squalene
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SE | PF08491 | 2 - 129 | 1.6e-46 | Squalene epoxidase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 2 cut(s) | 214, 269 |
| Acc36I | ACCTGC | 2 cut(s) | 214, 269 |
| AciI | CCGC | 2 cut(s) | 6, 471 |
| AcoI | YGGCCR | 2 cut(s) | 3, 468 |
| AfaI | GTAC | 1 cut(s) | 290 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 74, 122 |
| AgsI | TTSAA | 1 cut(s) | 227 |
| AjnI | CCWGG | 1 cut(s) | 73 |
| Alw26I | GTCTC | 1 cut(s) | 103 |
| AoxI | GGCC | 2 cut(s) | 3, 468 |
| ApeKI | GCWGC | 1 cut(s) | 53 |
| AspS9I | GGNCC | 1 cut(s) | 383 |
| AsuHPI | GGTGA | 1 cut(s) | 300 |
| AvaII | GGWCC | 1 cut(s) | 383 |
| BbvI | GCAGC | 1 cut(s) | 40 |
| BceAI | ACGGC | 1 cut(s) | 439 |
| BciT130I | CCWGG | 1 cut(s) | 75 |
| BcoDI | GTCTC | 1 cut(s) | 103 |
| BfuAI | ACCTGC | 2 cut(s) | 214, 269 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 366 |
| BisI | GCNGC | 3 cut(s) | 6, 54, 471 |
| BlsI | GCNGC | 3 cut(s) | 7, 55, 472 |
| Bme1390I | CCNGG | 1 cut(s) | 75 |
| Bme18I | GGWCC | 1 cut(s) | 383 |
| BmgT120I | GGNCC | 1 cut(s) | 383 |
| BmrFI | CCNGG | 1 cut(s) | 75 |
| BmsI | GCATC | 3 cut(s) | 190, 314, 378 |
| BpmI | CTGGAG | 1 cut(s) | 144 |
| BsaAI | YACGTR | 1 cut(s) | 188 |
| BsaJI | CCNNGG | 1 cut(s) | 361 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 74, 122 |
| Bse1I | ACTGG | 1 cut(s) | 127 |
| BseBI | CCWGG | 1 cut(s) | 75 |
| BseDI | CCNNGG | 1 cut(s) | 361 |
| BseGI | GGATG | 3 cut(s) | 112, 257, 417 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 74, 122 |
| BseNI | ACTGG | 1 cut(s) | 127 |
| BseRI | GAGGAG | 1 cut(s) | 141 |
| BseXI | GCAGC | 1 cut(s) | 40 |
| BseYI | CCCAGC | 1 cut(s) | 316 |
| BshFI | GGCC | 2 cut(s) | 5, 470 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 74, 122 |
| BsmAI | GTCTC | 1 cut(s) | 103 |
| BsnI | GGCC | 2 cut(s) | 5, 470 |
| Bsp1407I | TGTACA | 1 cut(s) | 288 |
| Bsp143I | GATC | 2 cut(s) | 169, 190 |
| BspACI | CCGC | 2 cut(s) | 6, 471 |
| BspANI | GGCC | 2 cut(s) | 5, 470 |
| BspMI | ACCTGC | 2 cut(s) | 214, 269 |
| BsrGI | TGTACA | 1 cut(s) | 288 |
| BsrI | ACTGG | 1 cut(s) | 127 |
| BssECI | CCNNGG | 1 cut(s) | 361 |
| BssMI | GATC | 2 cut(s) | 169, 190 |
| BssT1I | CCWWGG | 1 cut(s) | 361 |
| Bst2UI | CCWGG | 1 cut(s) | 75 |
| Bst4CI | ACNGT | 2 cut(s) | 139, 243 |
| Bst6I | CTCTTC | 1 cut(s) | 69 |
| BstAUI | TGTACA | 1 cut(s) | 288 |
| BstBAI | YACGTR | 1 cut(s) | 188 |
| BstDEI | CTNAG | 1 cut(s) | 176 |
| BstF5I | GGATG | 3 cut(s) | 112, 257, 417 |
| BstKTI | GATC | 2 cut(s) | 172, 193 |
| BstMAI | GTCTC | 1 cut(s) | 103 |
| BstMBI | GATC | 2 cut(s) | 169, 190 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 357, 366 |
| BstNI | CCWGG | 1 cut(s) | 75 |
| BstNSI | RCATGY | 1 cut(s) | 345 |
| BstSCI | CCNGG | 1 cut(s) | 73 |
| BstV1I | GCAGC | 1 cut(s) | 40 |
| BsuRI | GGCC | 2 cut(s) | 5, 470 |
| BtsCI | GGATG | 3 cut(s) | 112, 257, 417 |
| BtsIMutI | CAGTG | 1 cut(s) | 239 |
| BveI | ACCTGC | 2 cut(s) | 214, 269 |
| Cfr13I | GGNCC | 1 cut(s) | 383 |
| Csp6I | GTAC | 1 cut(s) | 289 |
| CspCI | CAANNNNNGTGG | 2 cut(s) | 410, 445 |
| CviAII | CATG | 4 cut(s) | 34, 49, 106, 342 |
| CviJI | RGCY | 7 cut(s) | 5, 53, 143, 250, 351, 360, 470 |
| CviKI_1 | RGCY | 7 cut(s) | 5, 53, 143, 250, 351, 360, 470 |
| CviQI | GTAC | 1 cut(s) | 289 |
| DdeI | CTNAG | 1 cut(s) | 176 |
| DpnI | GATC | 2 cut(s) | 171, 192 |
| DpnII | GATC | 2 cut(s) | 169, 190 |
| EaeI | YGGCCR | 2 cut(s) | 3, 468 |
| Eam1104I | CTCTTC | 1 cut(s) | 69 |
| EarI | CTCTTC | 1 cut(s) | 69 |
| Eco130I | CCWWGG | 1 cut(s) | 361 |
| Eco47I | GGWCC | 1 cut(s) | 383 |
| EcoRII | CCWGG | 1 cut(s) | 73 |
| EcoT14I | CCWWGG | 1 cut(s) | 361 |
| ErhI | CCWWGG | 1 cut(s) | 361 |
| FaeI | CATG | 4 cut(s) | 37, 52, 109, 345 |
| FatI | CATG | 4 cut(s) | 33, 48, 105, 341 |
| FauNDI | CATATG | 1 cut(s) | 379 |
| Fnu4HI | GCNGC | 3 cut(s) | 6, 54, 471 |
| FokI | GGATG | 3 cut(s) | 99, 244, 404 |
| Fsp4HI | GCNGC | 3 cut(s) | 6, 54, 471 |
| GluI | GCNGC | 3 cut(s) | 6, 54, 471 |
| GsaI | CCCAGC | 1 cut(s) | 320 |
| GsuI | CTGGAG | 1 cut(s) | 144 |
| HaeIII | GGCC | 2 cut(s) | 5, 470 |
| Hin1II | CATG | 4 cut(s) | 37, 52, 109, 345 |
| HincII | GTYRAC | 1 cut(s) | 13 |
| HindII | GTYRAC | 1 cut(s) | 13 |
| HinfI | GANTC | 1 cut(s) | 227 |
| HphI | GGTGA | 1 cut(s) | 300 |
| Hpy166II | GTNNAC | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 1 cut(s) | 151 |
| Hpy8I | GTNNAC | 1 cut(s) | 13 |
| HpyAV | CCTTC | 1 cut(s) | 406 |
| HpyCH4III | ACNGT | 2 cut(s) | 139, 243 |
| HpyCH4IV | ACGT | 1 cut(s) | 187 |
| HpyCH4V | TGCA | 4 cut(s) | 37, 80, 203, 305 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 357, 366 |
| HpyF3I | CTNAG | 1 cut(s) | 176 |
| HpySE526I | ACGT | 1 cut(s) | 187 |
| Hsp92II | CATG | 4 cut(s) | 37, 52, 109, 345 |
| Kzo9I | GATC | 2 cut(s) | 169, 190 |
| LpnPI | CCDG | 9 cut(s) | 60, 87, 108, 219, 264, 264, 324, 330, 389 |
| Lsp1109I | GCAGC | 1 cut(s) | 40 |
| LweI | GCATC | 3 cut(s) | 190, 314, 378 |
| MaeII | ACGT | 1 cut(s) | 187 |
| MalI | GATC | 2 cut(s) | 171, 192 |
| MboI | GATC | 2 cut(s) | 169, 190 |
| MboII | GAAGA | 3 cut(s) | 56, 152, 164 |
| MluCI | AATT | 3 cut(s) | 81, 94, 217 |
| MnlI | CCTC | 5 cut(s) | 72, 119, 122, 359, 425 |
| MseI | TTAA | 3 cut(s) | 119, 410, 475 |
| MspA1I | CMGCKG | 1 cut(s) | 8 |
| MspR9I | CCNGG | 1 cut(s) | 75 |
| MvaI | CCWGG | 1 cut(s) | 75 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 357, 366 |
| NdeI | CATATG | 1 cut(s) | 379 |
| NdeII | GATC | 2 cut(s) | 169, 190 |
| NlaIII | CATG | 4 cut(s) | 37, 52, 109, 345 |
| NspI | RCATGY | 1 cut(s) | 345 |
| PaqCI | CACCTGC | 2 cut(s) | 214, 269 |
| PfeI | GAWTC | 1 cut(s) | 227 |
| PkrI | GCNGC | 3 cut(s) | 7, 55, 472 |
| Ppu21I | YACGTR | 1 cut(s) | 188 |
| Psp6I | CCWGG | 1 cut(s) | 73 |
| PspFI | CCCAGC | 1 cut(s) | 316 |
| PspGI | CCWGG | 1 cut(s) | 73 |
| PspPI | GGNCC | 1 cut(s) | 383 |
| RsaI | GTAC | 1 cut(s) | 290 |
| RsaNI | GTAC | 1 cut(s) | 289 |
| SaqAI | TTAA | 3 cut(s) | 119, 410, 475 |
| SatI | GCNGC | 3 cut(s) | 6, 54, 471 |
| Sau3AI | GATC | 2 cut(s) | 169, 190 |
| Sau96I | GGNCC | 1 cut(s) | 383 |
| ScrFI | CCNGG | 1 cut(s) | 75 |
| SetI | ASST | 6 cut(s) | 133, 190, 208, 225, 283, 297 |
| SfaNI | GCATC | 3 cut(s) | 190, 314, 378 |
| SinI | GGWCC | 1 cut(s) | 383 |
| Sse9I | AATT | 3 cut(s) | 81, 94, 217 |
| SsiI | CCGC | 2 cut(s) | 6, 471 |
| StyD4I | CCNGG | 1 cut(s) | 73 |
| StyI | CCWWGG | 1 cut(s) | 361 |
| TaaI | ACNGT | 2 cut(s) | 139, 243 |
| TaiI | ACGT | 1 cut(s) | 190 |
| TasI | AATT | 3 cut(s) | 81, 94, 217 |
| TatI | WGTACW | 1 cut(s) | 288 |
| TauI | GCSGC | 2 cut(s) | 8, 473 |
| TfiI | GAWTC | 1 cut(s) | 227 |
| Tru1I | TTAA | 3 cut(s) | 119, 410, 475 |
| Tru9I | TTAA | 3 cut(s) | 119, 410, 475 |
| TscAI | CASTG | 1 cut(s) | 246 |
| TseI | GCWGC | 1 cut(s) | 53 |
| TspDTI | ATGAA | 1 cut(s) | 366 |
| TspRI | CASTG | 1 cut(s) | 246 |
| VpaK11BI | GGWCC | 1 cut(s) | 383 |
| XceI | RCATGY | 1 cut(s) | 345 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 271 |