Rmu_sc0006767.1_g000002

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006767.1
OG0000108
Physical Location & Seq
Forward (+)
1972 .. 2220
249 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006767.1_g000002.1.cds

Sequence Viewer

Length: 249 bp
atgctttgggtggaatcttggcttcattgctgggctctgttttgcttcatgatcatcactaccacacttggtggaaacaaaaaggtcaaggctttaagtggaggaggagtaaagagtaatgggttgggaaatggtccatttttgctggaaatggaggaggagaaaagtactaatgtcgtcattgtcggtgccggagttgccagtgcagctcttgcttacactcttgccaaggtcagcttacgattttaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

82

Amino Acids

8.73

Weight (kDa)

8.71

Isoelectric Point (pI)

22.21

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 188
AdeI CACNNNGTG 1 cut(s) 71
AfaI GTAC 1 cut(s) 169
AluBI AGCT 2 cut(s) 209, 237
AluI AGCT 2 cut(s) 209, 237
ApeKI GCWGC 1 cut(s) 206
AspS9I GGNCC 1 cut(s) 134
AvaII GGWCC 1 cut(s) 134
BanI GGYRCC 1 cut(s) 188
BanII GRGCYC 1 cut(s) 37
BbvI GCAGC 1 cut(s) 218
BclI TGATCA 1 cut(s) 51
BisI GCNGC 1 cut(s) 207
BlsI GCNGC 1 cut(s) 208
BmcAI AGTACT 1 cut(s) 169
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmiI GGNNCC 1 cut(s) 190
BsaJI CCNNGG 1 cut(s) 228
BsaXI ACNNNNNCTCC 2 cut(s) 93, 123
Bse1I ACTGG 1 cut(s) 201
Bse3DI GCAATG 1 cut(s) 25
BseDI CCNNGG 1 cut(s) 228
BseMI GCAATG 1 cut(s) 25
BseNI ACTGG 1 cut(s) 201
BseRI GAGGAG 4 cut(s) 117, 120, 170, 173
BseXI GCAGC 1 cut(s) 218
BseYI CCCAGC 1 cut(s) 30
BsgI GTGCAG 1 cut(s) 225
BshNI GGYRCC 1 cut(s) 188
BsiSI CCGG 1 cut(s) 192
Bsp1286I GDGCHC 1 cut(s) 37
Bsp143I GATC 1 cut(s) 51
BspHI TCATGA 1 cut(s) 48
BspLI GGNNCC 1 cut(s) 190
BspT107I GGYRCC 1 cut(s) 188
BsrDI GCAATG 1 cut(s) 25
BsrI ACTGG 1 cut(s) 201
BssECI CCNNGG 1 cut(s) 228
BssMI GATC 1 cut(s) 51
BssT1I CCWWGG 1 cut(s) 228
BstAPI GCANNNNNTGC 1 cut(s) 212
BstKTI GATC 1 cut(s) 54
BstMBI GATC 1 cut(s) 51
BstMWI GCNNNNNNNGC 3 cut(s) 197, 206, 212
BstV1I GCAGC 1 cut(s) 218
BtsIMutI CAGTG 1 cut(s) 208
CciI TCATGA 1 cut(s) 48
Cfr13I GGNCC 1 cut(s) 134
Csp6I GTAC 1 cut(s) 168
CviAII CATG 1 cut(s) 49
CviJI RGCY 5 cut(s) 22, 35, 92, 209, 237
CviKI_1 RGCY 5 cut(s) 22, 35, 92, 209, 237
CviQI GTAC 1 cut(s) 168
DpnI GATC 1 cut(s) 53
DpnII GATC 1 cut(s) 51
DraIII CACNNNGTG 1 cut(s) 71
Eco130I CCWWGG 1 cut(s) 228
Eco24I GRGCYC 1 cut(s) 37
Eco47I GGWCC 1 cut(s) 134
EcoT14I CCWWGG 1 cut(s) 228
EcoT38I GRGCYC 1 cut(s) 37
ErhI CCWWGG 1 cut(s) 228
FaeI CATG 1 cut(s) 52
FaiI YATR 1 cut(s) 50
FalI AAGNNNNNCTT 1 cut(s) 221
FatI CATG 1 cut(s) 48
FbaI TGATCA 1 cut(s) 51
Fnu4HI GCNGC 1 cut(s) 207
FriOI GRGCYC 1 cut(s) 37
Fsp4HI GCNGC 1 cut(s) 207
GluI GCNGC 1 cut(s) 207
GsaI CCCAGC 1 cut(s) 34
HapII CCGG 1 cut(s) 192
Hin1II CATG 1 cut(s) 52
HinfI GANTC 1 cut(s) 14
HpaII CCGG 1 cut(s) 192
Hpy188III TCNNGA 1 cut(s) 49
HpyCH4V TGCA 1 cut(s) 206
HpyF10VI GCNNNNNNNGC 3 cut(s) 197, 206, 212
Hsp92II CATG 1 cut(s) 52
Ksp22I TGATCA 1 cut(s) 51
Kzo9I GATC 1 cut(s) 51
LpnPI CCDG 4 cut(s) 16, 131, 205, 214
Lsp1109I GCAGC 1 cut(s) 218
MalI GATC 1 cut(s) 53
MboI GATC 1 cut(s) 51
MhlI GDGCHC 1 cut(s) 37
MnlI CCTC 4 cut(s) 95, 98, 148, 151
MseI TTAA 2 cut(s) 95, 247
MspI CCGG 1 cut(s) 192
MwoI GCNNNNNNNGC 3 cut(s) 197, 206, 212
NdeII GATC 1 cut(s) 51
NlaIII CATG 1 cut(s) 52
NlaIV GGNNCC 1 cut(s) 190
PagI TCATGA 1 cut(s) 48
PfeI GAWTC 1 cut(s) 14
PkrI GCNGC 1 cut(s) 208
PspFI CCCAGC 1 cut(s) 30
PspN4I GGNNCC 1 cut(s) 190
PspPI GGNCC 1 cut(s) 134
RsaI GTAC 1 cut(s) 169
RsaNI GTAC 1 cut(s) 168
SaqAI TTAA 2 cut(s) 95, 247
SatI GCNGC 1 cut(s) 207
Sau3AI GATC 1 cut(s) 51
Sau96I GGNCC 1 cut(s) 134
ScaI AGTACT 1 cut(s) 169
SduI GDGCHC 1 cut(s) 37
SetI ASST 4 cut(s) 87, 211, 234, 239
SinI GGWCC 1 cut(s) 134
StyI CCWWGG 1 cut(s) 228
TatI WGTACW 1 cut(s) 167
TfiI GAWTC 1 cut(s) 14
Tru1I TTAA 2 cut(s) 95, 247
Tru9I TTAA 2 cut(s) 95, 247
TscAI CASTG 1 cut(s) 208
TseI GCWGC 1 cut(s) 206
TspDTI ATGAA 2 cut(s) 14, 37
TspRI CASTG 1 cut(s) 208
VpaK11BI GGWCC 1 cut(s) 134
ZrmI AGTACT 1 cut(s) 169
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.