Rmu_sc0031581.1_g000001

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0031581.1
OG0000108
Physical Location & Seq
Forward (+)
101 .. 1202
1102 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0031581.1_g000001.1.cds

Sequence Viewer

Length: 531 bp
atggtttcttacgagtatgttctcggtggaatgttagtttctttgctgggctctgttttcttcatgatcatcagttctactttgggaggaaagaaacaattcaaggtttcaagtgaagtaaagagtaatgggttcggaaactgtaagtttcggcaggaaatggaggaaaaaagtactgatatcgtcattgtgggtgccggagttgccggtgcagctcttgcttacactcttgccaaggaaggacgacgtgtgcatgtaatagaaagagacttgagtgagccagatagaattgttggggagctactgcagcctgggggatatctcaaattgattgagttgggtctcgaggattgtgcaaatgagtcaattgatgcccagaaagtgtttggttatgctctttacaaagatgggaaggatacaacactgtcttatcccttgaagaaatacagttcagatgtggctgggagaagtttccacaatggctgttttattcaaagaatgcgtgaaaaaattgcaactttttcaaagtaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

176

Amino Acids

19.36

Weight (kDa)

8.35

Isoelectric Point (pI)

28.49

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 194
AfaI GTAC 1 cut(s) 175
AflIII ACRYGT 1 cut(s) 247
AgsI TTSAA 5 cut(s) 103, 111, 439, 494, 525
AjiI CACGTC 1 cut(s) 248
AjnI CCWGG 1 cut(s) 310
AluBI AGCT 2 cut(s) 215, 301
AluI AGCT 2 cut(s) 215, 301
Alw26I GTCTC 2 cut(s) 261, 347
Ama87I CYCGRG 1 cut(s) 344
ApeKI GCWGC 2 cut(s) 212, 307
Asp700I GAANNNNTTC 1 cut(s) 98
AvaI CYCGRG 1 cut(s) 344
BanI GGYRCC 1 cut(s) 194
BanII GRGCYC 1 cut(s) 53
BbvI GCAGC 2 cut(s) 224, 319
BccI CCATC 1 cut(s) 401
BcgI CGANNNNNNTGC 2 cut(s) 335, 369
BciT130I CCWGG 1 cut(s) 312
BciVI GTATCC 1 cut(s) 409
BclI TGATCA 1 cut(s) 66
BcoDI GTCTC 2 cut(s) 261, 347
BfmI CTRYAG 1 cut(s) 305
BfuI GTATCC 1 cut(s) 409
BisI GCNGC 2 cut(s) 213, 308
BlsI GCNGC 2 cut(s) 214, 309
BmcAI AGTACT 1 cut(s) 175
Bme1390I CCNGG 1 cut(s) 312
BmeT110I CYCGRG 1 cut(s) 344
BmgBI CACGTC 1 cut(s) 248
BmiI GGNNCC 1 cut(s) 196
BmrFI CCNGG 1 cut(s) 312
BmsI GCATC 1 cut(s) 361
BpuEI CTTGAG 1 cut(s) 292
BsaI GGTCTC 1 cut(s) 347
BsaJI CCNNGG 2 cut(s) 234, 311
Bse118I RCCGGY 1 cut(s) 206
BseBI CCWGG 1 cut(s) 312
BseDI CCNNGG 2 cut(s) 234, 311
BseXI GCAGC 2 cut(s) 224, 319
BseYI CCCAGC 2 cut(s) 46, 461
BsgI GTGCAG 1 cut(s) 231
BshNI GGYRCC 1 cut(s) 194
BsiHKCI CYCGRG 1 cut(s) 344
BsiSI CCGG 2 cut(s) 198, 207
BsmAI GTCTC 2 cut(s) 261, 347
BsmI GAATGC 1 cut(s) 504
Bso31I GGTCTC 1 cut(s) 347
BsoBI CYCGRG 1 cut(s) 344
Bsp1286I GDGCHC 1 cut(s) 53
Bsp143I GATC 1 cut(s) 66
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 196
BspMAI CTGCAG 1 cut(s) 309
BspT107I GGYRCC 1 cut(s) 194
BspTNI GGTCTC 1 cut(s) 347
BsrFI RCCGGY 1 cut(s) 206
BssAI RCCGGY 1 cut(s) 206
BssECI CCNNGG 2 cut(s) 234, 311
BssMI GATC 1 cut(s) 66
BssT1I CCWWGG 1 cut(s) 234
Bst2UI CCWGG 1 cut(s) 312
Bst4CI ACNGT 3 cut(s) 143, 426, 449
BstAPI GCANNNNNTGC 1 cut(s) 218
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 2 cut(s) 261, 347
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 4 cut(s) 203, 212, 218, 307
BstNI CCWGG 1 cut(s) 312
BstNSI RCATGY 1 cut(s) 257
BstSCI CCNGG 1 cut(s) 310
BstSFI CTRYAG 1 cut(s) 305
BstV1I GCAGC 2 cut(s) 224, 319
BsuI GTATCC 1 cut(s) 409
BtrI CACGTC 1 cut(s) 248
BtsIMutI CAGTG 1 cut(s) 422
CciI TCATGA 1 cut(s) 63
Cfr10I RCCGGY 1 cut(s) 206
Csp6I GTAC 1 cut(s) 174
CviAII CATG 2 cut(s) 64, 254
CviJI RGCY 7 cut(s) 51, 215, 280, 301, 310, 461, 483
CviKI_1 RGCY 7 cut(s) 51, 215, 280, 301, 310, 461, 483
CviQI GTAC 1 cut(s) 174
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco130I CCWWGG 1 cut(s) 234
Eco24I GRGCYC 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 347
Eco32I GATATC 2 cut(s) 181, 320
Eco88I CYCGRG 1 cut(s) 344
EcoRII CCWGG 1 cut(s) 310
EcoRV GATATC 2 cut(s) 181, 320
EcoT14I CCWWGG 1 cut(s) 234
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 1 cut(s) 234
FaeI CATG 2 cut(s) 67, 257
FaiI YATR 4 cut(s) 18, 65, 255, 393
FatI CATG 2 cut(s) 63, 253
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 2 cut(s) 213, 308
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 2 cut(s) 213, 308
GluI GCNGC 2 cut(s) 213, 308
GsaI CCCAGC 2 cut(s) 50, 465
HapII CCGG 2 cut(s) 198, 207
Hin1II CATG 2 cut(s) 67, 257
HinfI GANTC 1 cut(s) 362
HpaII CCGG 2 cut(s) 198, 207
Hpy188I TCNGA 2 cut(s) 137, 454
Hpy188III TCNNGA 2 cut(s) 64, 344
Hpy99I CGWCG 1 cut(s) 249
HpyAV CCTTC 2 cut(s) 233, 406
HpyCH4III ACNGT 3 cut(s) 143, 426, 449
HpyCH4IV ACGT 1 cut(s) 247
HpyCH4V TGCA 5 cut(s) 212, 253, 307, 356, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 203, 212, 218, 307
HpySE526I ACGT 1 cut(s) 247
Hsp92II CATG 2 cut(s) 67, 257
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 298
LpnPI CCDG 9 cut(s) 32, 140, 211, 220, 294, 297, 324, 389, 447
Lsp1109I GCAGC 2 cut(s) 224, 319
LweI GCATC 1 cut(s) 361
MaeII ACGT 1 cut(s) 247
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 2 cut(s) 52, 451
MfeI CAATTG 1 cut(s) 366
MhlI GDGCHC 1 cut(s) 53
MluCI AATT 5 cut(s) 98, 288, 326, 366, 510
MlyI GAGTC 1 cut(s) 371
MnlI CCTC 3 cut(s) 80, 157, 340
MroXI GAANNNNTTC 1 cut(s) 98
MspI CCGG 2 cut(s) 198, 207
MspR9I CCNGG 1 cut(s) 312
MunI CAATTG 1 cut(s) 366
Mva1269I GAATGC 1 cut(s) 504
MvaI CCWGG 1 cut(s) 312
MwoI GCNNNNNNNGC 4 cut(s) 203, 212, 218, 307
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 67, 257
NlaIV GGNNCC 1 cut(s) 196
NspI RCATGY 1 cut(s) 257
PaeR7I CTCGAG 1 cut(s) 344
PagI TCATGA 1 cut(s) 63
PctI GAATGC 1 cut(s) 504
PdmI GAANNNNTTC 1 cut(s) 98
PkrI GCNGC 2 cut(s) 214, 309
PleI GAGTC 1 cut(s) 370
PpsI GAGTC 1 cut(s) 370
Psp6I CCWGG 1 cut(s) 310
PspFI CCCAGC 2 cut(s) 46, 461
PspGI CCWGG 1 cut(s) 310
PspN4I GGNNCC 1 cut(s) 196
PstI CTGCAG 1 cut(s) 309
RsaI GTAC 1 cut(s) 175
RsaNI GTAC 1 cut(s) 174
SatI GCNGC 2 cut(s) 213, 308
Sau3AI GATC 1 cut(s) 66
ScaI AGTACT 1 cut(s) 175
SchI GAGTC 1 cut(s) 371
ScrFI CCNGG 1 cut(s) 312
SduI GDGCHC 1 cut(s) 53
SetI ASST 4 cut(s) 108, 217, 250, 303
SfaNI GCATC 1 cut(s) 361
SfcI CTRYAG 1 cut(s) 305
Sfr274I CTCGAG 1 cut(s) 344
SlaI CTCGAG 1 cut(s) 344
SmlI CTYRAG 2 cut(s) 271, 344
SmoI CTYRAG 2 cut(s) 271, 344
Sse9I AATT 5 cut(s) 98, 288, 326, 366, 510
StyD4I CCNGG 1 cut(s) 310
StyI CCWWGG 1 cut(s) 234
TaaI ACNGT 3 cut(s) 143, 426, 449
TaiI ACGT 1 cut(s) 250
TaqI TCGA 1 cut(s) 345
TasI AATT 5 cut(s) 98, 288, 326, 366, 510
TatI WGTACW 1 cut(s) 173
TscAI CASTG 1 cut(s) 429
TseI GCWGC 2 cut(s) 212, 307
TspDTI ATGAA 1 cut(s) 52
TspRI CASTG 1 cut(s) 429
XceI RCATGY 1 cut(s) 257
XcmI CCANNNNNNNNNTGG 1 cut(s) 383
XhoI CTCGAG 1 cut(s) 344
XmnI GAANNNNTTC 1 cut(s) 98
ZrmI AGTACT 1 cut(s) 175
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.