Rw6G003150

Squalene monooxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_wichuraiana
Chr6
OG0000108
Physical Location & Seq
Forward (+)
5074480 .. 5077300
2821 bp
Loading structure...
UTR
Exon/CDS
Intron
Rw6G003150.1

Sequence Viewer

Length: 1620 bp
ATGGATTACCTGTATACAACAGGAGCAGTCATAGCTTCATTGTTGAGTGTTGTTTTCTTATACACTTTTAGAGGGAAGAGGAAGAATGTCAAAGCTTCAATGAAGACTCAAAATGGGAAGCTTTTGAAGAGCTCTGGAAATGGAATGTGTTTGCCGGCAAAGATGGGTGCAAGTCCTGACATTGTCATTGTTGGAGCTGGAGTTGTTGGTTCGGCACTCGCTTATACTCTTGGGAAGGATGGCCGCCAAGTGCATGTGATTGAAAGAGACTTGACTGAACCAGATAGAATTGTTGGTGAACTGCTACAACCTGGGGGATATCTGAGATTGATTGAGTTGGGCCTTGAAGGTGAGCAAGGATACTTATTGTGTGATGAGATTGATGCTCAGAGAGTTTTTGGCTATGCGCTTTACAAGGATGGGAAAAGTTCCAAGCTGCCATATCCCTTGGAAAACTTCCATCCAGATGTGGCTGGCAGAAGCTTTCACCATGGCCGTTTCATTCAAAGGATGCGTGAAAAAGCTGCATCTCTTCCCAATGTAAGATTGGAACAAGGCACAGTGACATCTCTGCTTGAAGAACAGGGTACTGTCAAAGGGGTCCAATACAAATCCAAAGGCAGTGATCAGGAGCTCACCGCACACGCTCCCCTCACAATAGTCTGTGATGGTTGCTATTCAAACTTGCGACGCTCTCTCTGTGATGCGAAGGTTGATATTCCTTCATGTTTTGTTGGTTTAGTTCTTGAGAATTGCCAGCTACCATATGCAAATCATGGGCATGTGATATTAGCAGATCCTTCACCGATACTGTTTTATCCTATCAGCAGCACCGAGATTCGCTGCCTGGTTGATGTACCAGGCCAGAAAGTACCTTCAATTTCCAGTGGTGATATGGCTCACTACTTGAAAACAAAAGTGGCACCCCAAGTTCCACTTGAGCTGCATGCCGCTTTCTTGGCTGCCATTGATAATGGAAACATAAAATCAATGCCGAACAGAAGCATGCCTGCTGCTCCTCATCCCACCCCTGGTGCCTTTCTAATGGGGGATGCAGTCAATATGCGCCATCCTTTAACTGGAGGAGGCATGACTGTGGCTCTATCGGACATTGTGGTTGTTAGGGATCTTCTAAGACCTCTGGACAATCTCAATGATGCATCAGCTCTTTGCAAATACCTCGAGTCATTCTATACTCTTCGTAAGCCTGTGTCTTCTACCATAAACACATTGGCAGGTGCTCTATACAAGGTGTTCTGTGCATCTCCTGATCCAGCAAGGAAAGAAATGAGGGAAGCATGCTTTGACTACTTGAGTCTTGGTGGCATGTTTTCCAATGGACCTCTGGCTCTTCTCTCTGGTCTAAACCCTCATCCATTGAGCTTGATTCTCCACTTCTTTGCCGTGGCTATCTACGCTGTTGGGCGGCTGTTACTTCCATTCCCTTCACCCAAACGCATGTGGATTGGAGCTAGATTGATTTTGGGTGCATCAGGGATCATTTTCCCGATAATCAGCGCTGAAGGAGTAAGACAAATGTTCTTCCCTGTAATGGTTCCATCCTATCACAGAGCTCCTCCTGTTAATTTACATGACTTTGATAACAAGGCAATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

539

Amino Acids

58.62

Weight (kDa)

8.8

Isoelectric Point (pI)

40.45

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 60 - 374 2e-14 FAD binding domain
DAO PF01266 60 - 90 3.3e-06 FAD dependent oxidoreductase
SE PF08491 215 - 488 2.1e-118 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1226
Acc36I ACCTGC 1 cut(s) 1226
AccB1I GGYRCC 2 cut(s) 922, 1034
AccI GTMKAC 1 cut(s) 14
AciI CCGC 4 cut(s) 244, 639, 951, 1426
AclWI GGATC 4 cut(s) 791, 1134, 1265, 1505
AcoI YGGCCR 2 cut(s) 241, 493
AcuI CTGAAG 1 cut(s) 1542
AfaI GTAC 3 cut(s) 589, 858, 873
AfeI AGCGCT 1 cut(s) 1519
AfiI CCNNNNNNNGG 3 cut(s) 1031, 1079, 1552
AgsI TTSAA 9 cut(s) 99, 127, 263, 347, 506, 578, 681, 879, 910
AjnI CCWGG 4 cut(s) 310, 846, 859, 1030
Alw21I GWGCWC 4 cut(s) 134, 636, 1243, 1576
Alw26I GTCTC 1 cut(s) 261
AlwI GGATC 4 cut(s) 791, 1134, 1265, 1505
Ama87I CYCGRG 1 cut(s) 1181
Aor51HI AGCGCT 1 cut(s) 1519
AoxI GGCC 4 cut(s) 241, 340, 493, 862
ApeKI GCWGC 7 cut(s) 436, 524, 828, 843, 943, 962, 1013
AspLEI GCGC 3 cut(s) 409, 1068, 1520
AspS9I GGNCC 3 cut(s) 340, 601, 1340
AsuHPI GGTGA 7 cut(s) 308, 362, 479, 628, 795, 902, 1440
AvaI CYCGRG 1 cut(s) 1181
AvaII GGWCC 2 cut(s) 601, 1340
BanI GGYRCC 2 cut(s) 922, 1034
BanII GRGCYC 3 cut(s) 134, 636, 1576
BbsI GAAGAC 2 cut(s) 110, 1206
Bbv12I GWGCWC 4 cut(s) 134, 636, 1243, 1576
BbvI GCAGC 7 cut(s) 423, 511, 830, 840, 930, 949, 1000
BccI CCATC 7 cut(s) 157, 233, 413, 468, 662, 1077, 1567
BceAI ACGGC 2 cut(s) 480, 1388
BcgI CGANNNNNNTGC 2 cut(s) 1162, 1196
BciT130I CCWGG 4 cut(s) 312, 848, 861, 1032
BciVI GTATCC 1 cut(s) 353
BclI TGATCA 1 cut(s) 625
BcoDI GTCTC 1 cut(s) 261
BfaI CTAG 1 cut(s) 1473
BfoI RGCGCY 1 cut(s) 1521
BfuAI ACCTGC 1 cut(s) 1226
BfuI GTATCC 1 cut(s) 353
Bme1390I CCNGG 4 cut(s) 312, 848, 861, 1032
Bme18I GGWCC 2 cut(s) 601, 1340
BmeT110I CYCGRG 1 cut(s) 1181
BmgT120I GGNCC 3 cut(s) 340, 601, 1340
BmiI GGNNCC 4 cut(s) 602, 924, 1036, 1557
BmrFI CCNGG 4 cut(s) 312, 848, 861, 1032
BmsI GCATC 9 cut(s) 373, 501, 536, 694, 1042, 1147, 1169, 1271, 1499
BpiI GAAGAC 2 cut(s) 110, 1206
BpmI CTGGAG 2 cut(s) 219, 1101
BpuEI CTTGAG 3 cut(s) 767, 959, 1333
BsaJI CCNNGG 5 cut(s) 311, 447, 490, 1030, 1404
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 1031, 1079, 1552
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 885, 1084
BseBI CCWGG 4 cut(s) 312, 848, 861, 1032
BseDI CCNNGG 5 cut(s) 311, 447, 490, 1030, 1404
BseGI GGATG 9 cut(s) 244, 424, 460, 516, 1021, 1057, 1069, 1372, 1559
BseLI CCNNNNNNNGG 3 cut(s) 1031, 1079, 1552
BseMII CTCAG 2 cut(s) 314, 401
BseNI ACTGG 2 cut(s) 885, 1084
BseRI GAGGAG 3 cut(s) 1008, 1098, 1566
BseXI GCAGC 7 cut(s) 423, 511, 830, 840, 930, 949, 1000
BshFI GGCC 4 cut(s) 243, 342, 495, 864
BshNI GGYRCC 2 cut(s) 922, 1034
BsiHKAI GWGCWC 4 cut(s) 134, 636, 1243, 1576
BsiHKCI CYCGRG 1 cut(s) 1181
BsiSI CCGG 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 1031, 1079, 1552
BsmAI GTCTC 1 cut(s) 261
BsnI GGCC 4 cut(s) 243, 342, 495, 864
BsoBI CYCGRG 1 cut(s) 1181
Bsp1286I GDGCHC 4 cut(s) 134, 636, 1243, 1576
Bsp143I GATC 5 cut(s) 625, 796, 1126, 1270, 1497
Bsp19I CCATGG 1 cut(s) 490
BspACI CCGC 4 cut(s) 244, 639, 951, 1426
BspANI GGCC 4 cut(s) 243, 342, 495, 864
BspCNI CTCAG 2 cut(s) 315, 400
BspLI GGNNCC 4 cut(s) 602, 924, 1036, 1557
BspMI ACCTGC 1 cut(s) 1226
BspPI GGATC 4 cut(s) 791, 1134, 1265, 1505
BspQI GCTCTTC 2 cut(s) 122, 1356
BspT107I GGYRCC 2 cut(s) 922, 1034
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 2 cut(s) 885, 1084
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 5 cut(s) 311, 447, 490, 1030, 1404
BssMI GATC 5 cut(s) 625, 796, 1126, 1270, 1497
BssNAI GTATAC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 447, 490
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 4 cut(s) 312, 848, 861, 1032
Bst4CI ACNGT 4 cut(s) 562, 592, 813, 1096
Bst6I CTCTTC 5 cut(s) 71, 122, 537, 1203, 1356
BstC8I GCNNGC 7 cut(s) 156, 475, 758, 948, 1007, 1011, 1300
BstDEI CTNAG 3 cut(s) 323, 387, 1133
BstDSI CCRYGG 2 cut(s) 490, 1404
BstF5I GGATG 9 cut(s) 244, 424, 460, 516, 1021, 1057, 1069, 1372, 1559
BstH2I RGCGCY 1 cut(s) 1521
BstHHI GCGC 3 cut(s) 409, 1068, 1520
BstKTI GATC 5 cut(s) 628, 799, 1129, 1273, 1500
BstMAI GTCTC 1 cut(s) 261
BstMBI GATC 5 cut(s) 625, 796, 1126, 1270, 1497
BstMWI GCNNNNNNNGC 3 cut(s) 32, 959, 1415
BstNI CCWGG 4 cut(s) 312, 848, 861, 1032
BstNSI RCATGY 7 cut(s) 257, 785, 950, 1009, 1302, 1330, 1462
BstSCI CCNGG 4 cut(s) 310, 846, 859, 1030
BstV1I GCAGC 7 cut(s) 423, 511, 830, 840, 930, 949, 1000
BstV2I GAAGAC 2 cut(s) 110, 1206
BstX2I RGATCY 2 cut(s) 796, 1126
BstYI RGATCY 2 cut(s) 796, 1126
BstZ17I GTATAC 1 cut(s) 15
BsuI GTATCC 1 cut(s) 353
BsuRI GGCC 4 cut(s) 243, 342, 495, 864
BtgI CCRYGG 2 cut(s) 490, 1404
BtsCI GGATG 9 cut(s) 244, 424, 460, 516, 1021, 1057, 1069, 1372, 1559
BtsI GCAGTG 1 cut(s) 628
BtsIMutI CAGTG 3 cut(s) 567, 628, 892
BveI ACCTGC 1 cut(s) 1226
Cac8I GCNNGC 7 cut(s) 156, 475, 758, 948, 1007, 1011, 1300
CfoI GCGC 3 cut(s) 409, 1068, 1520
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 3 cut(s) 340, 601, 1340
CseI GACGC 1 cut(s) 699
Csp6I GTAC 3 cut(s) 588, 857, 872
CviQI GTAC 3 cut(s) 588, 857, 872
DdeI CTNAG 3 cut(s) 323, 387, 1133
DpnI GATC 5 cut(s) 627, 798, 1128, 1272, 1499
DpnII GATC 5 cut(s) 625, 796, 1126, 1270, 1497
EaeI YGGCCR 2 cut(s) 241, 493
Eam1104I CTCTTC 5 cut(s) 71, 122, 537, 1203, 1356
EarI CTCTTC 5 cut(s) 71, 122, 537, 1203, 1356
Ecl136II GAGCTC 3 cut(s) 132, 634, 1574
Eco130I CCWWGG 2 cut(s) 447, 490
Eco24I GRGCYC 3 cut(s) 134, 636, 1576
Eco32I GATATC 1 cut(s) 320
Eco47I GGWCC 2 cut(s) 601, 1340
Eco47III AGCGCT 1 cut(s) 1519
Eco53kI GAGCTC 3 cut(s) 132, 634, 1574
Eco57I CTGAAG 1 cut(s) 1542
Eco88I CYCGRG 1 cut(s) 1181
EcoICRI GAGCTC 3 cut(s) 132, 634, 1574
EcoRII CCWGG 4 cut(s) 310, 846, 859, 1030
EcoRV GATATC 1 cut(s) 320
EcoT14I CCWWGG 2 cut(s) 447, 490
EcoT22I ATGCAT 1 cut(s) 1162
EcoT38I GRGCYC 3 cut(s) 134, 636, 1576
ErhI CCWWGG 2 cut(s) 447, 490
FalI AAGNNNNNCTT 2 cut(s) 921, 953
FauNDI CATATG 1 cut(s) 766
FbaI TGATCA 1 cut(s) 625
FblI GTMKAC 1 cut(s) 14
FokI GGATG 9 cut(s) 251, 431, 447, 523, 1008, 1056, 1064, 1359, 1546
FriOI GRGCYC 3 cut(s) 134, 636, 1576
FspBI CTAG 1 cut(s) 1473
GlaI GCGC 3 cut(s) 408, 1067, 1519
GsuI CTGGAG 2 cut(s) 219, 1101
HaeII RGCGCY 1 cut(s) 1521
HaeIII GGCC 4 cut(s) 243, 342, 495, 864
HapII CCGG 1 cut(s) 155
HgaI GACGC 1 cut(s) 699
HhaI GCGC 3 cut(s) 409, 1068, 1520
Hin6I GCGC 3 cut(s) 407, 1066, 1518
HinP1I GCGC 3 cut(s) 407, 1066, 1518
HindIII AAGCTT 3 cut(s) 93, 119, 481
HinfI GANTC 5 cut(s) 106, 838, 1184, 1315, 1387
HpaII CCGG 1 cut(s) 155
HphI GGTGA 7 cut(s) 308, 362, 479, 628, 795, 902, 1440
Hpy166II GTNNAC 2 cut(s) 15, 299
Hpy188I TCNGA 4 cut(s) 324, 390, 1108, 1616
Hpy188III TCNNGA 8 cut(s) 135, 176, 464, 629, 746, 1142, 1268, 1507
Hpy8I GTNNAC 2 cut(s) 15, 299
Hpy99I CGWCG 1 cut(s) 693
HpyAV CCTTC 8 cut(s) 229, 341, 703, 732, 810, 885, 1455, 1517
HpyCH4III ACNGT 4 cut(s) 562, 592, 813, 1096
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 959, 1415
HpyF3I CTNAG 3 cut(s) 323, 387, 1133
HspAI GCGC 3 cut(s) 407, 1066, 1518
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 625
Kzo9I GATC 5 cut(s) 625, 796, 1126, 1270, 1497
LguI GCTCTTC 2 cut(s) 122, 1356
LmnI GCTCC 7 cut(s) 23, 194, 631, 652, 1021, 1469, 1579
Lsp1109I GCAGC 7 cut(s) 423, 511, 830, 840, 930, 949, 1000
LweI GCATC 9 cut(s) 373, 501, 536, 694, 1042, 1147, 1169, 1271, 1499
MaeI CTAG 1 cut(s) 1473
MaeIII GTNAC 2 cut(s) 562, 1431
MalI GATC 5 cut(s) 627, 798, 1128, 1272, 1499
MboI GATC 5 cut(s) 625, 796, 1126, 1270, 1497
MflI RGATCY 2 cut(s) 796, 1126
MhlI GDGCHC 4 cut(s) 134, 636, 1243, 1576
MluCI AATT 4 cut(s) 288, 751, 879, 1585
MlyI GAGTC 3 cut(s) 100, 1193, 1324
MmeI TCCRAC 1 cut(s) 172
Mph1103I ATGCAT 1 cut(s) 1162
MroNI GCCGGC 1 cut(s) 154
MseI TTAA 2 cut(s) 1076, 1584
MslI CAYNNNNRTG 3 cut(s) 465, 780, 1094
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 4 cut(s) 312, 848, 861, 1032
MvaI CCWGG 4 cut(s) 312, 848, 861, 1032
MwoI GCNNNNNNNGC 3 cut(s) 32, 959, 1415
NaeI GCCGGC 1 cut(s) 156
NcoI CCATGG 1 cut(s) 490
NdeI CATATG 1 cut(s) 766
NdeII GATC 5 cut(s) 625, 796, 1126, 1270, 1497
NgoMIV GCCGGC 1 cut(s) 154
NlaIV GGNNCC 4 cut(s) 602, 924, 1036, 1557
NmuCI GTSAC 1 cut(s) 562
NsiI ATGCAT 1 cut(s) 1162
NspI RCATGY 7 cut(s) 257, 785, 950, 1009, 1302, 1330, 1462
PaeI GCATGC 3 cut(s) 950, 1009, 1302
PaeR7I CTCGAG 1 cut(s) 1181
PaqCI CACCTGC 1 cut(s) 1226
PciSI GCTCTTC 2 cut(s) 122, 1356
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 838, 1387
PflFI GACNNNGTC 1 cut(s) 182
PleI GAGTC 3 cut(s) 100, 1192, 1323
PpsI GAGTC 3 cut(s) 100, 1192, 1323
Psp124BI GAGCTC 3 cut(s) 134, 636, 1576
Psp6I CCWGG 4 cut(s) 310, 846, 859, 1030
PspGI CCWGG 4 cut(s) 310, 846, 859, 1030
PspN4I GGNNCC 4 cut(s) 602, 924, 1036, 1557
PspPI GGNCC 3 cut(s) 340, 601, 1340
PspXI VCTCGAGB 1 cut(s) 1181
PsuI RGATCY 2 cut(s) 796, 1126
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 3 cut(s) 589, 858, 873
RsaNI GTAC 3 cut(s) 588, 857, 872
RseI CAYNNNNRTG 3 cut(s) 465, 780, 1094
SacI GAGCTC 3 cut(s) 134, 636, 1576
SapI GCTCTTC 2 cut(s) 122, 1356
SaqAI TTAA 2 cut(s) 1076, 1584
Sau3AI GATC 5 cut(s) 625, 796, 1126, 1270, 1497
Sau96I GGNCC 3 cut(s) 340, 601, 1340
SchI GAGTC 3 cut(s) 100, 1193, 1324
ScrFI CCNGG 4 cut(s) 312, 848, 861, 1032
SduI GDGCHC 4 cut(s) 134, 636, 1243, 1576
SfaNI GCATC 9 cut(s) 373, 501, 536, 694, 1042, 1147, 1169, 1271, 1499
Sfr274I CTCGAG 1 cut(s) 1181
SinI GGWCC 2 cut(s) 601, 1340
SlaI CTCGAG 1 cut(s) 1181
SmiMI CAYNNNNRTG 3 cut(s) 465, 780, 1094
SmlI CTYRAG 4 cut(s) 746, 938, 1181, 1312
SmoI CTYRAG 4 cut(s) 746, 938, 1181, 1312
SphI GCATGC 3 cut(s) 950, 1009, 1302
Sse9I AATT 4 cut(s) 288, 751, 879, 1585
SsiI CCGC 4 cut(s) 244, 639, 951, 1426
SspMI CTAG 1 cut(s) 1473
SstI GAGCTC 3 cut(s) 134, 636, 1576
StyD4I CCNGG 4 cut(s) 310, 846, 859, 1030
StyI CCWWGG 2 cut(s) 447, 490
TaaI ACNGT 4 cut(s) 562, 592, 813, 1096
TaqI TCGA 1 cut(s) 1182
TasI AATT 4 cut(s) 288, 751, 879, 1585
TauI GCSGC 3 cut(s) 246, 953, 1429
TfiI GAWTC 2 cut(s) 838, 1387
Tru1I TTAA 2 cut(s) 1076, 1584
Tru9I TTAA 2 cut(s) 1076, 1584
TscAI CASTG 3 cut(s) 567, 628, 892
TseFI GTSAC 1 cut(s) 562
TseI GCWGC 7 cut(s) 436, 524, 828, 843, 943, 962, 1013
Tsp45I GTSAC 1 cut(s) 562
TspDTI ATGAA 4 cut(s) 27, 116, 490, 714
TspRI CASTG 3 cut(s) 567, 628, 892
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 601, 1340
XceI RCATGY 7 cut(s) 257, 785, 950, 1009, 1302, 1330, 1462
XcmI CCANNNNNNNNNTGG 5 cut(s) 544, 892, 1076, 1228, 1342
XhoI CTCGAG 1 cut(s) 1181
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 1 cut(s) 1473
Zsp2I ATGCAT 1 cut(s) 1162
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.