Rmu_co8367749.1_g000001

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8367749.1
OG0000108
Physical Location & Seq
Reverse (-)
83 .. 799
717 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8367749.1_g000001.1.cds

Sequence Viewer

Length: 480 bp
atgggtaaaccacatgttgctattgacgtgcatgagggttttgatggcaggagtgtttattctttcatgagaccaacatattccaccgaggttcgctgtttggtggatgtacctggaacaaaagtaccttcagtagctagtggtgaaatggccaactatttgaaaacagtggtggctcctcaggttcccccacagctgtacaatgcttttatggccgcagtagagaaaggaaacattagatccatgcaaaataaaagcatggctgctaatcctcttcctagtcctggtgcaattttattaggggattcattcaacatgaggcatcctttaacaggaggaggaatgactgtggctctttcagacattgttcttctccgcgatcttcttagacccttacatgatcttgatgatgcaccggctttgtgcaattacctagaatcattctatacactgcgtaaggtaaagccggcattcggataa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

159

Amino Acids

17.26

Weight (kDa)

7.8

Isoelectric Point (pI)

46.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 378
AciI CCGC 2 cut(s) 216, 376
AclWI GGATC 1 cut(s) 234
AcoI YGGCCR 2 cut(s) 150, 213
AcuI CTGAAG 1 cut(s) 114
AfaI GTAC 3 cut(s) 111, 126, 200
AfiI CCNNNNNNNGG 3 cut(s) 284, 332, 473
AflIII ACRYGT 1 cut(s) 13
AgsI TTSAA 2 cut(s) 163, 313
AjiI CACGTC 1 cut(s) 28
AjnI CCWGG 2 cut(s) 112, 283
AluBI AGCT 2 cut(s) 137, 196
AluI AGCT 2 cut(s) 137, 196
Alw26I GTCTC 1 cut(s) 64
AlwI GGATC 1 cut(s) 234
AoxI GGCC 2 cut(s) 150, 213
ApeKI GCWGC 1 cut(s) 263
AsuHPI GGTGA 1 cut(s) 155
AxyI CCTNAGG 1 cut(s) 180
BaeI ACNNNNGTAYC 2 cut(s) 108, 141
BalI TGGCCA 1 cut(s) 152
BbvI GCAGC 1 cut(s) 250
BccI CCATC 1 cut(s) 38
BciT130I CCWGG 2 cut(s) 114, 285
BcoDI GTCTC 1 cut(s) 64
BfaI CTAG 3 cut(s) 138, 279, 434
BisI GCNGC 2 cut(s) 216, 264
BlsI GCNGC 2 cut(s) 217, 265
Bme1390I CCNGG 2 cut(s) 114, 285
BmgBI CACGTC 1 cut(s) 28
BmiI GGNNCC 2 cut(s) 177, 186
BmrFI CCNGG 2 cut(s) 114, 285
BmsI GCATC 2 cut(s) 331, 400
BsaI GGTCTC 1 cut(s) 64
BsaJI CCNNGG 1 cut(s) 87
Bsc4I CCNNNNNNNGG 3 cut(s) 284, 332, 473
Bse118I RCCGGY 2 cut(s) 415, 466
Bse21I CCTNAGG 1 cut(s) 180
BseBI CCWGG 2 cut(s) 114, 285
BseDI CCNNGG 1 cut(s) 87
BseGI GGATG 2 cut(s) 112, 322
BseLI CCNNNNNNNGG 3 cut(s) 284, 332, 473
BseMII CTCAG 1 cut(s) 194
BseRI GAGGAG 2 cut(s) 168, 351
BseXI GCAGC 1 cut(s) 250
Bsh1236I CGCG 1 cut(s) 378
BshFI GGCC 2 cut(s) 152, 215
BsiSI CCGG 2 cut(s) 416, 467
BslI CCNNNNNNNGG 3 cut(s) 284, 332, 473
BsmAI GTCTC 1 cut(s) 64
BsmI GAATGC 1 cut(s) 470
BsnI GGCC 2 cut(s) 152, 215
Bso31I GGTCTC 1 cut(s) 64
Bsp1407I TGTACA 1 cut(s) 198
Bsp143I GATC 3 cut(s) 239, 379, 400
BspACI CCGC 2 cut(s) 216, 376
BspANI GGCC 2 cut(s) 152, 215
BspCNI CTCAG 1 cut(s) 193
BspFNI CGCG 1 cut(s) 378
BspHI TCATGA 1 cut(s) 66
BspLI GGNNCC 2 cut(s) 177, 186
BspPI GGATC 1 cut(s) 234
BspTNI GGTCTC 1 cut(s) 64
BsrFI RCCGGY 2 cut(s) 415, 466
BsrGI TGTACA 1 cut(s) 198
BssAI RCCGGY 2 cut(s) 415, 466
BssECI CCNNGG 1 cut(s) 87
BssMI GATC 3 cut(s) 239, 379, 400
Bst2UI CCWGG 2 cut(s) 114, 285
Bst4CI ACNGT 2 cut(s) 169, 349
Bst6I CTCTTC 1 cut(s) 279
BstAUI TGTACA 1 cut(s) 198
BstC8I GCNNGC 1 cut(s) 468
BstDEI CTNAG 2 cut(s) 180, 386
BstENI CCTNNNNNAGG 1 cut(s) 330
BstF5I GGATG 2 cut(s) 112, 322
BstFNI CGCG 1 cut(s) 378
BstKTI GATC 3 cut(s) 242, 382, 403
BstMAI GTCTC 1 cut(s) 64
BstMBI GATC 3 cut(s) 239, 379, 400
BstMWI GCNNNNNNNGC 1 cut(s) 212
BstNI CCWGG 2 cut(s) 114, 285
BstNSI RCATGY 1 cut(s) 17
BstSCI CCNGG 2 cut(s) 112, 283
BstUI CGCG 1 cut(s) 378
BstV1I GCAGC 1 cut(s) 250
BstX2I RGATCY 1 cut(s) 239
BstYI RGATCY 1 cut(s) 239
Bsu36I CCTNAGG 1 cut(s) 180
BsuRI GGCC 2 cut(s) 152, 215
BtrI CACGTC 1 cut(s) 28
BtsCI GGATG 2 cut(s) 112, 322
BtsI GCAGTG 1 cut(s) 449
BtsIMutI CAGTG 2 cut(s) 174, 449
Cac8I GCNNGC 1 cut(s) 468
CciI TCATGA 1 cut(s) 66
Cfr10I RCCGGY 2 cut(s) 415, 466
Csp6I GTAC 3 cut(s) 110, 125, 199
CviAII CATG 7 cut(s) 14, 32, 67, 244, 259, 316, 398
CviJI RGCY 9 cut(s) 137, 152, 176, 196, 215, 263, 353, 419, 466
CviKI_1 RGCY 9 cut(s) 137, 152, 176, 196, 215, 263, 353, 419, 466
CviQI GTAC 3 cut(s) 110, 125, 199
DdeI CTNAG 2 cut(s) 180, 386
DpnI GATC 3 cut(s) 241, 381, 402
DpnII GATC 3 cut(s) 239, 379, 400
EaeI YGGCCR 2 cut(s) 150, 213
Eam1104I CTCTTC 1 cut(s) 279
EarI CTCTTC 1 cut(s) 279
Eco31I GGTCTC 1 cut(s) 64
Eco57I CTGAAG 1 cut(s) 114
Eco81I CCTNAGG 1 cut(s) 180
EcoNI CCTNNNNNAGG 1 cut(s) 330
EcoRII CCWGG 2 cut(s) 112, 283
FaeI CATG 7 cut(s) 17, 35, 70, 247, 262, 319, 401
FatI CATG 7 cut(s) 13, 31, 66, 243, 258, 315, 397
Fnu4HI GCNGC 2 cut(s) 216, 264
FokI GGATG 2 cut(s) 119, 309
Fsp4HI GCNGC 2 cut(s) 216, 264
FspBI CTAG 3 cut(s) 138, 279, 434
GluI GCNGC 2 cut(s) 216, 264
HaeIII GGCC 2 cut(s) 152, 215
HapII CCGG 2 cut(s) 416, 467
Hin1II CATG 7 cut(s) 17, 35, 70, 247, 262, 319, 401
HinfI GANTC 2 cut(s) 305, 437
HpaII CCGG 2 cut(s) 416, 467
HphI GGTGA 1 cut(s) 155
Hpy166II GTNNAC 1 cut(s) 8
Hpy188I TCNGA 2 cut(s) 361, 476
Hpy188III TCNNGA 2 cut(s) 67, 404
Hpy8I GTNNAC 1 cut(s) 8
HpyAV CCTTC 1 cut(s) 138
HpyCH4III ACNGT 2 cut(s) 169, 349
HpyCH4IV ACGT 1 cut(s) 27
HpyCH4V TGCA 5 cut(s) 31, 247, 290, 413, 426
HpyF10VI GCNNNNNNNGC 1 cut(s) 212
HpyF3I CTNAG 2 cut(s) 180, 386
HpySE526I ACGT 1 cut(s) 27
Hsp92II CATG 7 cut(s) 17, 35, 70, 247, 262, 319, 401
KroI GCCGGC 1 cut(s) 466
KroNI GCCGGC 1 cut(s) 468
Kzo9I GATC 3 cut(s) 239, 379, 400
LmnI GCTCC 1 cut(s) 181
LpnPI CCDG 8 cut(s) 34, 99, 126, 167, 270, 297, 318, 429
Lsp1109I GCAGC 1 cut(s) 250
LweI GCATC 2 cut(s) 331, 400
MaeI CTAG 3 cut(s) 138, 279, 434
MaeII ACGT 1 cut(s) 27
MalI GATC 3 cut(s) 241, 381, 402
MboI GATC 3 cut(s) 239, 379, 400
MboII GAAGA 3 cut(s) 266, 362, 374
MflI RGATCY 1 cut(s) 239
MlsI TGGCCA 1 cut(s) 152
MluCI AATT 2 cut(s) 291, 427
MluNI TGGCCA 1 cut(s) 152
MnlI CCTC 7 cut(s) 28, 82, 189, 282, 312, 329, 332
Mox20I TGGCCA 1 cut(s) 152
MroNI GCCGGC 1 cut(s) 466
MscI TGGCCA 1 cut(s) 152
MseI TTAA 1 cut(s) 329
Msp20I TGGCCA 1 cut(s) 152
MspA1I CMGCKG 1 cut(s) 196
MspI CCGG 2 cut(s) 416, 467
MspR9I CCNGG 2 cut(s) 114, 285
Mva1269I GAATGC 1 cut(s) 470
MvaI CCWGG 2 cut(s) 114, 285
MvnI CGCG 1 cut(s) 378
MwoI GCNNNNNNNGC 1 cut(s) 212
NaeI GCCGGC 1 cut(s) 468
NdeII GATC 3 cut(s) 239, 379, 400
NgoMIV GCCGGC 1 cut(s) 466
NlaIII CATG 7 cut(s) 17, 35, 70, 247, 262, 319, 401
NlaIV GGNNCC 2 cut(s) 177, 186
NspI RCATGY 1 cut(s) 17
PagI TCATGA 1 cut(s) 66
PciI ACATGT 1 cut(s) 13
PctI GAATGC 1 cut(s) 470
PdiI GCCGGC 1 cut(s) 468
PfeI GAWTC 2 cut(s) 305, 437
PkrI GCNGC 2 cut(s) 217, 265
PscI ACATGT 1 cut(s) 13
Psp6I CCWGG 2 cut(s) 112, 283
PspGI CCWGG 2 cut(s) 112, 283
PspN4I GGNNCC 2 cut(s) 177, 186
PsuI RGATCY 1 cut(s) 239
PvuII CAGCTG 1 cut(s) 196
RsaI GTAC 3 cut(s) 111, 126, 200
RsaNI GTAC 3 cut(s) 110, 125, 199
SaqAI TTAA 1 cut(s) 329
SatI GCNGC 2 cut(s) 216, 264
Sau3AI GATC 3 cut(s) 239, 379, 400
ScrFI CCNGG 2 cut(s) 114, 285
SetI ASST 9 cut(s) 30, 93, 115, 130, 139, 186, 198, 435, 462
SfaNI GCATC 2 cut(s) 331, 400
Sse9I AATT 2 cut(s) 291, 427
SsiI CCGC 2 cut(s) 216, 376
SspMI CTAG 3 cut(s) 138, 279, 434
StyD4I CCNGG 2 cut(s) 112, 283
TaaI ACNGT 2 cut(s) 169, 349
TaiI ACGT 1 cut(s) 30
TasI AATT 2 cut(s) 291, 427
TatI WGTACW 1 cut(s) 198
TauI GCSGC 1 cut(s) 218
TfiI GAWTC 2 cut(s) 305, 437
Tru1I TTAA 1 cut(s) 329
Tru9I TTAA 1 cut(s) 329
TscAI CASTG 2 cut(s) 174, 456
TseI GCWGC 1 cut(s) 263
TspDTI ATGAA 2 cut(s) 55, 297
TspRI CASTG 2 cut(s) 174, 456
XagI CCTNNNNNAGG 1 cut(s) 330
XceI RCATGY 1 cut(s) 17
XspI CTAG 3 cut(s) 138, 279, 434
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.