAWTC 5 cut(s) 751, 942, 1148, 1461, 1557
PflFI GACNNNGTC 1 cut(s) 161
PkrI GCNGC 5 cut(s) 193, 493, 928, 979, 1391
PleI GAGTC 2 cut(s) 349, 1391
PpsI GAGTC 2 cut(s) 349, 1391
PscI ACATGT 3 cut(s) 232, 745, 1576
PshBI ATTAAT 1 cut(s) 1442
Psp6I CCWGG 2 cut(s) 289, 994
PspGI CCWGG 2 cut(s) 289, 994
PspN4I GGNNCC 6 cut(s) 135, 175, 556, 888, 897, 1204
PspPI GGNCC 1 cut(s) 1304
PsuI RGATCY 2 cut(s) 760, 1090
PsyI GACNNNGTC 1 cut(s) 161
RsaI GTAC 5 cut(s) 154, 231, 575, 796, 837
RsaNI GTAC 5 cut(s) 153, 230, 574, 795, 836
RseI CAYNNNNRTG 1 cut(s) 744
SaqAI TTAA 8 cut(s) 251, 911, 1040, 1329, 1394, 1442, 1479, 1585
SatI GCNGC 5 cut(s) 192, 492, 927, 978, 1390
Sau3AI GATC 4 cut(s) 63, 705, 760, 1090
Sau96I GGNCC 1 cut(s) 1304
SchI GAGTC 2 cut(s) 350, 1392
ScrFI CCNGG 3 cut(s) 291, 825, 996
SduI GDGCHC 2 cut(s) 557, 1207
SfaNI GCATC 7 cut(s) 340, 626, 1006, 1111, 1235, 1299, 1463
SinI GGWCC 1 cut(s) 1304
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 2 cut(s) 250, 1447
SmoI CTYRAG 2 cut(s) 250, 1447
SphI GCATGC 1 cut(s) 973
Sse9I AATT 6 cut(s) 105, 267, 305, 314, 512, 540
SsiI CCGC 5 cut(s) 614, 929, 1165, 1239, 1390
SspI AATATT 1 cut(s) 676
SspMI CTAG 2 cut(s) 923, 1437
StyD4I CCNGG 3 cut(s) 289, 823, 994
StyI CCWWGG 2 cut(s) 414, 1282
TaaI ACNGT 5 cut(s) 122, 529, 719, 880, 1060
TaiI ACGT 3 cut(s) 102, 162, 229
TaqI TCGA 1 cut(s) 1146
TasI AATT 6 cut(s) 105, 267, 305, 314, 512, 540
TatI WGTACW 2 cut(s) 229, 573
TauI GCSGC 1 cut(s) 1392
TfiI GAWTC 5 cut(s) 751, 942, 1148, 1461, 1557
Tru1I TTAA 8 cut(s) 251, 911, 1040, 1329, 1394, 1442, 1479, 1585
Tru9I TTAA 8 cut(s) 251, 911, 1040, 1329, 1394, 1442, 1479, 1585
TscAI CASTG 1 cut(s) 534
TseFI GTSAC 1 cut(s) 529
TseI GCWGC 4 cut(s) 191, 491, 926, 977
Tsp45I GTSAC 1 cut(s) 529
TspDTI ATGAA 2 cut(s) 457, 1538
TspGWI ACGGA 1 cut(s) 1435
TspRI CASTG 1 cut(s) 534
Tth111I GACNNNGTC 1 cut(s) 161
Vha464I CTTAAG 1 cut(s) 250
VpaK11BI GGWCC 1 cut(s) 1304
VspI ATTAAT 1 cut(s) 1442
XagI CCTNNNNNAGG 1 cut(s) 1211
XceI RCATGY 5 cut(s) 236, 749, 973, 1266, 1580
XcmI CCANNNNNNNNNTGG 2 cut(s) 511, 1192
XspI CTAG 2 cut(s) 923, 1437
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.