RLG00000015232

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr3
OG0000108
Physical Location & Seq
Reverse (-)
63397048 .. 63431758
34711 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000015232

Sequence Viewer

Length: 1533 bp
ATGGTTTCTTACGAGTATATTCTGGGTGGGTTGTTAGTTTCTTTGCTGGGCTCTGTTTTCTTCATGATCATAAGTACTACTCTTGGTGGAAACAAAAAGGTTAAGGCTTTAAGTGGAGGAGTCAAGAGTAATGCGTTTGGAGACGGTGCGTTTCGGTCGGAAATGGAGGAGGAGAAAAGTACCGACGTCGTCATTGTCGGTGCCGGAGTTGCCGGTGCAGCTCTTGCTTACACTCTTGCCAAGGAAGGACGCCGGGTACATGTCATCGAAAGAGACTTGAATGAGCCAGATAGAATTGTTGGTGAGCTGTTGAAGCCTGGGGGTTATCTCAAATTGATTAAGTTGGGACTTGAGGACTGTGCAAATGAGTCCATTGATGCTCAGAAGGTGTTTGGTTATGCTCTTTACAAAGATGGAAAGGATACTACATTGTCTAATCCCTTAGAAAAATACAGTTCAGATGTGGCTGGGAGAAGTTTCCACAATGGTCGTTTCATTCAGAGAATGCGTGAAAAAGCTGTAACTCTTTCAAATGTAAAATTGGAACAAGGATCAGTGACGACACTAATCGAGGAAAAGGGCATTGTTAAAGGGGTGATTTACAAGAACAAGGTTGGAGAAGAGATGAGAACATATGCTCCACTAACTATTGTATGCGATGGCTGCTTTTCAAATCTGCGCAAATCTCTTAGTGCTCCAAAGGTTGAAAGTCCCTCTTGTTTTGTTGGTTTGATCTTGGAGACTGTGACCTTCCACATGCAAATCATGGACATTTGCACGGAGGTTCGTTGTTTGGTTGATATACCTGGAACAAAAGTACCTTCAGTAGCTAATGGTGAAATGGTTAACTATCTGAAGACTGTAGTGGCTCCTCAGGTTAGCCCACAACTGTACAATGCTTTTATGGCCGCTGTCAACAAGGGAAACATCAAATCCATGCAAAACAAAAGCATGGCTGCTAATCCTGTTCCCACTCCTGGTGCAATTTTATTGGGGGATTCATTCAACATGAGGCATCCTTTAACTGGAGGAGGAATGACCGTGGCTCTTTCAGACATAGTTCTTCTCCGTGATCTTCTTAGACCCTTATGTAATCTCAATGATGCACCTGCTTTGTGCAATTACCTTGAATCATTTTATACTCTGCGTAAGCCTGTATCATCCACCATAAATACATTGGCAGGTGCTTTGTACAAGGTGTTTTGTGCCTCACCTGATCCAGCGAGACAGGAAATGCGTGAAGCATGTTTTGGCTATTTGAGCCTTGGAGGCATCTGCTCATATGGACCAGTATCGCTTCTCTCTGGTCTTAACCCTCGTCCACTGCACTTGGTTCTCCATTTCTTTGCTGTTGCCATCTATGGTGTCGGCCGTTTAATGCTTCCATTCCCTTCACCTAAACGCATGTGGCTTGGGGCTAGATTGATCTTGAGCGCATCAGGCATCATATTCCCCATTATAAAGGGCGAAGGAGTTAGATGTTTTTTTCCTGCCACAGTACCAGCATATTACAGAGTTCCTCCTATTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

511

Amino Acids

55.28

Weight (kDa)

8.97

Isoelectric Point (pI)

36.94

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 61 - 356 1.7e-13 FAD binding domain
DAO PF01266 62 - 92 5.1e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 62 - 91 8.2e-06 FAD binding domain
NAD_binding_8 PF13450 65 - 91 1.7e-06 NAD(P)-binding Rossmann-like domain
SE PF08491 213 - 470 1.9e-94 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 1460
AarI CACCTGC 2 cut(s) 1117, 1172
AatII GACGTC 1 cut(s) 189
Acc16I TGCGCA 1 cut(s) 680
Acc36I ACCTGC 2 cut(s) 1117, 1172
AccB1I GGYRCC 1 cut(s) 200
AciI CCGC 1 cut(s) 909
AclWI GGATC 2 cut(s) 559, 1211
AcoI YGGCCR 2 cut(s) 906, 1369
AcuI CTGAAG 2 cut(s) 807, 875
AcyI GRCGYC 2 cut(s) 186, 250
AfaI GTAC 7 cut(s) 76, 181, 258, 819, 893, 1193, 1500
AfiI CCNNNNNNNGG 2 cut(s) 977, 1025
AflIII ACRYGT 1 cut(s) 259
AgsI TTSAA 7 cut(s) 280, 313, 531, 672, 707, 1006, 1130
AjnI CCWGG 3 cut(s) 316, 805, 976
AjuI GAANNNNNNNTTGG 2 cut(s) 1233, 1265
AloI GAACNNNNNNTCC 2 cut(s) 622, 654
AluBI AGCT 4 cut(s) 221, 307, 518, 830
AluI AGCT 4 cut(s) 221, 307, 518, 830
Alw21I GWGCWC 1 cut(s) 697
Alw26I GTCTC 4 cut(s) 135, 267, 734, 1219
AlwI GGATC 2 cut(s) 559, 1211
AoxI GGCC 2 cut(s) 906, 1369
ApeKI GCWGC 3 cut(s) 218, 663, 956
AspLEI GCGC 2 cut(s) 681, 1436
AspS9I GGNCC 1 cut(s) 1286
AsuC2I CCSGG 1 cut(s) 254
AsuHPI GGTGA 5 cut(s) 314, 607, 848, 1203, 1386
AvaII GGWCC 1 cut(s) 1286
AxyI CCTNAGG 1 cut(s) 873
BaeI ACNNNNGTAYC 2 cut(s) 801, 834
BanI GGYRCC 1 cut(s) 200
BanII GRGCYC 1 cut(s) 53
BbsI GAAGAC 1 cut(s) 863
Bbv12I GWGCWC 1 cut(s) 697
BbvI GCAGC 3 cut(s) 230, 650, 943
BccI CCATC 3 cut(s) 407, 653, 1364
BceAI ACGGC 1 cut(s) 1356
BciT130I CCWGG 3 cut(s) 318, 807, 978
BciVI GTATCC 1 cut(s) 415
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 254
BcoDI GTCTC 4 cut(s) 135, 267, 734, 1219
BfaI CTAG 1 cut(s) 1419
BfmI CTRYAG 1 cut(s) 861
BfuAI ACCTGC 2 cut(s) 1117, 1172
BfuI GTATCC 1 cut(s) 415
BglI GCCNNNNNGGC 1 cut(s) 1269
BisI GCNGC 4 cut(s) 219, 664, 909, 957
BlsI GCNGC 4 cut(s) 220, 665, 910, 958
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 4 cut(s) 254, 318, 807, 978
Bme18I GGWCC 1 cut(s) 1286
BmgT120I GGNCC 1 cut(s) 1286
BmiI GGNNCC 2 cut(s) 202, 870
BmrFI CCNGG 4 cut(s) 254, 318, 807, 978
BmsI GCATC 6 cut(s) 367, 1024, 1093, 1281, 1445, 1452
BpiI GAAGAC 1 cut(s) 863
BpmI CTGGAG 1 cut(s) 1047
BpuEI CTTGAG 2 cut(s) 371, 1450
BpuMI CCSGG 1 cut(s) 254
BsaHI GRCGYC 2 cut(s) 186, 250
BsaJI CCNNGG 4 cut(s) 240, 317, 1041, 1264
BsaXI ACNNNNNCTCC 2 cut(s) 622, 652
Bsc4I CCNNNNNNNGG 2 cut(s) 977, 1025
Bse118I RCCGGY 1 cut(s) 212
Bse1I ACTGG 2 cut(s) 1030, 1289
Bse21I CCTNAGG 1 cut(s) 873
BseBI CCWGG 3 cut(s) 318, 807, 978
BseDI CCNNGG 4 cut(s) 240, 317, 1041, 1264
BseGI GGATG 2 cut(s) 1015, 1160
BseLI CCNNNNNNNGG 2 cut(s) 977, 1025
BseMII CTCAG 2 cut(s) 395, 887
BseNI ACTGG 2 cut(s) 1030, 1289
BseRI GAGGAG 5 cut(s) 132, 182, 185, 861, 1044
BseX3I CGGCCG 1 cut(s) 1369
BseXI GCAGC 3 cut(s) 230, 650, 943
BseYI CCCAGC 2 cut(s) 46, 467
BsgI GTGCAG 2 cut(s) 237, 1310
Bsh1285I CGRYCG 2 cut(s) 158, 1372
BshFI GGCC 2 cut(s) 908, 1371
BshNI GGYRCC 1 cut(s) 200
BsiEI CGRYCG 2 cut(s) 158, 1372
BsiHKAI GWGCWC 1 cut(s) 697
BsiSI CCGG 3 cut(s) 204, 213, 253
BslFI GGGAC 2 cut(s) 360, 696
BslI CCNNNNNNNGG 2 cut(s) 977, 1025
BsmAI GTCTC 4 cut(s) 135, 267, 734, 1219
BsmBI CGTCTC 1 cut(s) 135
BsmFI GGGAC 2 cut(s) 360, 696
BsmI GAATGC 1 cut(s) 510
BsnI GGCC 2 cut(s) 908, 1371
Bsp1286I GDGCHC 2 cut(s) 53, 697
Bsp1407I TGTACA 2 cut(s) 891, 1191
Bsp143I GATC 6 cut(s) 66, 551, 732, 1072, 1216, 1425
BspACI CCGC 1 cut(s) 909
BspANI GGCC 2 cut(s) 908, 1371
BspCNI CTCAG 2 cut(s) 394, 886
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 202, 870
BspMI ACCTGC 2 cut(s) 1117, 1172
BspPI GGATC 2 cut(s) 559, 1211
BspT107I GGYRCC 1 cut(s) 200
BsrFI RCCGGY 1 cut(s) 212
BsrGI TGTACA 2 cut(s) 891, 1191
BsrI ACTGG 2 cut(s) 1030, 1289
BssAI RCCGGY 1 cut(s) 212
BssECI CCNNGG 4 cut(s) 240, 317, 1041, 1264
BssMI GATC 6 cut(s) 66, 551, 732, 1072, 1216, 1425
BssNI GRCGYC 2 cut(s) 186, 250
BssT1I CCWWGG 2 cut(s) 240, 1264
Bst2UI CCWGG 3 cut(s) 318, 807, 978
Bst4CI ACNGT 8 cut(s) 146, 359, 455, 745, 862, 891, 1042, 1498
Bst6I CTCTTC 1 cut(s) 615
BstACI GRCGYC 2 cut(s) 186, 250
BstAPI GCANNNNNTGC 1 cut(s) 224
BstAUI TGTACA 2 cut(s) 891, 1191
BstDEI CTNAG 5 cut(s) 381, 442, 689, 873, 1079
BstDSI CCRYGG 1 cut(s) 1041
BstF5I GGATG 2 cut(s) 1015, 1160
BstHHI GCGC 2 cut(s) 681, 1436
BstKTI GATC 6 cut(s) 69, 554, 735, 1075, 1219, 1428
BstMAI GTCTC 4 cut(s) 135, 267, 734, 1219
BstMBI GATC 6 cut(s) 66, 551, 732, 1072, 1216, 1425
BstMCI CGRYCG 2 cut(s) 158, 1372
BstMWI GCNNNNNNNGC 9 cut(s) 209, 218, 224, 313, 663, 905, 1260, 1269, 1440
BstNI CCWGG 3 cut(s) 318, 807, 978
BstNSI RCATGY 4 cut(s) 263, 760, 1248, 1408
BstSCI CCNGG 4 cut(s) 252, 316, 805, 976
BstSFI CTRYAG 1 cut(s) 861
BstV1I GCAGC 3 cut(s) 230, 650, 943
BstV2I GAAGAC 1 cut(s) 863
BstZI CGGCCG 1 cut(s) 1369
Bsu36I CCTNAGG 1 cut(s) 873
BsuI GTATCC 1 cut(s) 415
BsuRI GGCC 2 cut(s) 908, 1371
BtgI CCRYGG 1 cut(s) 1041
BtgZI GCGATG 1 cut(s) 672
BtsCI GGATG 2 cut(s) 1015, 1160
BtsI GCAGTG 1 cut(s) 1322
BtsIMutI CAGTG 2 cut(s) 561, 1322
BveI ACCTGC 2 cut(s) 1117, 1172
CciI TCATGA 1 cut(s) 63
CfoI GCGC 2 cut(s) 681, 1436
Cfr10I RCCGGY 1 cut(s) 212
Cfr13I GGNCC 1 cut(s) 1286
CseI GACGC 1 cut(s) 258
Csp6I GTAC 7 cut(s) 75, 180, 257, 818, 892, 1192, 1499
CspCI CAANNNNNGTGG 2 cut(s) 1311, 1346
CviAII CATG 9 cut(s) 64, 260, 757, 766, 937, 952, 1009, 1245, 1405
CviQI GTAC 7 cut(s) 75, 180, 257, 818, 892, 1192, 1499
DdeI CTNAG 5 cut(s) 381, 442, 689, 873, 1079
DpnI GATC 6 cut(s) 68, 553, 734, 1074, 1218, 1427
DpnII GATC 6 cut(s) 66, 551, 732, 1072, 1216, 1425
EaeI YGGCCR 2 cut(s) 906, 1369
EagI CGGCCG 1 cut(s) 1369
Eam1104I CTCTTC 1 cut(s) 615
EarI CTCTTC 1 cut(s) 615
EclXI CGGCCG 1 cut(s) 1369
Eco130I CCWWGG 2 cut(s) 240, 1264
Eco24I GRGCYC 1 cut(s) 53
Eco47I GGWCC 1 cut(s) 1286
Eco52I CGGCCG 1 cut(s) 1369
Eco57I CTGAAG 2 cut(s) 807, 875
Eco81I CCTNAGG 1 cut(s) 873
EcoRII CCWGG 3 cut(s) 316, 805, 976
EcoT14I CCWWGG 2 cut(s) 240, 1264
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 2 cut(s) 240, 1264
Esp3I CGTCTC 1 cut(s) 135
FaeI CATG 9 cut(s) 67, 263, 760, 769, 940, 955, 1012, 1248, 1408
FalI AAGNNNNNCTT 2 cut(s) 700, 732
FaqI GGGAC 2 cut(s) 360, 696
FatI CATG 9 cut(s) 63, 259, 756, 765, 936, 951, 1008, 1244, 1404
FauNDI CATATG 2 cut(s) 634, 1282
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 4 cut(s) 219, 664, 909, 957
FokI GGATG 2 cut(s) 1002, 1147
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 4 cut(s) 219, 664, 909, 957
FspBI CTAG 1 cut(s) 1419
FspI TGCGCA 1 cut(s) 680
GlaI GCGC 2 cut(s) 680, 1435
GluI GCNGC 4 cut(s) 219, 664, 909, 957
GsaI CCCAGC 2 cut(s) 50, 471
GsuI CTGGAG 1 cut(s) 1047
HaeIII GGCC 2 cut(s) 908, 1371
HapII CCGG 3 cut(s) 204, 213, 253
HgaI GACGC 1 cut(s) 258
HhaI GCGC 2 cut(s) 681, 1436
Hin1I GRCGYC 2 cut(s) 186, 250
Hin1II CATG 9 cut(s) 67, 263, 760, 769, 940, 955, 1012, 1248, 1408
Hin6I GCGC 2 cut(s) 679, 1434
HinP1I GCGC 2 cut(s) 679, 1434
HincII GTYRAC 2 cut(s) 847, 916
HindII GTYRAC 2 cut(s) 847, 916
HinfI GANTC 4 cut(s) 120, 368, 998, 1130
HpaI GTTAAC 1 cut(s) 847
HpaII CCGG 3 cut(s) 204, 213, 253
HphI GGTGA 5 cut(s) 314, 607, 848, 1203, 1386
Hpy166II GTNNAC 3 cut(s) 847, 916, 1322
Hpy188I TCNGA 6 cut(s) 160, 384, 460, 501, 855, 1054
Hpy188III TCNNGA 3 cut(s) 64, 124, 1429
Hpy8I GTNNAC 3 cut(s) 847, 916, 1322
Hpy99I CGWCG 2 cut(s) 188, 191
HpyAV CCTTC 6 cut(s) 239, 379, 760, 831, 1401, 1463
HpyCH4III ACNGT 8 cut(s) 146, 359, 455, 745, 862, 891, 1042, 1498
HpyCH4IV ACGT 1 cut(s) 186
HpyCH4V TGCA 9 cut(s) 218, 362, 760, 777, 940, 983, 1106, 1119, 1327
HpyF10VI GCNNNNNNNGC 9 cut(s) 209, 218, 224, 313, 663, 905, 1260, 1269, 1440
HpyF3I CTNAG 5 cut(s) 381, 442, 689, 873, 1079
HpySE526I ACGT 1 cut(s) 186
Hsp92I GRCGYC 2 cut(s) 186, 250
Hsp92II CATG 9 cut(s) 67, 263, 760, 769, 940, 955, 1012, 1248, 1408
HspAI GCGC 2 cut(s) 679, 1434
Ksp22I TGATCA 1 cut(s) 66
KspAI GTTAAC 1 cut(s) 847
Kzo9I GATC 6 cut(s) 66, 551, 732, 1072, 1216, 1425
LmnI GCTCC 3 cut(s) 643, 700, 874
Lsp1109I GCAGC 3 cut(s) 230, 650, 943
LweI GCATC 6 cut(s) 367, 1024, 1093, 1281, 1445, 1452
MaeI CTAG 1 cut(s) 1419
MaeII ACGT 1 cut(s) 186
MaeIII GTNAC 3 cut(s) 520, 556, 745
MalI GATC 6 cut(s) 68, 553, 734, 1074, 1218, 1427
MboI GATC 6 cut(s) 66, 551, 732, 1072, 1216, 1425
MboII GAAGA 5 cut(s) 52, 632, 868, 1055, 1067
MhlI GDGCHC 2 cut(s) 53, 697
MluCI AATT 5 cut(s) 294, 332, 539, 984, 1120
MlyI GAGTC 2 cut(s) 129, 377
MmeI TCCRAC 2 cut(s) 138, 595
MseI TTAA 8 cut(s) 102, 110, 339, 588, 846, 1022, 1311, 1376
MspA1I CMGCKG 1 cut(s) 911
MspI CCGG 3 cut(s) 204, 213, 253
MspR9I CCNGG 4 cut(s) 254, 318, 807, 978
Mva1269I GAATGC 1 cut(s) 510
MvaI CCWGG 3 cut(s) 318, 807, 978
MwoI GCNNNNNNNGC 9 cut(s) 209, 218, 224, 313, 663, 905, 1260, 1269, 1440
NciI CCSGG 1 cut(s) 254
NdeI CATATG 2 cut(s) 634, 1282
NdeII GATC 6 cut(s) 66, 551, 732, 1072, 1216, 1425
NlaIII CATG 9 cut(s) 67, 263, 760, 769, 940, 955, 1012, 1248, 1408
NlaIV GGNNCC 2 cut(s) 202, 870
NmuCI GTSAC 2 cut(s) 556, 745
NsbI TGCGCA 1 cut(s) 680
NspI RCATGY 4 cut(s) 263, 760, 1248, 1408
PagI TCATGA 1 cut(s) 63
PaqCI CACCTGC 2 cut(s) 1117, 1172
PciI ACATGT 1 cut(s) 259
PctI GAATGC 1 cut(s) 510
PfeI GAWTC 2 cut(s) 998, 1130
PflFI GACNNNGTC 1 cut(s) 188
PkrI GCNGC 4 cut(s) 220, 665, 910, 958
PleI GAGTC 2 cut(s) 128, 376
PpsI GAGTC 2 cut(s) 128, 376
PscI ACATGT 1 cut(s) 259
PsiI TTATAA 1 cut(s) 1460
Psp6I CCWGG 3 cut(s) 316, 805, 976
PspFI CCCAGC 2 cut(s) 46, 467
PspGI CCWGG 3 cut(s) 316, 805, 976
PspN4I GGNNCC 2 cut(s) 202, 870
PspPI GGNCC 1 cut(s) 1286
PsyI GACNNNGTC 1 cut(s) 188
RsaI GTAC 7 cut(s) 76, 181, 258, 819, 893, 1193, 1500
RsaNI GTAC 7 cut(s) 75, 180, 257, 818, 892, 1192, 1499
SaqAI TTAA 8 cut(s) 102, 110, 339, 588, 846, 1022, 1311, 1376
SatI GCNGC 4 cut(s) 219, 664, 909, 957
Sau3AI GATC 6 cut(s) 66, 551, 732, 1072, 1216, 1425
Sau96I GGNCC 1 cut(s) 1286
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 2 cut(s) 129, 377
ScrFI CCNGG 4 cut(s) 254, 318, 807, 978
SduI GDGCHC 2 cut(s) 53, 697
SfaNI GCATC 6 cut(s) 367, 1024, 1093, 1281, 1445, 1452
SfcI CTRYAG 1 cut(s) 861
SinI GGWCC 1 cut(s) 1286
SmlI CTYRAG 2 cut(s) 350, 1429
SmoI CTYRAG 2 cut(s) 350, 1429
Sse9I AATT 5 cut(s) 294, 332, 539, 984, 1120
SsiI CCGC 1 cut(s) 909
SspMI CTAG 1 cut(s) 1419
StyD4I CCNGG 4 cut(s) 252, 316, 805, 976
StyI CCWWGG 2 cut(s) 240, 1264
TaaI ACNGT 8 cut(s) 146, 359, 455, 745, 862, 891, 1042, 1498
TaiI ACGT 1 cut(s) 189
TaqI TCGA 2 cut(s) 267, 570
TaqII GACCGA 1 cut(s) 144
TasI AATT 5 cut(s) 294, 332, 539, 984, 1120
TatI WGTACW 3 cut(s) 74, 891, 1191
TauI GCSGC 1 cut(s) 911
TfiI GAWTC 2 cut(s) 998, 1130
Tru1I TTAA 8 cut(s) 102, 110, 339, 588, 846, 1022, 1311, 1376
Tru9I TTAA 8 cut(s) 102, 110, 339, 588, 846, 1022, 1311, 1376
TscAI CASTG 2 cut(s) 561, 1329
TseFI GTSAC 2 cut(s) 556, 745
TseI GCWGC 3 cut(s) 218, 663, 956
Tsp45I GTSAC 2 cut(s) 556, 745
TspDTI ATGAA 4 cut(s) 52, 484, 990, 1517
TspGWI ACGGA 2 cut(s) 794, 1058
TspRI CASTG 2 cut(s) 561, 1329
Tth111I GACNNNGTC 1 cut(s) 188
VpaK11BI GGWCC 1 cut(s) 1286
XceI RCATGY 4 cut(s) 263, 760, 1248, 1408
XcmI CCANNNNNNNNNTGG 1 cut(s) 1174
XspI CTAG 1 cut(s) 1419
ZraI GACGTC 1 cut(s) 187
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.