squalene
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SE | PF08491 | 1 - 119 | 8.1e-34 | Squalene epoxidase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 407 |
| AarI | CACCTGC | 1 cut(s) | 109 |
| Acc36I | ACCTGC | 1 cut(s) | 109 |
| AciI | CCGC | 2 cut(s) | 296, 319 |
| AclWI | GGATC | 2 cut(s) | 72, 158 |
| AcoI | YGGCCR | 1 cut(s) | 316 |
| AgsI | TTSAA | 1 cut(s) | 122 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 180, 212 |
| AluBI | AGCT | 1 cut(s) | 38 |
| AluI | AGCT | 1 cut(s) | 38 |
| AlwI | GGATC | 2 cut(s) | 72, 158 |
| AoxI | GGCC | 1 cut(s) | 316 |
| ApeKI | GCWGC | 1 cut(s) | 390 |
| AspS9I | GGNCC | 1 cut(s) | 233 |
| AsuC2I | CCSGG | 1 cut(s) | 62 |
| AsuHPI | GGTGA | 3 cut(s) | 150, 333, 425 |
| AvaII | GGWCC | 1 cut(s) | 233 |
| BbvI | GCAGC | 1 cut(s) | 402 |
| BccI | CCATC | 1 cut(s) | 311 |
| BcnI | CCSGG | 1 cut(s) | 62 |
| BfuAI | ACCTGC | 1 cut(s) | 109 |
| BglI | GCCNNNNNGGC | 1 cut(s) | 216 |
| BisI | GCNGC | 2 cut(s) | 319, 391 |
| BlsI | GCNGC | 2 cut(s) | 320, 392 |
| Bme1390I | CCNGG | 1 cut(s) | 62 |
| Bme18I | GGWCC | 1 cut(s) | 233 |
| BmgT120I | GGNCC | 1 cut(s) | 233 |
| BmrFI | CCNGG | 1 cut(s) | 62 |
| BmsI | GCATC | 5 cut(s) | 16, 85, 164, 228, 392 |
| BpuEI | CTTGAG | 1 cut(s) | 397 |
| BpuMI | CCSGG | 1 cut(s) | 62 |
| BsaAI | YACGTR | 1 cut(s) | 83 |
| BsaJI | CCNNGG | 1 cut(s) | 211 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 72, 102 |
| Bse1I | ACTGG | 1 cut(s) | 236 |
| BseDI | CCNNGG | 1 cut(s) | 211 |
| BseGI | GGATG | 1 cut(s) | 7 |
| BseNI | ACTGG | 1 cut(s) | 236 |
| BseXI | GCAGC | 1 cut(s) | 402 |
| BshFI | GGCC | 1 cut(s) | 318 |
| BsiSI | CCGG | 1 cut(s) | 61 |
| BsnI | GGCC | 1 cut(s) | 318 |
| Bsp143I | GATC | 3 cut(s) | 64, 163, 372 |
| BspACI | CCGC | 2 cut(s) | 296, 319 |
| BspANI | GGCC | 1 cut(s) | 318 |
| BspMI | ACCTGC | 1 cut(s) | 109 |
| BspPI | GGATC | 2 cut(s) | 72, 158 |
| BsrI | ACTGG | 1 cut(s) | 236 |
| BssECI | CCNNGG | 1 cut(s) | 211 |
| BssMI | GATC | 3 cut(s) | 64, 163, 372 |
| BssT1I | CCWWGG | 1 cut(s) | 211 |
| Bst4CI | ACNGT | 1 cut(s) | 34 |
| Bst6I | CTCTTC | 2 cut(s) | 249, 270 |
| BstBAI | YACGTR | 1 cut(s) | 83 |
| BstDEI | CTNAG | 1 cut(s) | 71 |
| BstF5I | GGATG | 1 cut(s) | 7 |
| BstKTI | GATC | 3 cut(s) | 67, 166, 375 |
| BstMBI | GATC | 3 cut(s) | 64, 163, 372 |
| BstMWI | GCNNNNNNNGC | 2 cut(s) | 207, 216 |
| BstNSI | RCATGY | 1 cut(s) | 355 |
| BstSCI | CCNGG | 1 cut(s) | 60 |
| BstSNI | TACGTA | 1 cut(s) | 83 |
| BstV1I | GCAGC | 1 cut(s) | 402 |
| BstX2I | RGATCY | 1 cut(s) | 64 |
| BstYI | RGATCY | 1 cut(s) | 64 |
| BsuRI | GGCC | 1 cut(s) | 318 |
| BtsCI | GGATG | 1 cut(s) | 7 |
| BtsI | GCAGTG | 1 cut(s) | 134 |
| BtsIMutI | CAGTG | 1 cut(s) | 134 |
| BveI | ACCTGC | 1 cut(s) | 109 |
| Cfr13I | GGNCC | 1 cut(s) | 233 |
| CviAII | CATG | 2 cut(s) | 92, 352 |
| CviJI | RGCY | 6 cut(s) | 38, 191, 201, 210, 318, 358 |
| CviKI_1 | RGCY | 6 cut(s) | 38, 191, 201, 210, 318, 358 |
| DdeI | CTNAG | 1 cut(s) | 71 |
| DpnI | GATC | 3 cut(s) | 66, 165, 374 |
| DpnII | GATC | 3 cut(s) | 64, 163, 372 |
| EaeI | YGGCCR | 1 cut(s) | 316 |
| Eam1104I | CTCTTC | 2 cut(s) | 249, 270 |
| EarI | CTCTTC | 2 cut(s) | 249, 270 |
| Eco105I | TACGTA | 1 cut(s) | 83 |
| Eco130I | CCWWGG | 1 cut(s) | 211 |
| Eco47I | GGWCC | 1 cut(s) | 233 |
| EcoT14I | CCWWGG | 1 cut(s) | 211 |
| ErhI | CCWWGG | 1 cut(s) | 211 |
| FaeI | CATG | 2 cut(s) | 95, 355 |
| FaiI | YATR | 7 cut(s) | 93, 229, 231, 309, 353, 395, 407 |
| FatI | CATG | 2 cut(s) | 91, 351 |
| FauNDI | CATATG | 1 cut(s) | 229 |
| Fnu4HI | GCNGC | 2 cut(s) | 319, 391 |
| Fsp4HI | GCNGC | 2 cut(s) | 319, 391 |
| GluI | GCNGC | 2 cut(s) | 319, 391 |
| HaeIII | GGCC | 1 cut(s) | 318 |
| HapII | CCGG | 1 cut(s) | 61 |
| Hin1II | CATG | 2 cut(s) | 95, 355 |
| HinfI | GANTC | 1 cut(s) | 122 |
| HpaII | CCGG | 1 cut(s) | 61 |
| HphI | GGTGA | 3 cut(s) | 150, 333, 425 |
| Hpy188I | TCNGA | 1 cut(s) | 46 |
| Hpy188III | TCNNGA | 2 cut(s) | 376, 400 |
| HpyAV | CCTTC | 3 cut(s) | 14, 348, 410 |
| HpyCH4III | ACNGT | 1 cut(s) | 34 |
| HpyCH4IV | ACGT | 1 cut(s) | 82 |
| HpyCH4V | TGCA | 4 cut(s) | 98, 111, 155, 383 |
| HpyF10VI | GCNNNNNNNGC | 2 cut(s) | 207, 216 |
| HpyF3I | CTNAG | 1 cut(s) | 71 |
| HpySE526I | ACGT | 1 cut(s) | 82 |
| Hsp92II | CATG | 2 cut(s) | 95, 355 |
| Kzo9I | GATC | 3 cut(s) | 64, 163, 372 |
| LpnPI | CCDG | 9 cut(s) | 74, 114, 161, 174, 180, 205, 237, 249, 372 |
| Lsp1109I | GCAGC | 1 cut(s) | 402 |
| LweI | GCATC | 5 cut(s) | 16, 85, 164, 228, 392 |
| MaeII | ACGT | 1 cut(s) | 82 |
| MalI | GATC | 3 cut(s) | 66, 165, 374 |
| MboI | GATC | 3 cut(s) | 64, 163, 372 |
| MboII | GAAGA | 4 cut(s) | 47, 59, 236, 257 |
| MflI | RGATCY | 1 cut(s) | 64 |
| MluCI | AATT | 3 cut(s) | 112, 270, 420 |
| MnlI | CCTC | 4 cut(s) | 17, 209, 259, 273 |
| MseI | TTAA | 3 cut(s) | 14, 258, 323 |
| MspI | CCGG | 1 cut(s) | 61 |
| MspR9I | CCNGG | 1 cut(s) | 62 |
| MwoI | GCNNNNNNNGC | 2 cut(s) | 207, 216 |
| NciI | CCSGG | 1 cut(s) | 62 |
| NdeI | CATATG | 1 cut(s) | 229 |
| NdeII | GATC | 3 cut(s) | 64, 163, 372 |
| NlaIII | CATG | 2 cut(s) | 95, 355 |
| NspI | RCATGY | 1 cut(s) | 355 |
| PaqCI | CACCTGC | 1 cut(s) | 109 |
| PfeI | GAWTC | 1 cut(s) | 122 |
| PfoI | TCCNGGA | 1 cut(s) | 60 |
| PkrI | GCNGC | 2 cut(s) | 320, 392 |
| Ppu21I | YACGTR | 1 cut(s) | 83 |
| PsiI | TTATAA | 1 cut(s) | 407 |
| PspPI | GGNCC | 1 cut(s) | 233 |
| PsuI | RGATCY | 1 cut(s) | 64 |
| SaqAI | TTAA | 3 cut(s) | 14, 258, 323 |
| SatI | GCNGC | 2 cut(s) | 319, 391 |
| Sau3AI | GATC | 3 cut(s) | 64, 163, 372 |
| Sau96I | GGNCC | 1 cut(s) | 233 |
| ScrFI | CCNGG | 1 cut(s) | 62 |
| SetI | ASST | 6 cut(s) | 40, 85, 103, 120, 163, 346 |
| SfaNI | GCATC | 5 cut(s) | 16, 85, 164, 228, 392 |
| SinI | GGWCC | 1 cut(s) | 233 |
| SmlI | CTYRAG | 1 cut(s) | 376 |
| SmoI | CTYRAG | 1 cut(s) | 376 |
| SnaBI | TACGTA | 1 cut(s) | 83 |
| Sse9I | AATT | 3 cut(s) | 112, 270, 420 |
| SsiI | CCGC | 2 cut(s) | 296, 319 |
| StyD4I | CCNGG | 1 cut(s) | 60 |
| StyI | CCWWGG | 1 cut(s) | 211 |
| TaaI | ACNGT | 1 cut(s) | 34 |
| TaiI | ACGT | 1 cut(s) | 85 |
| TaqI | TCGA | 1 cut(s) | 367 |
| TasI | AATT | 3 cut(s) | 112, 270, 420 |
| TauI | GCSGC | 1 cut(s) | 321 |
| TfiI | GAWTC | 1 cut(s) | 122 |
| Tru1I | TTAA | 3 cut(s) | 14, 258, 323 |
| Tru9I | TTAA | 3 cut(s) | 14, 258, 323 |
| TscAI | CASTG | 1 cut(s) | 141 |
| TseI | GCWGC | 1 cut(s) | 390 |
| TspGWI | ACGGA | 1 cut(s) | 321 |
| TspRI | CASTG | 1 cut(s) | 141 |
| VpaK11BI | GGWCC | 1 cut(s) | 233 |
| XceI | RCATGY | 1 cut(s) | 355 |