squalene
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 272 |
| AciI | CCGC | 2 cut(s) | 332, 647 |
| AclWI | GGATC | 2 cut(s) | 473, 816 |
| AcuI | CTGAAG | 1 cut(s) | 543 |
| AfaI | GTAC | 3 cut(s) | 293, 514, 555 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 713, 761 |
| AflII | CTTAAG | 1 cut(s) | 628 |
| AflIII | ACRYGT | 1 cut(s) | 463 |
| AgsI | TTSAA | 6 cut(s) | 44, 263, 363, 398, 592, 742 |
| AjnI | CCWGG | 2 cut(s) | 17, 712 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 313, 345 |
| AluBI | AGCT | 4 cut(s) | 147, 442, 566, 625 |
| AluI | AGCT | 4 cut(s) | 147, 442, 566, 625 |
| Alw26I | GTCTC | 2 cut(s) | 742, 812 |
| AlwI | GGATC | 2 cut(s) | 473, 816 |
| AoxI | GGCC | 1 cut(s) | 303 |
| ApeKI | GCWGC | 2 cut(s) | 644, 695 |
| AsuC2I | CCSGG | 1 cut(s) | 543 |
| AsuHPI | GGTGA | 1 cut(s) | 477 |
| AxyI | CCTNAGG | 1 cut(s) | 609 |
| BaeGI | GKGCMC | 2 cut(s) | 275, 548 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 537, 570 |
| BanI | GGYRCC | 1 cut(s) | 272 |
| BbvCI | CCTCAGC | 1 cut(s) | 702 |
| BbvI | GCAGC | 2 cut(s) | 656, 682 |
| BccI | CCATC | 4 cut(s) | 284, 344, 497, 627 |
| BciT130I | CCWGG | 2 cut(s) | 19, 714 |
| BcnI | CCSGG | 1 cut(s) | 543 |
| BcoDI | GTCTC | 2 cut(s) | 742, 812 |
| BfaI | CTAG | 1 cut(s) | 641 |
| BfrI | CTTAAG | 1 cut(s) | 628 |
| BisI | GCNGC | 2 cut(s) | 645, 696 |
| BlsI | GCNGC | 2 cut(s) | 646, 697 |
| Bme1390I | CCNGG | 3 cut(s) | 19, 543, 714 |
| BmiI | GGNNCC | 3 cut(s) | 274, 606, 615 |
| BmrFI | CCNGG | 3 cut(s) | 19, 543, 714 |
| BmrI | ACTGGG | 1 cut(s) | 737 |
| BmsI | GCATC | 3 cut(s) | 58, 344, 724 |
| BmuI | ACTGGG | 1 cut(s) | 737 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 13, 45 |
| BpmI | CTGGAG | 1 cut(s) | 40 |
| Bpu10I | CCTNAGC | 1 cut(s) | 702 |
| BpuMI | CCSGG | 1 cut(s) | 543 |
| BsaI | GGTCTC | 1 cut(s) | 812 |
| BsaJI | CCNNGG | 3 cut(s) | 17, 132, 516 |
| BsaWI | WCCGGW | 1 cut(s) | 761 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 313, 343 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 713, 761 |
| Bse118I | RCCGGY | 1 cut(s) | 691 |
| Bse1I | ACTGG | 1 cut(s) | 732 |
| Bse21I | CCTNAGG | 1 cut(s) | 609 |
| Bse3DI | GCAATG | 1 cut(s) | 115 |
| BseBI | CCWGG | 2 cut(s) | 19, 714 |
| BseDI | CCNNGG | 3 cut(s) | 17, 132, 516 |
| BseGI | GGATG | 5 cut(s) | 186, 359, 489, 739, 751 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 713, 761 |
| BseMI | GCAATG | 1 cut(s) | 115 |
| BseMII | CTCAG | 4 cut(s) | 86, 623, 716, 807 |
| BseNI | ACTGG | 1 cut(s) | 732 |
| BseRI | GAGGAG | 4 cut(s) | 326, 597, 690, 780 |
| BseSI | GKGCMC | 2 cut(s) | 275, 548 |
| BseXI | GCAGC | 2 cut(s) | 656, 682 |
| BshFI | GGCC | 1 cut(s) | 305 |
| BshNI | GGYRCC | 1 cut(s) | 272 |
| BsiSI | CCGG | 4 cut(s) | 306, 542, 692, 762 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 713, 761 |
| BsmAI | GTCTC | 2 cut(s) | 742, 812 |
| BsnI | GGCC | 1 cut(s) | 305 |
| Bso31I | GGTCTC | 1 cut(s) | 812 |
| Bsp1286I | GDGCHC | 2 cut(s) | 275, 548 |
| Bsp1407I | TGTACA | 1 cut(s) | 291 |
| Bsp143I | GATC | 4 cut(s) | 7, 423, 478, 808 |
| BspACI | CCGC | 2 cut(s) | 332, 647 |
| BspANI | GGCC | 1 cut(s) | 305 |
| BspCNI | CTCAG | 4 cut(s) | 85, 622, 715, 808 |
| BspLI | GGNNCC | 3 cut(s) | 274, 606, 615 |
| BspPI | GGATC | 2 cut(s) | 473, 816 |
| BspT107I | GGYRCC | 1 cut(s) | 272 |
| BspTI | CTTAAG | 1 cut(s) | 628 |
| BspTNI | GGTCTC | 1 cut(s) | 812 |
| BsrDI | GCAATG | 1 cut(s) | 115 |
| BsrFI | RCCGGY | 1 cut(s) | 691 |
| BsrGI | TGTACA | 1 cut(s) | 291 |
| BsrI | ACTGG | 1 cut(s) | 732 |
| BssAI | RCCGGY | 1 cut(s) | 691 |
| BssECI | CCNNGG | 3 cut(s) | 17, 132, 516 |
| BssMI | GATC | 4 cut(s) | 7, 423, 478, 808 |
| BssT1I | CCWWGG | 1 cut(s) | 132 |
| Bst2UI | CCWGG | 2 cut(s) | 19, 714 |
| Bst4CI | ACNGT | 2 cut(s) | 247, 778 |
| BstAFI | CTTAAG | 1 cut(s) | 628 |
| BstAUI | TGTACA | 1 cut(s) | 291 |
| BstC8I | GCNNGC | 4 cut(s) | 160, 440, 689, 693 |
| BstDEI | CTNAG | 6 cut(s) | 72, 609, 702, 803, 816, 825 |
| BstF5I | GGATG | 5 cut(s) | 186, 359, 489, 739, 751 |
| BstKTI | GATC | 4 cut(s) | 10, 426, 481, 811 |
| BstMAI | GTCTC | 2 cut(s) | 742, 812 |
| BstMBI | GATC | 4 cut(s) | 7, 423, 478, 808 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 354, 641 |
| BstNI | CCWGG | 2 cut(s) | 19, 714 |
| BstNSI | RCATGY | 2 cut(s) | 467, 691 |
| BstSCI | CCNGG | 3 cut(s) | 17, 541, 712 |
| BstSLI | GKGCMC | 2 cut(s) | 275, 548 |
| BstV1I | GCAGC | 2 cut(s) | 656, 682 |
| BstX2I | RGATCY | 1 cut(s) | 478 |
| BstYI | RGATCY | 1 cut(s) | 478 |
| Bsu36I | CCTNAGG | 1 cut(s) | 609 |
| BsuRI | GGCC | 1 cut(s) | 305 |
| BtgZI | GCGATG | 2 cut(s) | 139, 363 |
| BtsCI | GGATG | 5 cut(s) | 186, 359, 489, 739, 751 |
| BtsIMutI | CAGTG | 1 cut(s) | 252 |
| Cac8I | GCNNGC | 4 cut(s) | 160, 440, 689, 693 |
| Cfr10I | RCCGGY | 1 cut(s) | 691 |
| CseI | GACGC | 1 cut(s) | 359 |
| Csp6I | GTAC | 3 cut(s) | 292, 513, 554 |
| CviAII | CATG | 5 cut(s) | 449, 458, 464, 688, 745 |
| CviQI | GTAC | 3 cut(s) | 292, 513, 554 |
| DdeI | CTNAG | 6 cut(s) | 72, 609, 702, 803, 816, 825 |
| DpnI | GATC | 4 cut(s) | 9, 425, 480, 810 |
| DpnII | GATC | 4 cut(s) | 7, 423, 478, 808 |
| Eco130I | CCWWGG | 1 cut(s) | 132 |
| Eco31I | GGTCTC | 1 cut(s) | 812 |
| Eco57I | CTGAAG | 1 cut(s) | 543 |
| Eco81I | CCTNAGG | 1 cut(s) | 609 |
| EcoRII | CCWGG | 2 cut(s) | 17, 712 |
| EcoT14I | CCWWGG | 1 cut(s) | 132 |
| ErhI | CCWWGG | 1 cut(s) | 132 |
| FaeI | CATG | 5 cut(s) | 452, 461, 467, 691, 748 |
| FatI | CATG | 5 cut(s) | 448, 457, 463, 687, 744 |
| FauNDI | CATATG | 1 cut(s) | 325 |
| Fnu4HI | GCNGC | 2 cut(s) | 645, 696 |
| FokI | GGATG | 5 cut(s) | 173, 366, 476, 738, 746 |
| Fsp4HI | GCNGC | 2 cut(s) | 645, 696 |
| FspBI | CTAG | 1 cut(s) | 641 |
| GluI | GCNGC | 2 cut(s) | 645, 696 |
| GsuI | CTGGAG | 1 cut(s) | 40 |
| HaeIII | GGCC | 1 cut(s) | 305 |
| HapII | CCGG | 4 cut(s) | 306, 542, 692, 762 |
| HgaI | GACGC | 1 cut(s) | 359 |
| Hin1II | CATG | 5 cut(s) | 452, 461, 467, 691, 748 |
| HinfI | GANTC | 3 cut(s) | 59, 469, 660 |
| HpaII | CCGG | 4 cut(s) | 306, 542, 692, 762 |
| HphI | GGTGA | 1 cut(s) | 477 |
| Hpy188I | TCNGA | 6 cut(s) | 75, 151, 390, 668, 790, 817 |
| Hpy188III | TCNNGA | 1 cut(s) | 41 |
| HpyAV | CCTTC | 2 cut(s) | 492, 567 |
| HpyCH4III | ACNGT | 2 cut(s) | 247, 778 |
| HpyCH4V | TGCA | 4 cut(s) | 53, 452, 676, 719 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 354, 641 |
| HpyF3I | CTNAG | 6 cut(s) | 72, 609, 702, 803, 816, 825 |
| Hsp92II | CATG | 5 cut(s) | 452, 461, 467, 691, 748 |
| KroI | GCCGGC | 1 cut(s) | 691 |
| KroNI | GCCGGC | 1 cut(s) | 693 |
| Kzo9I | GATC | 4 cut(s) | 7, 423, 478, 808 |
| LmnI | GCTCC | 3 cut(s) | 334, 610, 703 |
| Lsp1109I | GCAGC | 2 cut(s) | 656, 682 |
| LweI | GCATC | 3 cut(s) | 58, 344, 724 |
| MaeI | CTAG | 1 cut(s) | 641 |
| MaeIII | GTNAC | 2 cut(s) | 247, 371 |
| MalI | GATC | 4 cut(s) | 9, 425, 480, 810 |
| MboI | GATC | 4 cut(s) | 7, 423, 478, 808 |
| MboII | GAAGA | 4 cut(s) | 56, 209, 275, 791 |
| MflI | RGATCY | 1 cut(s) | 478 |
| MhlI | GDGCHC | 2 cut(s) | 275, 548 |
| MluCI | AATT | 4 cut(s) | 32, 230, 258, 720 |
| MmeI | TCCRAC | 1 cut(s) | 813 |
| MnlI | CCTC | 9 cut(s) | 15, 304, 456, 511, 591, 618, 711, 758, 761 |
| MroNI | GCCGGC | 1 cut(s) | 691 |
| MseI | TTAA | 2 cut(s) | 629, 758 |
| MslI | CAYNNNNRTG | 1 cut(s) | 462 |
| MspA1I | CMGCKG | 1 cut(s) | 647 |
| MspCI | CTTAAG | 1 cut(s) | 628 |
| MspI | CCGG | 4 cut(s) | 306, 542, 692, 762 |
| MspR9I | CCNGG | 3 cut(s) | 19, 543, 714 |
| MvaI | CCWGG | 2 cut(s) | 19, 714 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 354, 641 |
| NaeI | GCCGGC | 1 cut(s) | 693 |
| NciI | CCSGG | 1 cut(s) | 543 |
| NdeI | CATATG | 1 cut(s) | 325 |
| NdeII | GATC | 4 cut(s) | 7, 423, 478, 808 |
| NgoMIV | GCCGGC | 1 cut(s) | 691 |
| NlaIII | CATG | 5 cut(s) | 452, 461, 467, 691, 748 |
| NlaIV | GGNNCC | 3 cut(s) | 274, 606, 615 |
| NmuCI | GTSAC | 2 cut(s) | 247, 371 |
| NspI | RCATGY | 2 cut(s) | 467, 691 |
| PaeI | GCATGC | 1 cut(s) | 691 |
| PciI | ACATGT | 1 cut(s) | 463 |
| PdiI | GCCGGC | 1 cut(s) | 693 |
| PfeI | GAWTC | 3 cut(s) | 59, 469, 660 |
| PkrI | GCNGC | 2 cut(s) | 646, 697 |
| PscI | ACATGT | 1 cut(s) | 463 |
| Psp6I | CCWGG | 2 cut(s) | 17, 712 |
| PspGI | CCWGG | 2 cut(s) | 17, 712 |
| PspN4I | GGNNCC | 3 cut(s) | 274, 606, 615 |
| PsuI | RGATCY | 1 cut(s) | 478 |
| RsaI | GTAC | 3 cut(s) | 293, 514, 555 |
| RsaNI | GTAC | 3 cut(s) | 292, 513, 554 |
| RseI | CAYNNNNRTG | 1 cut(s) | 462 |
| SaqAI | TTAA | 2 cut(s) | 629, 758 |
| SatI | GCNGC | 2 cut(s) | 645, 696 |
| Sau3AI | GATC | 4 cut(s) | 7, 423, 478, 808 |
| ScrFI | CCNGG | 3 cut(s) | 19, 543, 714 |
| SduI | GDGCHC | 2 cut(s) | 275, 548 |
| SetI | ASST | 8 cut(s) | 40, 149, 444, 522, 559, 568, 615, 627 |
| SfaNI | GCATC | 3 cut(s) | 58, 344, 724 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 462 |
| SmlI | CTYRAG | 1 cut(s) | 628 |
| SmoI | CTYRAG | 1 cut(s) | 628 |
| SphI | GCATGC | 1 cut(s) | 691 |
| Sse9I | AATT | 4 cut(s) | 32, 230, 258, 720 |
| SsiI | CCGC | 2 cut(s) | 332, 647 |
| SspI | AATATT | 2 cut(s) | 394, 587 |
| SspMI | CTAG | 1 cut(s) | 641 |
| StyD4I | CCNGG | 3 cut(s) | 17, 541, 712 |
| StyI | CCWWGG | 1 cut(s) | 132 |
| TaaI | ACNGT | 2 cut(s) | 247, 778 |
| TaqI | TCGA | 1 cut(s) | 10 |
| TasI | AATT | 4 cut(s) | 32, 230, 258, 720 |
| TatI | WGTACW | 1 cut(s) | 291 |
| TfiI | GAWTC | 3 cut(s) | 59, 469, 660 |
| Tru1I | TTAA | 2 cut(s) | 629, 758 |
| Tru9I | TTAA | 2 cut(s) | 629, 758 |
| TscAI | CASTG | 1 cut(s) | 252 |
| TseFI | GTSAC | 2 cut(s) | 247, 371 |
| TseI | GCWGC | 2 cut(s) | 644, 695 |
| Tsp45I | GTSAC | 2 cut(s) | 247, 371 |
| TspDTI | ATGAA | 1 cut(s) | 175 |
| TspRI | CASTG | 1 cut(s) | 252 |
| Vha464I | CTTAAG | 1 cut(s) | 628 |
| XceI | RCATGY | 2 cut(s) | 467, 691 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 229 |
| XspI | CTAG | 1 cut(s) | 641 |