squalene
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 1001 |
| AarI | CACCTGC | 2 cut(s) | 658, 713 |
| Acc16I | TGCGCA | 2 cut(s) | 176, 689 |
| Acc36I | ACCTGC | 2 cut(s) | 658, 713 |
| AccI | GTMKAC | 1 cut(s) | 704 |
| AccII | CGCG | 1 cut(s) | 6 |
| AciI | CCGC | 1 cut(s) | 913 |
| AclWI | GGATC | 1 cut(s) | 55 |
| AcoI | YGGCCR | 1 cut(s) | 910 |
| AcuI | CTGAAG | 1 cut(s) | 348 |
| AfaI | GTAC | 4 cut(s) | 345, 360, 734, 1044 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 368, 518, 566 |
| AflIII | ACRYGT | 1 cut(s) | 268 |
| AgsI | TTSAA | 6 cut(s) | 27, 168, 203, 397, 547, 671 |
| AjnI | CCWGG | 2 cut(s) | 346, 517 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 774, 806 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 118, 150 |
| AluBI | AGCT | 2 cut(s) | 14, 804 |
| AluI | AGCT | 2 cut(s) | 14, 804 |
| Alw21I | GWGCWC | 1 cut(s) | 193 |
| Alw26I | GTCTC | 2 cut(s) | 186, 276 |
| Alw44I | GTGCAC | 1 cut(s) | 189 |
| AlwI | GGATC | 1 cut(s) | 55 |
| AoxI | GGCC | 2 cut(s) | 910, 1019 |
| ApaLI | GTGCAC | 1 cut(s) | 189 |
| ApeKI | GCWGC | 3 cut(s) | 449, 497, 761 |
| AspLEI | GCGC | 3 cut(s) | 6, 177, 690 |
| AspS9I | GGNCC | 1 cut(s) | 827 |
| AsuHPI | GGTGA | 6 cut(s) | 103, 282, 389, 744, 927, 1019 |
| AvaII | GGWCC | 1 cut(s) | 827 |
| BaeGI | GKGCMC | 1 cut(s) | 193 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 342, 375 |
| Bbv12I | GWGCWC | 1 cut(s) | 193 |
| BbvI | GCAGC | 3 cut(s) | 436, 484, 773 |
| BccI | CCATC | 3 cut(s) | 149, 302, 905 |
| BciT130I | CCWGG | 2 cut(s) | 348, 519 |
| BcoDI | GTCTC | 2 cut(s) | 186, 276 |
| BfmI | CTRYAG | 1 cut(s) | 450 |
| BfuAI | ACCTGC | 2 cut(s) | 658, 713 |
| BglII | AGATCT | 1 cut(s) | 1058 |
| BisI | GCNGC | 4 cut(s) | 450, 498, 762, 913 |
| BlsI | GCNGC | 4 cut(s) | 451, 499, 763, 914 |
| Bme1390I | CCNGG | 2 cut(s) | 348, 519 |
| Bme18I | GGWCC | 1 cut(s) | 827 |
| BmgT120I | GGNCC | 1 cut(s) | 827 |
| BmiI | GGNNCC | 1 cut(s) | 411 |
| BmrFI | CCNGG | 2 cut(s) | 348, 519 |
| BmsI | GCATC | 8 cut(s) | 529, 565, 634, 748, 758, 822, 986, 993 |
| BpmI | CTGGAG | 1 cut(s) | 132 |
| BpuEI | CTTGAG | 1 cut(s) | 991 |
| BsaI | GGTCTC | 1 cut(s) | 276 |
| BsaJI | CCNNGG | 2 cut(s) | 321, 402 |
| BsaWI | WCCGGW | 1 cut(s) | 754 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 118, 148 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 368, 518, 566 |
| Bse1I | ACTGG | 1 cut(s) | 830 |
| Bse3DI | GCAATG | 1 cut(s) | 863 |
| BseBI | CCWGG | 2 cut(s) | 348, 519 |
| BseDI | CCNNGG | 2 cut(s) | 321, 402 |
| BseGI | GGATG | 5 cut(s) | 294, 346, 544, 556, 763 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 368, 518, 566 |
| BseMI | GCAATG | 1 cut(s) | 863 |
| BseMII | CTCAG | 2 cut(s) | 199, 428 |
| BseNI | ACTGG | 1 cut(s) | 830 |
| BseRI | GAGGAG | 4 cut(s) | 131, 402, 585, 1053 |
| BseSI | GKGCMC | 1 cut(s) | 193 |
| BseX3I | CGGCCG | 1 cut(s) | 910 |
| BseXI | GCAGC | 3 cut(s) | 436, 484, 773 |
| Bsh1236I | CGCG | 1 cut(s) | 6 |
| Bsh1285I | CGRYCG | 1 cut(s) | 913 |
| BshFI | GGCC | 2 cut(s) | 912, 1021 |
| BsiEI | CGRYCG | 1 cut(s) | 913 |
| BsiHKAI | GWGCWC | 1 cut(s) | 193 |
| BsiSI | CCGG | 1 cut(s) | 755 |
| BslFI | GGGAC | 2 cut(s) | 192, 494 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 368, 518, 566 |
| BsmAI | GTCTC | 2 cut(s) | 186, 276 |
| BsmFI | GGGAC | 2 cut(s) | 192, 494 |
| BsmI | GAATGC | 1 cut(s) | 542 |
| BsnI | GGCC | 2 cut(s) | 912, 1021 |
| Bso31I | GGTCTC | 1 cut(s) | 276 |
| Bsp1286I | GDGCHC | 1 cut(s) | 193 |
| Bsp1407I | TGTACA | 1 cut(s) | 732 |
| Bsp143I | GATC | 6 cut(s) | 47, 228, 613, 634, 966, 1058 |
| BspACI | CCGC | 1 cut(s) | 913 |
| BspANI | GGCC | 2 cut(s) | 912, 1021 |
| BspCNI | CTCAG | 2 cut(s) | 198, 427 |
| BspFNI | CGCG | 1 cut(s) | 6 |
| BspLI | GGNNCC | 1 cut(s) | 411 |
| BspMAI | CTGCAG | 1 cut(s) | 454 |
| BspMI | ACCTGC | 2 cut(s) | 658, 713 |
| BspPI | GGATC | 1 cut(s) | 55 |
| BspTNI | GGTCTC | 1 cut(s) | 276 |
| BsrDI | GCAATG | 1 cut(s) | 863 |
| BsrGI | TGTACA | 1 cut(s) | 732 |
| BsrI | ACTGG | 1 cut(s) | 830 |
| BssECI | CCNNGG | 2 cut(s) | 321, 402 |
| BssMI | GATC | 6 cut(s) | 47, 228, 613, 634, 966, 1058 |
| Bst2UI | CCWGG | 2 cut(s) | 348, 519 |
| Bst4CI | ACNGT | 5 cut(s) | 242, 403, 429, 583, 1042 |
| Bst6I | CTCTTC | 1 cut(s) | 843 |
| BstAUI | TGTACA | 1 cut(s) | 732 |
| BstC8I | GCNNGC | 2 cut(s) | 692, 787 |
| BstDEI | CTNAG | 3 cut(s) | 185, 414, 620 |
| BstDSI | CCRYGG | 1 cut(s) | 402 |
| BstENI | CCTNNNNNAGG | 2 cut(s) | 366, 564 |
| BstF5I | GGATG | 5 cut(s) | 294, 346, 544, 556, 763 |
| BstFNI | CGCG | 1 cut(s) | 6 |
| BstHHI | GCGC | 3 cut(s) | 6, 177, 690 |
| BstKTI | GATC | 6 cut(s) | 50, 231, 616, 637, 969, 1061 |
| BstMAI | GTCTC | 2 cut(s) | 186, 276 |
| BstMBI | GATC | 6 cut(s) | 47, 228, 613, 634, 966, 1058 |
| BstMCI | CGRYCG | 1 cut(s) | 913 |
| BstMWI | GCNNNNNNNGC | 3 cut(s) | 446, 801, 810 |
| BstNI | CCWGG | 2 cut(s) | 348, 519 |
| BstNSI | RCATGY | 4 cut(s) | 257, 272, 789, 949 |
| BstSCI | CCNGG | 2 cut(s) | 346, 517 |
| BstSFI | CTRYAG | 1 cut(s) | 450 |
| BstSLI | GKGCMC | 1 cut(s) | 193 |
| BstUI | CGCG | 1 cut(s) | 6 |
| BstV1I | GCAGC | 3 cut(s) | 436, 484, 773 |
| BstX2I | RGATCY | 1 cut(s) | 1058 |
| BstYI | RGATCY | 1 cut(s) | 1058 |
| BstZI | CGGCCG | 1 cut(s) | 910 |
| BsuRI | GGCC | 2 cut(s) | 912, 1021 |
| BtgI | CCRYGG | 1 cut(s) | 402 |
| BtsCI | GGATG | 5 cut(s) | 294, 346, 544, 556, 763 |
| BtsI | GCAGTG | 1 cut(s) | 683 |
| BtsIMutI | CAGTG | 3 cut(s) | 57, 193, 683 |
| BveI | ACCTGC | 2 cut(s) | 658, 713 |
| Cac8I | GCNNGC | 2 cut(s) | 692, 787 |
| CfoI | GCGC | 3 cut(s) | 6, 177, 690 |
| Cfr13I | GGNCC | 1 cut(s) | 827 |
| Csp6I | GTAC | 4 cut(s) | 344, 359, 733, 1043 |
| CviAII | CATG | 8 cut(s) | 254, 263, 269, 493, 550, 632, 786, 946 |
| CviQI | GTAC | 4 cut(s) | 344, 359, 733, 1043 |
| DdeI | CTNAG | 3 cut(s) | 185, 414, 620 |
| DpnI | GATC | 6 cut(s) | 49, 230, 615, 636, 968, 1060 |
| DpnII | GATC | 6 cut(s) | 47, 228, 613, 634, 966, 1058 |
| EaeI | YGGCCR | 1 cut(s) | 910 |
| EagI | CGGCCG | 1 cut(s) | 910 |
| Eam1104I | CTCTTC | 1 cut(s) | 843 |
| EarI | CTCTTC | 1 cut(s) | 843 |
| EclXI | CGGCCG | 1 cut(s) | 910 |
| Eco31I | GGTCTC | 1 cut(s) | 276 |
| Eco47I | GGWCC | 1 cut(s) | 827 |
| Eco52I | CGGCCG | 1 cut(s) | 910 |
| Eco57I | CTGAAG | 1 cut(s) | 348 |
| EcoNI | CCTNNNNNAGG | 2 cut(s) | 366, 564 |
| EcoRII | CCWGG | 2 cut(s) | 346, 517 |
| EcoT22I | ATGCAT | 1 cut(s) | 544 |
| FaeI | CATG | 8 cut(s) | 257, 266, 272, 496, 553, 635, 789, 949 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 196, 228 |
| FaqI | GGGAC | 2 cut(s) | 192, 494 |
| FatI | CATG | 8 cut(s) | 253, 262, 268, 492, 549, 631, 785, 945 |
| FauNDI | CATATG | 2 cut(s) | 130, 823 |
| FblI | GTMKAC | 1 cut(s) | 704 |
| Fnu4HI | GCNGC | 4 cut(s) | 450, 498, 762, 913 |
| FokI | GGATG | 5 cut(s) | 281, 353, 543, 551, 770 |
| Fsp4HI | GCNGC | 4 cut(s) | 450, 498, 762, 913 |
| FspI | TGCGCA | 2 cut(s) | 176, 689 |
| GlaI | GCGC | 3 cut(s) | 5, 176, 689 |
| GluI | GCNGC | 4 cut(s) | 450, 498, 762, 913 |
| GsuI | CTGGAG | 1 cut(s) | 132 |
| HaeIII | GGCC | 2 cut(s) | 912, 1021 |
| HapII | CCGG | 1 cut(s) | 755 |
| HhaI | GCGC | 3 cut(s) | 6, 177, 690 |
| Hin1II | CATG | 8 cut(s) | 257, 266, 272, 496, 553, 635, 789, 949 |
| Hin6I | GCGC | 3 cut(s) | 4, 175, 688 |
| HinP1I | GCGC | 3 cut(s) | 4, 175, 688 |
| HinfI | GANTC | 4 cut(s) | 19, 418, 671, 958 |
| HpaII | CCGG | 1 cut(s) | 755 |
| HphI | GGTGA | 6 cut(s) | 103, 282, 389, 744, 927, 1019 |
| Hpy166II | GTNNAC | 2 cut(s) | 191, 705 |
| Hpy188I | TCNGA | 3 cut(s) | 417, 473, 595 |
| Hpy188III | TCNNGA | 1 cut(s) | 970 |
| Hpy8I | GTNNAC | 2 cut(s) | 191, 705 |
| HpyAV | CCTTC | 6 cut(s) | 257, 297, 372, 454, 942, 1004 |
| HpyCH4III | ACNGT | 5 cut(s) | 242, 403, 429, 583, 1042 |
| HpyF10VI | GCNNNNNNNGC | 3 cut(s) | 446, 801, 810 |
| HpyF3I | CTNAG | 3 cut(s) | 185, 414, 620 |
| Hsp92II | CATG | 8 cut(s) | 257, 266, 272, 496, 553, 635, 789, 949 |
| HspAI | GCGC | 3 cut(s) | 4, 175, 688 |
| Kzo9I | GATC | 6 cut(s) | 47, 228, 613, 634, 966, 1058 |
| LmnI | GCTCC | 2 cut(s) | 139, 415 |
| Lsp1109I | GCAGC | 3 cut(s) | 436, 484, 773 |
| LweI | GCATC | 8 cut(s) | 529, 565, 634, 748, 758, 822, 986, 993 |
| MaeIII | GTNAC | 2 cut(s) | 52, 242 |
| MalI | GATC | 6 cut(s) | 49, 230, 615, 636, 968, 1060 |
| MboI | GATC | 6 cut(s) | 47, 228, 613, 634, 966, 1058 |
| MboII | GAAGA | 3 cut(s) | 596, 608, 830 |
| MflI | RGATCY | 1 cut(s) | 1058 |
| MhlI | GDGCHC | 1 cut(s) | 193 |
| MluCI | AATT | 1 cut(s) | 661 |
| MlyI | GAGTC | 1 cut(s) | 13 |
| Mph1103I | ATGCAT | 1 cut(s) | 544 |
| MseI | TTAA | 4 cut(s) | 563, 852, 917, 1075 |
| MslI | CAYNNNNRTG | 1 cut(s) | 267 |
| MspI | CCGG | 1 cut(s) | 755 |
| MspR9I | CCNGG | 2 cut(s) | 348, 519 |
| Mva1269I | GAATGC | 1 cut(s) | 542 |
| MvaI | CCWGG | 2 cut(s) | 348, 519 |
| MvnI | CGCG | 1 cut(s) | 6 |
| MwoI | GCNNNNNNNGC | 3 cut(s) | 446, 801, 810 |
| NdeI | CATATG | 2 cut(s) | 130, 823 |
| NdeII | GATC | 6 cut(s) | 47, 228, 613, 634, 966, 1058 |
| NlaIII | CATG | 8 cut(s) | 257, 266, 272, 496, 553, 635, 789, 949 |
| NlaIV | GGNNCC | 1 cut(s) | 411 |
| NmuCI | GTSAC | 2 cut(s) | 52, 242 |
| NsbI | TGCGCA | 2 cut(s) | 176, 689 |
| NsiI | ATGCAT | 1 cut(s) | 544 |
| NspI | RCATGY | 4 cut(s) | 257, 272, 789, 949 |
| PaeI | GCATGC | 1 cut(s) | 789 |
| PaqCI | CACCTGC | 2 cut(s) | 658, 713 |
| PciI | ACATGT | 1 cut(s) | 268 |
| PctI | GAATGC | 1 cut(s) | 542 |
| PfeI | GAWTC | 3 cut(s) | 418, 671, 958 |
| PkrI | GCNGC | 4 cut(s) | 451, 499, 763, 914 |
| PleI | GAGTC | 1 cut(s) | 13 |
| PpsI | GAGTC | 1 cut(s) | 13 |
| PscI | ACATGT | 1 cut(s) | 268 |
| PsiI | TTATAA | 1 cut(s) | 1001 |
| Psp6I | CCWGG | 2 cut(s) | 346, 517 |
| PspGI | CCWGG | 2 cut(s) | 346, 517 |
| PspN4I | GGNNCC | 1 cut(s) | 411 |
| PspPI | GGNCC | 1 cut(s) | 827 |
| PstI | CTGCAG | 1 cut(s) | 454 |
| PsuI | RGATCY | 1 cut(s) | 1058 |
| RsaI | GTAC | 4 cut(s) | 345, 360, 734, 1044 |
| RsaNI | GTAC | 4 cut(s) | 344, 359, 733, 1043 |
| RseI | CAYNNNNRTG | 1 cut(s) | 267 |
| SaqAI | TTAA | 4 cut(s) | 563, 852, 917, 1075 |
| SatI | GCNGC | 4 cut(s) | 450, 498, 762, 913 |
| Sau3AI | GATC | 6 cut(s) | 47, 228, 613, 634, 966, 1058 |
| Sau96I | GGNCC | 1 cut(s) | 827 |
| SchI | GAGTC | 1 cut(s) | 13 |
| ScrFI | CCNGG | 2 cut(s) | 348, 519 |
| SduI | GDGCHC | 1 cut(s) | 193 |
| SfaNI | GCATC | 8 cut(s) | 529, 565, 634, 748, 758, 822, 986, 993 |
| SfcI | CTRYAG | 1 cut(s) | 450 |
| SinI | GGWCC | 1 cut(s) | 827 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 267 |
| SmlI | CTYRAG | 1 cut(s) | 970 |
| SmoI | CTYRAG | 1 cut(s) | 970 |
| SphI | GCATGC | 1 cut(s) | 789 |
| Sse9I | AATT | 1 cut(s) | 661 |
| SsiI | CCGC | 1 cut(s) | 913 |
| StyD4I | CCNGG | 2 cut(s) | 346, 517 |
| TaaI | ACNGT | 5 cut(s) | 242, 403, 429, 583, 1042 |
| TaqI | TCGA | 2 cut(s) | 66, 961 |
| TasI | AATT | 1 cut(s) | 661 |
| TatI | WGTACW | 1 cut(s) | 732 |
| TauI | GCSGC | 1 cut(s) | 915 |
| TfiI | GAWTC | 3 cut(s) | 418, 671, 958 |
| Tru1I | TTAA | 4 cut(s) | 563, 852, 917, 1075 |
| Tru9I | TTAA | 4 cut(s) | 563, 852, 917, 1075 |
| TscAI | CASTG | 3 cut(s) | 57, 193, 690 |
| TseFI | GTSAC | 2 cut(s) | 52, 242 |
| TseI | GCWGC | 3 cut(s) | 449, 497, 761 |
| Tsp45I | GTSAC | 2 cut(s) | 52, 242 |
| TspDTI | ATGAA | 2 cut(s) | 810, 1061 |
| TspGWI | ACGGA | 2 cut(s) | 599, 915 |
| TspRI | CASTG | 3 cut(s) | 57, 193, 690 |
| VneI | GTGCAC | 1 cut(s) | 189 |
| VpaK11BI | GGWCC | 1 cut(s) | 827 |
| XagI | CCTNNNNNAGG | 2 cut(s) | 366, 564 |
| XceI | RCATGY | 4 cut(s) | 257, 272, 789, 949 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 715 |
| XmiI | GTMKAC | 1 cut(s) | 704 |
| Zsp2I | ATGCAT | 1 cut(s) | 544 |