FvH4_2g02652

Squalene monooxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
OG0000108
Physical Location & Seq
Forward (+)
2117018 .. 2120429
3412 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g02652.t3

Sequence Viewer

Length: 1554 bp
ATGGTGTCGTACGAGTATGTTCTGGGTGGAGTTCTGGCTTCTCTGCTGGCCTCTGTTTTCATCATGATTATTAATAGCGCTAGAAAGGTGGAGGGGGTGGAAAAGAGTAGTAATGGGTTTGTGAGGATGCCGGAAAACGATGAGGAGAAAGGTACCGACGTCGTCATTGTCGGCGCCGGAGTTGCCGGTGCGGCTCTTGCGTACACTCTTGCCAAGGAAGGACGTCGTGTACATGTCATCGAAAGAGACTTGAGTGAGCCGGACAGAATTGTTGGTGAGCTTTTGCAGCCTGGGGGTTATCTTAAGTTGATTGAGTTGGGTCTTGAGGACTGTGCAAATGAATCCATTGATGCTCAGAAGGTGTTTGGTTATGCTCTCTACAAAGATGGGAAGGATACAAAACTTTCTTATCCCTTGGAAAAGTACAGTTCGGATATAGCTGGGAGAAGTTTCCACAATGGCCGTTTCATCCAAAGAATGCGTGAAAAGGCAGCAACACTTTCAAATGTGAAATTGGAACAAGGGACGGTGACAACACTAATTGAAGAAAAGGGCACTATCAAAGGAGTGATTTACAAGAACAAATCTGGAGAGGAGTTCAGAACATATGCTCCACTAACAATCGTGTGCGATGGCTGCTTTTCAAATCTGCGCAAAAATCTCAGTGCTCCAAAGGTTGAAAGTCCCTCTTGTTTTGTTGGTTTGGTATTGGAGAACTGTGACCTTCCACATGCAAATCATGGTCATGTGATTTTGGGAGACCCTTCACCTGTCCTGTTTTATCCCATCAGTAGCACAGAGATTCGTTGTTTGGTTGATATACCTGGAACAAAAGTTCCTTCTGTAGCTAATGGTGAAATGGCCAAGTATTTGAAAACCGTGGTGGCTCCTCAGATTCCTCCTCAGCTCTACAATTCTTTTATAGCTGCAATTGACAAGGGAAACATCAGGTCCATGCAAAACAAAAGCATGGCTGCAAATCCGCTTCCCACTCCTGGTGCACTTTTGTTGGGGGATTCATTCAACATGAGGCATCCCTTAACCGGAGGAGGGATGACTGTGGCTCTTTCAGACATCGTTCTTCTTCGTGATCTTCTTAGACCCCTACATGATCTCAATGATGCATCTGCATTGTCCCATTACCTCGAATCATTCTACACATTGCGCAAGCCTGTGTCATCTACCATAAACACATTGGCAGGTGCCTTGTACAAGGTGTTTTGTGCTTCGCCTGATCCAGCAAGACAGGAAATGCGTGAAGCATGTTTCGGTTATTTGAGCCTTGGAGGTATCTGTTCGTATGGACCAGTTTCTCTTCTGTCTGGTCTTAACCCTCGTCCACTGCACCTGTTTCTCCATTTTTTTGCTGTTGCTGTCTATGGTGTCGGGCGCTTGATGCTTCCATTCCCTTCTCCTCAACGCACATGGCTTGGGATTAGACTGATCCTGAGTGCATCAGGGATCATATTTCCCATCATAAAGGGTGAAGGAGTTAGACAGATGTTCTTTCCTACAACAATACCAGCATATTACAGAGCTCCTCCTGTTCATTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

518

Amino Acids

56.33

Weight (kDa)

8.42

Isoelectric Point (pI)

39.83

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 2 - 208 2e-09 FAD binding domain
SE PF08491 45 - 313 6.3e-118 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1190
AatII GACGTC 2 cut(s) 162, 226
Acc16I TGCGCA 2 cut(s) 653, 1166
Acc36I ACCTGC 1 cut(s) 1190
Acc65I GGTACC 1 cut(s) 152
AccB1I GGYRCC 3 cut(s) 152, 173, 1202
AciI CCGC 2 cut(s) 191, 983
AclWI GGATC 3 cut(s) 1229, 1438, 1469
AcoI YGGCCR 2 cut(s) 460, 861
AcyI GRCGYC 3 cut(s) 159, 174, 223
AfaI GTAC 6 cut(s) 11, 154, 203, 231, 425, 1211
AfeI AGCGCT 1 cut(s) 79
AfiI CCNNNNNNNGG 3 cut(s) 995, 1043, 1050
AflII CTTAAG 1 cut(s) 302
AflIII ACRYGT 1 cut(s) 232
AgsI TTSAA 6 cut(s) 504, 545, 645, 680, 874, 1024
AjnI CCWGG 3 cut(s) 289, 823, 994
AloI GAACNNNNNNTCC 6 cut(s) 595, 627, 819, 820, 851, 852
AluBI AGCT 6 cut(s) 280, 440, 848, 907, 926, 1538
AluI AGCT 6 cut(s) 280, 440, 848, 907, 926, 1538
Alw21I GWGCWC 3 cut(s) 670, 1003, 1540
Alw26I GTCTC 2 cut(s) 240, 753
Alw44I GTGCAC 1 cut(s) 999
AlwI GGATC 3 cut(s) 1229, 1438, 1469
Aor51HI AGCGCT 1 cut(s) 79
AoxI GGCC 3 cut(s) 48, 460, 861
ApaLI GTGCAC 1 cut(s) 999
ApeKI GCWGC 5 cut(s) 286, 491, 636, 926, 974
AseI ATTAAT 1 cut(s) 72
Asp718I GGTACC 1 cut(s) 152
AspLEI GCGC 5 cut(s) 80, 176, 654, 1167, 1392
AspS9I GGNCC 2 cut(s) 951, 1304
AsuHPI GGTGA 5 cut(s) 287, 541, 759, 866, 1496
AvaII GGWCC 2 cut(s) 951, 1304
BaeGI GKGCMC 2 cut(s) 557, 1003
BaeI ACNNNNGTAYC 2 cut(s) 144, 177
BalI TGGCCA 1 cut(s) 863
BanI GGYRCC 3 cut(s) 152, 173, 1202
BanII GRGCYC 1 cut(s) 1540
Bbv12I GWGCWC 3 cut(s) 670, 1003, 1540
BbvCI CCTCAGC 1 cut(s) 903
BbvI GCAGC 5 cut(s) 298, 503, 623, 913, 961
BccI CCATC 4 cut(s) 380, 626, 794, 1481
BceAI ACGGC 1 cut(s) 447
BciT130I CCWGG 3 cut(s) 291, 825, 996
BciVI GTATCC 1 cut(s) 388
BcoDI GTCTC 2 cut(s) 240, 753
BfaI CTAG 1 cut(s) 81
BfmI CTRYAG 1 cut(s) 843
BfoI RGCGCY 3 cut(s) 81, 177, 1393
BfrI CTTAAG 1 cut(s) 302
BfuAI ACCTGC 1 cut(s) 1190
BfuI GTATCC 1 cut(s) 388
BglI GCCNNNNNGGC 1 cut(s) 191
BisI GCNGC 6 cut(s) 192, 287, 492, 637, 927, 975
BlsI GCNGC 6 cut(s) 193, 288, 493, 638, 928, 976
Bme1390I CCNGG 3 cut(s) 291, 825, 996
Bme18I GGWCC 2 cut(s) 951, 1304
BmgT120I GGNCC 2 cut(s) 951, 1304
BmiI GGNNCC 4 cut(s) 154, 175, 888, 1204
BmrFI CCNGG 3 cut(s) 291, 825, 996
BmsI GCATC 7 cut(s) 117, 340, 1042, 1111, 1133, 1386, 1463
BpmI CTGGAG 1 cut(s) 609
Bpu10I CCTNAGC 1 cut(s) 903
BpuEI CTTGAG 2 cut(s) 271, 344
BsaHI GRCGYC 3 cut(s) 159, 174, 223
BsaI GGTCTC 1 cut(s) 753
BsaJI CCNNGG 5 cut(s) 213, 290, 414, 879, 1282
BsaWI WCCGGW 1 cut(s) 1043
BsaXI ACNNNNNCTCC 2 cut(s) 595, 625
Bsc4I CCNNNNNNNGG 3 cut(s) 995, 1043, 1050
Bse118I RCCGGY 1 cut(s) 185
Bse1I ACTGG 1 cut(s) 1307
Bse3DI GCAATG 1 cut(s) 1160
BseBI CCWGG 3 cut(s) 291, 825, 996
BseDI CCNNGG 5 cut(s) 213, 290, 414, 879, 1282
BseGI GGATG 4 cut(s) 132, 468, 1033, 1059
BseLI CCNNNNNNNGG 3 cut(s) 995, 1043, 1050
BseMI GCAATG 1 cut(s) 1160
BseMII CTCAG 5 cut(s) 368, 676, 905, 917, 1439
BseNI ACTGG 1 cut(s) 1307
BseRI GAGGAG 7 cut(s) 158, 608, 879, 891, 1062, 1404, 1530
BseSI GKGCMC 2 cut(s) 557, 1003
BseXI GCAGC 5 cut(s) 298, 503, 623, 913, 961
BseYI CCCAGC 1 cut(s) 440
BsgI GTGCAG 1 cut(s) 1328
BshFI GGCC 3 cut(s) 50, 462, 863
BshNI GGYRCC 3 cut(s) 152, 173, 1202
BsiHKAI GWGCWC 3 cut(s) 670, 1003, 1540
BsiSI CCGG 5 cut(s) 131, 177, 186, 260, 1044
BsiWI CGTACG 1 cut(s) 9
BslFI GGGAC 3 cut(s) 538, 669, 1120
BslI CCNNNNNNNGG 3 cut(s) 995, 1043, 1050
BsmAI GTCTC 2 cut(s) 240, 753
BsmFI GGGAC 3 cut(s) 538, 669, 1120
BsmI GAATGC 1 cut(s) 483
BsnI GGCC 3 cut(s) 50, 462, 863
Bso31I GGTCTC 1 cut(s) 753
Bsp1286I GDGCHC 4 cut(s) 557, 670, 1003, 1540
Bsp1407I TGTACA 2 cut(s) 229, 1209
Bsp143I GATC 5 cut(s) 1090, 1111, 1234, 1443, 1461
BspACI CCGC 2 cut(s) 191, 983
BspANI GGCC 3 cut(s) 50, 462, 863
BspCNI CTCAG 5 cut(s) 367, 675, 904, 916, 1440
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 4 cut(s) 154, 175, 888, 1204
BspMI ACCTGC 1 cut(s) 1190
BspPI GGATC 3 cut(s) 1229, 1438, 1469
BspT107I GGYRCC 3 cut(s) 152, 173, 1202
BspTI CTTAAG 1 cut(s) 302
BspTNI GGTCTC 1 cut(s) 753
BsrDI GCAATG 1 cut(s) 1160
BsrFI RCCGGY 1 cut(s) 185
BsrGI TGTACA 2 cut(s) 229, 1209
BsrI ACTGG 1 cut(s) 1307
BssAI RCCGGY 1 cut(s) 185
BssECI CCNNGG 5 cut(s) 213, 290, 414, 879, 1282
BssMI GATC 5 cut(s) 1090, 1111, 1234, 1443, 1461
BssNI GRCGYC 3 cut(s) 159, 174, 223
BssT1I CCWWGG 3 cut(s) 213, 414, 1282
Bst2UI CCWGG 3 cut(s) 291, 825, 996
Bst4CI ACNGT 6 cut(s) 332, 428, 529, 719, 880, 1060
Bst6I CTCTTC 1 cut(s) 1320
BstACI GRCGYC 3 cut(s) 159, 174, 223
BstAFI CTTAAG 1 cut(s) 302
BstAUI TGTACA 2 cut(s) 229, 1209
BstC8I GCNNGC 2 cut(s) 48, 1169
BstDEI CTNAG 6 cut(s) 354, 662, 891, 903, 1097, 1448
BstDSI CCRYGG 1 cut(s) 879
BstF5I GGATG 4 cut(s) 132, 468, 1033, 1059
BstH2I RGCGCY 3 cut(s) 81, 177, 1393
BstHHI GCGC 5 cut(s) 80, 176, 654, 1167, 1392
BstKTI GATC 5 cut(s) 1093, 1114, 1237, 1446, 1464
BstMAI GTCTC 2 cut(s) 240, 753
BstMBI GATC 5 cut(s) 1090, 1111, 1234, 1443, 1461
BstMWI GCNNNNNNNGC 6 cut(s) 182, 191, 197, 286, 636, 1396
BstNI CCWGG 3 cut(s) 291, 825, 996
BstNSI RCATGY 3 cut(s) 236, 734, 1266
BstSCI CCNGG 3 cut(s) 289, 823, 994
BstSFI CTRYAG 1 cut(s) 843
BstSLI GKGCMC 2 cut(s) 557, 1003
BstV1I GCAGC 5 cut(s) 298, 503, 623, 913, 961
BsuI GTATCC 1 cut(s) 388
BsuRI GGCC 3 cut(s) 50, 462, 863
BtgI CCRYGG 1 cut(s) 879
BtgZI GCGATG 1 cut(s) 645
BtsCI GGATG 4 cut(s) 132, 468, 1033, 1059
BtsI GCAGTG 1 cut(s) 1340
BtsIMutI CAGTG 2 cut(s) 670, 1340
BveI ACCTGC 1 cut(s) 1190
Cac8I GCNNGC 2 cut(s) 48, 1169
CciI TCATGA 1 cut(s) 63
CfoI GCGC 5 cut(s) 80, 176, 654, 1167, 1392
Cfr10I RCCGGY 1 cut(s) 185
Cfr13I GGNCC 2 cut(s) 951, 1304
Csp6I GTAC 6 cut(s) 10, 153, 202, 230, 424, 1210
CviQI GTAC 6 cut(s) 10, 153, 202, 230, 424, 1210
DdeI CTNAG 6 cut(s) 354, 662, 891, 903, 1097, 1448
DinI GGCGCC 1 cut(s) 175
DpnI GATC 5 cut(s) 1092, 1113, 1236, 1445, 1463
DpnII GATC 5 cut(s) 1090, 1111, 1234, 1443, 1461
EaeI YGGCCR 2 cut(s) 460, 861
Eam1104I CTCTTC 1 cut(s) 1320
EarI CTCTTC 1 cut(s) 1320
Ecl136II GAGCTC 1 cut(s) 1538
Eco130I CCWWGG 3 cut(s) 213, 414, 1282
Eco24I GRGCYC 1 cut(s) 1540
Eco31I GGTCTC 1 cut(s) 753
Eco47I GGWCC 2 cut(s) 951, 1304
Eco47III AGCGCT 1 cut(s) 79
Eco53kI GAGCTC 1 cut(s) 1538
EcoICRI GAGCTC 1 cut(s) 1538
EcoRII CCWGG 3 cut(s) 289, 823, 994
EcoT14I CCWWGG 3 cut(s) 213, 414, 1282
EcoT22I ATGCAT 1 cut(s) 1126
EcoT38I GRGCYC 1 cut(s) 1540
EgeI GGCGCC 1 cut(s) 175
EheI GGCGCC 1 cut(s) 175
ErhI CCWWGG 3 cut(s) 213, 414, 1282
FalI AAGNNNNNCTT 2 cut(s) 673, 705
FaqI GGGAC 3 cut(s) 538, 669, 1120
FauNDI CATATG 1 cut(s) 607
Fnu4HI GCNGC 6 cut(s) 192, 287, 492, 637, 927, 975
FokI GGATG 4 cut(s) 139, 455, 1020, 1066
FriOI GRGCYC 1 cut(s) 1540
Fsp4HI GCNGC 6 cut(s) 192, 287, 492, 637, 927, 975
FspBI CTAG 1 cut(s) 81
FspI TGCGCA 2 cut(s) 653, 1166
GlaI GCGC 5 cut(s) 79, 175, 653, 1166, 1391
GluI GCNGC 6 cut(s) 192, 287, 492, 637, 927, 975
GsaI CCCAGC 1 cut(s) 444
GsuI CTGGAG 1 cut(s) 609
HaeII RGCGCY 3 cut(s) 81, 177, 1393
HaeIII GGCC 3 cut(s) 50, 462, 863
HapII CCGG 5 cut(s) 131, 177, 186, 260, 1044
HhaI GCGC 5 cut(s) 80, 176, 654, 1167, 1392
Hin1I GRCGYC 3 cut(s) 159, 174, 223
Hin6I GCGC 5 cut(s) 78, 174, 652, 1165, 1390
HinP1I GCGC 5 cut(s) 78, 174, 652, 1165, 1390
HinfI GANTC 5 cut(s) 341, 802, 895, 1016, 1148
HpaII CCGG 5 cut(s) 131, 177, 186, 260, 1044
HphI GGTGA 5 cut(s) 287, 541, 759, 866, 1496
Hpy166II GTNNAC 4 cut(s) 204, 230, 1001, 1340
Hpy188I TCNGA 5 cut(s) 357, 433, 602, 894, 1072
Hpy188III TCNNGA 5 cut(s) 64, 323, 588, 1088, 1447
Hpy8I GTNNAC 4 cut(s) 204, 230, 1001, 1340
Hpy99I CGWCG 3 cut(s) 161, 164, 228
HpyAV CCTTC 8 cut(s) 212, 352, 385, 734, 774, 849, 1419, 1481
HpyCH4III ACNGT 6 cut(s) 332, 428, 529, 719, 880, 1060
HpyCH4IV ACGT 2 cut(s) 159, 223
HpyF10VI GCNNNNNNNGC 6 cut(s) 182, 191, 197, 286, 636, 1396
HpyF3I CTNAG 6 cut(s) 354, 662, 891, 903, 1097, 1448
HpySE526I ACGT 2 cut(s) 159, 223
Hsp92I GRCGYC 3 cut(s) 159, 174, 223
HspAI GCGC 5 cut(s) 78, 174, 652, 1165, 1390
KasI GGCGCC 1 cut(s) 173
KpnI GGTACC 1 cut(s) 156
Kzo9I GATC 5 cut(s) 1090, 1111, 1234, 1443, 1461
LmnI GCTCC 4 cut(s) 616, 673, 892, 1543
Lsp1109I GCAGC 5 cut(s) 298, 503, 623, 913, 961
LweI GCATC 7 cut(s) 117, 340, 1042, 1111, 1133, 1386, 1463
MaeI CTAG 1 cut(s) 81
MaeII ACGT 2 cut(s) 159, 223
MaeIII GTNAC 2 cut(s) 529, 719
MalI GATC 5 cut(s) 1092, 1113, 1236, 1445, 1463
MboI GATC 5 cut(s) 1090, 1111, 1234, 1443, 1461
MboII GAAGA 5 cut(s) 557, 1073, 1076, 1085, 1307
MfeI CAATTG 1 cut(s) 930
MhlI GDGCHC 4 cut(s) 557, 670, 1003, 1540
MlsI TGGCCA 1 cut(s) 863
MluCI AATT 5 cut(s) 267, 512, 540, 913, 930
MluNI TGGCCA 1 cut(s) 863
Mly113I GGCGCC 1 cut(s) 174
Mox20I TGGCCA 1 cut(s) 863
Mph1103I ATGCAT 1 cut(s) 1126
MscI TGGCCA 1 cut(s) 863
MseI TTAA 4 cut(s) 72, 303, 1040, 1329
MslI CAYNNNNRTG 1 cut(s) 744
Msp20I TGGCCA 1 cut(s) 863
MspCI CTTAAG 1 cut(s) 302
MspI CCGG 5 cut(s) 131, 177, 186, 260, 1044
MspR9I CCNGG 3 cut(s) 291, 825, 996
MunI CAATTG 1 cut(s) 930
Mva1269I GAATGC 1 cut(s) 483
MvaI CCWGG 3 cut(s) 291, 825, 996
MwoI GCNNNNNNNGC 6 cut(s) 182, 191, 197, 286, 636, 1396
NarI GGCGCC 1 cut(s) 174
NdeI CATATG 1 cut(s) 607
NdeII GATC 5 cut(s) 1090, 1111, 1234, 1443, 1461
NlaIV GGNNCC 4 cut(s) 154, 175, 888, 1204
NmuCI GTSAC 2 cut(s) 529, 719
NsbI TGCGCA 2 cut(s) 653, 1166
NsiI ATGCAT 1 cut(s) 1126
NspI RCATGY 3 cut(s) 236, 734, 1266
PagI TCATGA 1 cut(s) 63
PaqCI CACCTGC 1 cut(s) 1190
PciI ACATGT 1 cut(s) 232
PctI GAATGC 1 cut(s) 483
PfeI GAWTC 5 cut(s) 341, 802, 895, 1016, 1148
Pfl23II CGTACG 1 cut(s) 9
PflFI GACNNNGTC 1 cut(s) 161
PkrI GCNGC 6 cut(s) 193, 288, 493, 638, 928, 976
PluTI GGCGCC 1 cut(s) 177
PscI ACATGT 1 cut(s) 232
PshBI ATTAAT 1 cut(s) 72
Psp124BI GAGCTC 1 cut(s) 1540
Psp6I CCWGG 3 cut(s) 289, 823, 994
PspFI CCCAGC 1 cut(s) 440
PspGI CCWGG 3 cut(s) 289, 823, 994
PspLI CGTACG 1 cut(s) 9
PspN4I GGNNCC 4 cut(s) 154, 175, 888, 1204
PspPI GGNCC 2 cut(s) 951, 1304
PsyI GACNNNGTC 1 cut(s) 161
RsaI GTAC 6 cut(s) 11, 154, 203, 231, 425, 1211
RsaNI GTAC 6 cut(s) 10, 153, 202, 230, 424, 1210
RseI CAYNNNNRTG 1 cut(s) 744
SacI GAGCTC 1 cut(s) 1540
SaqAI TTAA 4 cut(s) 72, 303, 1040, 1329
SatI GCNGC 6 cut(s) 192, 287, 492, 637, 927, 975
Sau3AI GATC 5 cut(s) 1090, 1111, 1234, 1443, 1461
Sau96I GGNCC 2 cut(s) 951, 1304
ScrFI CCNGG 3 cut(s) 291, 825, 996
SduI GDGCHC 4 cut(s) 557, 670, 1003, 1540
SfaNI GCATC 7 cut(s) 117, 340, 1042, 1111, 1133, 1386, 1463
SfcI CTRYAG 1 cut(s) 843
SfoI GGCGCC 1 cut(s) 175
SinI GGWCC 2 cut(s) 951, 1304
SmiMI CAYNNNNRTG 1 cut(s) 744
SmlI CTYRAG 3 cut(s) 250, 302, 323
SmoI CTYRAG 3 cut(s) 250, 302, 323
Sse9I AATT 5 cut(s) 267, 512, 540, 913, 930
SsiI CCGC 2 cut(s) 191, 983
SspDI GGCGCC 1 cut(s) 173
SspMI CTAG 1 cut(s) 81
SstI GAGCTC 1 cut(s) 1540
StyD4I CCNGG 3 cut(s) 289, 823, 994
StyI CCWWGG 3 cut(s) 213, 414, 1282
TaaI ACNGT 6 cut(s) 332, 428, 529, 719, 880, 1060
TaiI ACGT 2 cut(s) 162, 226
TaqI TCGA 2 cut(s) 240, 1146
TasI AATT 5 cut(s) 267, 512, 540, 913, 930
TatI WGTACW 3 cut(s) 229, 423, 1209
TauI GCSGC 1 cut(s) 194
TfiI GAWTC 5 cut(s) 341, 802, 895, 1016, 1148
Tru1I TTAA 4 cut(s) 72, 303, 1040, 1329
Tru9I TTAA 4 cut(s) 72, 303, 1040, 1329
TscAI CASTG 2 cut(s) 670, 1347
TseFI GTSAC 2 cut(s) 529, 719
TseI GCWGC 5 cut(s) 286, 491, 636, 926, 974
Tsp45I GTSAC 2 cut(s) 529, 719
TspDTI ATGAA 5 cut(s) 49, 354, 457, 1008, 1538
TspRI CASTG 2 cut(s) 670, 1347
Tth111I GACNNNGTC 1 cut(s) 161
Vha464I CTTAAG 1 cut(s) 302
VneI GTGCAC 1 cut(s) 999
VpaK11BI GGWCC 2 cut(s) 951, 1304
VspI ATTAAT 1 cut(s) 72
XceI RCATGY 3 cut(s) 236, 734, 1266
XcmI CCANNNNNNNNNTGG 1 cut(s) 1192
XspI CTAG 1 cut(s) 81
ZraI GACGTC 2 cut(s) 160, 224
Zsp2I ATGCAT 1 cut(s) 1126
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.