Rmu_sc0006875.1_g000001

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0006875.1
OG0000108
Physical Location & Seq
Forward (+)
1 .. 379
379 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0006875.1_g000001.1.cds

Sequence Viewer

Length: 285 bp
cctgtgtcatctaccataaacacattggcaggtgctttgcacaaggtgttttgtgcatcacctgatccggcaagacaggaaatgcgtgaagcctgtttcggctatttgagccttggaggcatctgctcctatggaccagtatctcttctctctggtcttaaccctcgtccattacacttgtttctccatttctttgctgttgccatctatggtgtcggccgcttactgtttccattcccttcacctaagcgcatgtggcttgggtttcaattgatcttggtatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

94

Amino Acids

10.28

Weight (kDa)

9.38

Isoelectric Point (pI)

46.08

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 20
Acc36I ACCTGC 1 cut(s) 20
AciI CCGC 1 cut(s) 220
AclWI GGATC 1 cut(s) 59
AcoI YGGCCR 1 cut(s) 217
AdeI CACNNNGTG 1 cut(s) 46
AgsI TTSAA 1 cut(s) 269
AlwI GGATC 1 cut(s) 59
AoxI GGCC 1 cut(s) 217
AspLEI GCGC 1 cut(s) 252
AspS9I GGNCC 1 cut(s) 134
AsuHPI GGTGA 2 cut(s) 51, 234
AvaII GGWCC 1 cut(s) 134
BccI CCATC 1 cut(s) 212
BfuAI ACCTGC 1 cut(s) 20
BglI GCCNNNNNGGC 1 cut(s) 117
BisI GCNGC 1 cut(s) 220
BlsI GCNGC 1 cut(s) 221
Bme18I GGWCC 1 cut(s) 134
BmgT120I GGNCC 1 cut(s) 134
BmsI GCATC 2 cut(s) 65, 129
Bpu10I CCTNAGC 1 cut(s) 246
BsaJI CCNNGG 1 cut(s) 112
Bse1I ACTGG 1 cut(s) 137
BseDI CCNNGG 1 cut(s) 112
BseNI ACTGG 1 cut(s) 137
BseX3I CGGCCG 1 cut(s) 217
Bsh1285I CGRYCG 1 cut(s) 220
BshFI GGCC 1 cut(s) 219
BsiEI CGRYCG 1 cut(s) 220
BsiSI CCGG 1 cut(s) 68
BsnI GGCC 1 cut(s) 219
Bsp143I GATC 2 cut(s) 64, 273
BspACI CCGC 1 cut(s) 220
BspANI GGCC 1 cut(s) 219
BspMI ACCTGC 1 cut(s) 20
BspPI GGATC 1 cut(s) 59
BsrI ACTGG 1 cut(s) 137
BssECI CCNNGG 1 cut(s) 112
BssMI GATC 2 cut(s) 64, 273
BssT1I CCWWGG 1 cut(s) 112
Bst4CI ACNGT 1 cut(s) 228
Bst6I CTCTTC 1 cut(s) 150
BstDEI CTNAG 1 cut(s) 246
BstHHI GCGC 1 cut(s) 252
BstKTI GATC 2 cut(s) 67, 276
BstMBI GATC 2 cut(s) 64, 273
BstMCI CGRYCG 1 cut(s) 220
BstMWI GCNNNNNNNGC 3 cut(s) 108, 117, 256
BstNSI RCATGY 1 cut(s) 256
BstZI CGGCCG 1 cut(s) 217
BsuRI GGCC 1 cut(s) 219
BveI ACCTGC 1 cut(s) 20
CfoI GCGC 1 cut(s) 252
Cfr13I GGNCC 1 cut(s) 134
CviAII CATG 1 cut(s) 253
CviJI RGCY 5 cut(s) 92, 102, 111, 219, 259
CviKI_1 RGCY 5 cut(s) 92, 102, 111, 219, 259
DdeI CTNAG 1 cut(s) 246
DpnI GATC 2 cut(s) 66, 275
DpnII GATC 2 cut(s) 64, 273
DraIII CACNNNGTG 1 cut(s) 46
EaeI YGGCCR 1 cut(s) 217
EagI CGGCCG 1 cut(s) 217
Eam1104I CTCTTC 1 cut(s) 150
EarI CTCTTC 1 cut(s) 150
EclXI CGGCCG 1 cut(s) 217
Eco130I CCWWGG 1 cut(s) 112
Eco47I GGWCC 1 cut(s) 134
Eco52I CGGCCG 1 cut(s) 217
EcoT14I CCWWGG 1 cut(s) 112
ErhI CCWWGG 1 cut(s) 112
FaeI CATG 1 cut(s) 256
FaiI YATR 5 cut(s) 17, 132, 210, 254, 283
FatI CATG 1 cut(s) 252
Fnu4HI GCNGC 1 cut(s) 220
Fsp4HI GCNGC 1 cut(s) 220
GlaI GCGC 1 cut(s) 251
GluI GCNGC 1 cut(s) 220
HaeIII GGCC 1 cut(s) 219
HapII CCGG 1 cut(s) 68
HhaI GCGC 1 cut(s) 252
Hin1II CATG 1 cut(s) 256
Hin6I GCGC 1 cut(s) 250
HinP1I GCGC 1 cut(s) 250
HpaII CCGG 1 cut(s) 68
HphI GGTGA 2 cut(s) 51, 234
HpyAV CCTTC 1 cut(s) 249
HpyCH4III ACNGT 1 cut(s) 228
HpyCH4V TGCA 2 cut(s) 40, 56
HpyF10VI GCNNNNNNNGC 3 cut(s) 108, 117, 256
HpyF3I CTNAG 1 cut(s) 246
Hsp92II CATG 1 cut(s) 256
HspAI GCGC 1 cut(s) 250
Kzo9I GATC 2 cut(s) 64, 273
LmnI GCTCC 1 cut(s) 131
LpnPI CCDG 8 cut(s) 15, 15, 62, 75, 81, 106, 138, 150
LweI GCATC 2 cut(s) 65, 129
MalI GATC 2 cut(s) 66, 275
MboI GATC 2 cut(s) 64, 273
MboII GAAGA 1 cut(s) 137
MfeI CAATTG 1 cut(s) 269
MluCI AATT 1 cut(s) 269
MnlI CCTC 2 cut(s) 110, 174
MseI TTAA 1 cut(s) 159
MspI CCGG 1 cut(s) 68
MunI CAATTG 1 cut(s) 269
MwoI GCNNNNNNNGC 3 cut(s) 108, 117, 256
NdeII GATC 2 cut(s) 64, 273
NlaIII CATG 1 cut(s) 256
NspI RCATGY 1 cut(s) 256
PaqCI CACCTGC 1 cut(s) 20
PkrI GCNGC 1 cut(s) 221
PspPI GGNCC 1 cut(s) 134
SaqAI TTAA 1 cut(s) 159
SatI GCNGC 1 cut(s) 220
Sau3AI GATC 2 cut(s) 64, 273
Sau96I GGNCC 1 cut(s) 134
SetI ASST 4 cut(s) 34, 48, 64, 247
SfaNI GCATC 2 cut(s) 65, 129
SinI GGWCC 1 cut(s) 134
Sse9I AATT 1 cut(s) 269
SsiI CCGC 1 cut(s) 220
StyI CCWWGG 1 cut(s) 112
TaaI ACNGT 1 cut(s) 228
TasI AATT 1 cut(s) 269
TauI GCSGC 1 cut(s) 222
Tru1I TTAA 1 cut(s) 159
Tru9I TTAA 1 cut(s) 159
VpaK11BI GGWCC 1 cut(s) 134
XceI RCATGY 1 cut(s) 256
XcmI CCANNNNNNNNNTGG 1 cut(s) 22
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.