MD07G1041700.v1.1

Squalene monooxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000108
Physical Location & Seq
Forward (+)
3471685 .. 3474466
2782 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1041700.v1.1.491

Sequence Viewer

Length: 1644 bp
ATGGTTTACGAGTATGTTCTTGCTGGTGTCTTGGTTTCTCTGTTGAGTTCTGTTTTCTTCGTCATCATAAACACCACTTTCAGCGAAAAGAAGAAGGACGATGTCGCAAACGTGTCGGCAACCGGTGTTTTTCTTGCGCCCGAGATTGAGAAAAGTACGGACGTCGTCATTGTCGGTGCTGGAGTTGCTGGTGCTGCTCTTGCTTACACTCTTGGCAAGGAAGGACGGCGTGTACATGTGATCGAAAGGGACCTCAACGAGCCAGACAGAATTGTTGGTGAACTATTGCAGCCTGGAGGCTATCTCAAGTTGATTGAATTAGGTCTTGAAGATTGTGCTAATGAGTCCATTGATGCTCAGAAAGTGTTTGGTTATGCTCTTTACAAAAATGGCAATGACACGAAATTGTCTTATCCCTTGGAAACATACAGTTCAGATATCGCTGGAAGAAGTTTCCACAATGGACGTTTCATCCAAAGGATGCGCGGAAGGGCTTCAACTCTTTCAAAGTACGTAAAATCCATTCTCCTTTGGAATATGATAAGAAGATCATCTTGTTCGGTTGTGAAATTGGAACAAGGAACAGTGACAACACTAATTGAAGAAAAGGGCACCATCAAAGGAGTGATGTACAAGAACAAGGCCGGAGAGGAGATGAGAACATATGCTCCGCTAACAATAGTGTGTGATGGATGCTTTTCAAATCTGCGTCGCTCCATCTCTACTCCAAATATTGAAAATCCGTCTTGCTTCGTCGGAATGATCTTGGAGAACTGTGAGCTTCCTCATGCAAATCATGGACATGTGAGTCTGGGAGACCCTTCACCCATCCTGTTTTATCCTATCAGTAGTACCGAGGTTCGTTGTTTGGTAGATGTTCCCGGCACAAAAGTACCTTCAGTAGCTAATGGCGAAATGGCTCAGTATTTGAAGACTGCCGTGGCTCCTCAGGTTCCCCATCAACTCTTAAAGGCTTTTCTAGCAGCGGTTGATAAAGGAATCATCAGAACAATGCAAAACAAAAGCATGCCGGCTGCTCCACAGCCCACTCCTGGTGCAATTTTACTGGGGGATGCTTTCAACATGAGACATCCTTTAACCGGAGGAGGAATGACTGTGGCTCTATCTGACATTGTTCTTCTCAGGGATCTTCTGAGACCACTAAGTGATTTCAACGATGCACCTGCCTTGTGTGATTATCTCGAATCGTTCTACACACTCCGCAAGCCTGTGTCTTCTACCATAAACACATTAGCCGGTGCCCTTTACAAGGTGTTCTGTGCATCGCCCAACCCCGCACGACAAGAAATGCGTGAAGCATGTTTTGACTATTTGAGCCTTGGAGGCATCTGTTCAAATGGACCAATATCTCTACTCTCAGGTCTTAACCCTCGTCCGATCAGCCTTTTTCTCCATTTCTTTGCTGTGGCTGTGTATGGAGTCGGCCGCTTAATGATTCCATTCCCGACGCCGAAACGGATGTGGTTGGGGGCTAGATTGATCTTGAGTGCATCAGGAATCATATTCCCAATTATTAAAGCTGAAGGAGTTAGAAAGATGTTCTTTCCTGCAACAATGCCAGCATATTACAGAGTACCTCCAGTTCACAGACGAATCAAAACAAGCACGAAGCATGTATGTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

548

Amino Acids

59.81

Weight (kDa)

9.04

Isoelectric Point (pI)

44.59

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 53 - 382 1.9e-15 FAD binding domain
DAO PF01266 54 - 84 1.1e-06 FAD dependent oxidoreductase
SE PF08491 223 - 495 2.3e-118 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1192
AasI GACNNNNNNGTC 1 cut(s) 807
AatII GACGTC 1 cut(s) 165
Acc36I ACCTGC 1 cut(s) 1192
AccB1I GGYRCC 2 cut(s) 611, 1259
AccII CGCG 1 cut(s) 486
AciI CCGC 6 cut(s) 486, 671, 986, 1222, 1296, 1447
AclWI GGATC 1 cut(s) 1155
AcoI YGGCCR 1 cut(s) 1444
AcuI CTGAAG 2 cut(s) 882, 1563
AcyI GRCGYC 2 cut(s) 162, 1469
AdeI CACNNNGTG 1 cut(s) 1166
AfaI GTAC 7 cut(s) 157, 234, 512, 632, 853, 894, 1596
AfiI CCNNNNNNNGG 3 cut(s) 1052, 1100, 1270
AflIII ACRYGT 3 cut(s) 111, 235, 802
AgeI ACCGGT 1 cut(s) 122
AjnI CCWGG 2 cut(s) 292, 1051
AloI GAACNNNNNNTCC 2 cut(s) 652, 684
AluBI AGCT 3 cut(s) 781, 905, 1541
AluI AGCT 3 cut(s) 781, 905, 1541
Alw26I GTCTC 3 cut(s) 810, 1081, 1150
AlwI GGATC 1 cut(s) 1155
Ama87I CYCGRG 1 cut(s) 140
AoxI GGCC 2 cut(s) 642, 1444
ApeKI GCWGC 4 cut(s) 194, 289, 983, 1034
AsiGI ACCGGT 1 cut(s) 122
Asp700I GAANNNNTTC 1 cut(s) 493
AspLEI GCGC 2 cut(s) 139, 486
AspS9I GGNCC 2 cut(s) 250, 1361
AsuC2I CCSGG 1 cut(s) 882
AsuHPI GGTGA 2 cut(s) 290, 816
AvaI CYCGRG 1 cut(s) 140
AvaII GGWCC 2 cut(s) 250, 1361
AxyI CCTNAGG 1 cut(s) 948
BaeGI GKGCMC 2 cut(s) 614, 1264
BaeI ACNNNNGTAYC 2 cut(s) 876, 909
BanI GGYRCC 2 cut(s) 611, 1259
BbsI GAAGAC 2 cut(s) 938, 1227
BbvI GCAGC 4 cut(s) 181, 301, 995, 1021
BccI CCATC 5 cut(s) 623, 683, 725, 836, 966
BceAI ACGGC 2 cut(s) 242, 923
BcgI CGANNNNNNTGC 4 cut(s) 96, 130, 1166, 1200
BciT130I CCWGG 2 cut(s) 294, 1053
BcnI CCSGG 1 cut(s) 882
BcoDI GTCTC 3 cut(s) 810, 1081, 1150
BfaI CTAG 2 cut(s) 980, 1494
BfuAI ACCTGC 1 cut(s) 1192
BglI GCCNNNNNGGC 1 cut(s) 1344
BisI GCNGC 5 cut(s) 195, 290, 984, 1035, 1447
BlsI GCNGC 5 cut(s) 196, 291, 985, 1036, 1448
Bme1390I CCNGG 3 cut(s) 294, 882, 1053
Bme18I GGWCC 2 cut(s) 250, 1361
BmeT110I CYCGRG 1 cut(s) 140
BmgT120I GGNCC 2 cut(s) 250, 1361
BmiI GGNNCC 5 cut(s) 251, 613, 945, 954, 1261
BmrFI CCNGG 3 cut(s) 294, 882, 1053
BmrI ACTGGG 1 cut(s) 1076
BmsI GCATC 8 cut(s) 343, 471, 683, 1063, 1168, 1292, 1356, 1520
BmuI ACTGGG 1 cut(s) 1076
BpiI GAAGAC 2 cut(s) 938, 1227
BplI GAGNNNNNCTC 2 cut(s) 288, 320
BpmI CTGGAG 3 cut(s) 201, 315, 1584
BpuEI CTTGAG 2 cut(s) 290, 1525
BpuMI CCSGG 1 cut(s) 882
BsaAI YACGTR 1 cut(s) 514
BsaHI GRCGYC 2 cut(s) 162, 1469
BsaI GGTCTC 2 cut(s) 810, 1150
BsaJI CCNNGG 4 cut(s) 417, 855, 939, 1339
BsaWI WCCGGW 2 cut(s) 122, 1100
BsaXI ACNNNNNCTCC 2 cut(s) 652, 682
Bsc4I CCNNNNNNNGG 3 cut(s) 1052, 1100, 1270
Bse118I RCCGGY 3 cut(s) 122, 1030, 1256
Bse1I ACTGG 2 cut(s) 1071, 1601
Bse21I CCTNAGG 1 cut(s) 948
Bse3DI GCAATG 1 cut(s) 400
BseBI CCWGG 2 cut(s) 294, 1053
BseDI CCNNGG 4 cut(s) 417, 855, 939, 1339
BseGI GGATG 7 cut(s) 471, 486, 698, 828, 1078, 1090, 1485
BseLI CCNNNNNNNGG 3 cut(s) 1052, 1100, 1270
BseMI GCAATG 1 cut(s) 400
BseMII CTCAG 6 cut(s) 371, 935, 962, 1145, 1156, 1392
BseNI ACTGG 2 cut(s) 1071, 1601
BseRI GAGGAG 3 cut(s) 665, 936, 1119
BseSI GKGCMC 2 cut(s) 614, 1264
BseX3I CGGCCG 1 cut(s) 1444
BseXI GCAGC 4 cut(s) 181, 301, 995, 1021
Bsh1236I CGCG 1 cut(s) 486
Bsh1285I CGRYCG 1 cut(s) 1447
BshFI GGCC 2 cut(s) 644, 1446
BshNI GGYRCC 2 cut(s) 611, 1259
BshTI ACCGGT 1 cut(s) 122
BsiEI CGRYCG 1 cut(s) 1447
BsiHKCI CYCGRG 1 cut(s) 140
BsiSI CCGG 6 cut(s) 123, 645, 882, 1031, 1101, 1257
BslFI GGGAC 1 cut(s) 263
BslI CCNNNNNNNGG 3 cut(s) 1052, 1100, 1270
BsmAI GTCTC 3 cut(s) 810, 1081, 1150
BsmFI GGGAC 1 cut(s) 263
BsnI GGCC 2 cut(s) 644, 1446
Bso31I GGTCTC 2 cut(s) 810, 1150
BsoBI CYCGRG 1 cut(s) 140
Bsp1286I GDGCHC 2 cut(s) 614, 1264
Bsp1407I TGTACA 2 cut(s) 232, 630
Bsp143I GATC 6 cut(s) 240, 548, 762, 1147, 1398, 1500
BspACI CCGC 6 cut(s) 486, 671, 986, 1222, 1296, 1447
BspANI GGCC 2 cut(s) 644, 1446
BspCNI CTCAG 6 cut(s) 370, 934, 961, 1146, 1155, 1391
BspFNI CGCG 1 cut(s) 486
BspLI GGNNCC 5 cut(s) 251, 613, 945, 954, 1261
BspMI ACCTGC 1 cut(s) 1192
BspPI GGATC 1 cut(s) 1155
BspT107I GGYRCC 2 cut(s) 611, 1259
BspTNI GGTCTC 2 cut(s) 810, 1150
BsrDI GCAATG 1 cut(s) 400
BsrFI RCCGGY 3 cut(s) 122, 1030, 1256
BsrGI TGTACA 2 cut(s) 232, 630
BsrI ACTGG 2 cut(s) 1071, 1601
BssAI RCCGGY 3 cut(s) 122, 1030, 1256
BssECI CCNNGG 4 cut(s) 417, 855, 939, 1339
BssMI GATC 6 cut(s) 240, 548, 762, 1147, 1398, 1500
BssNI GRCGYC 2 cut(s) 162, 1469
BssT1I CCWWGG 2 cut(s) 417, 1339
Bst2UI CCWGG 2 cut(s) 294, 1053
Bst4CI ACNGT 4 cut(s) 431, 586, 776, 1117
BstACI GRCGYC 2 cut(s) 162, 1469
BstAUI TGTACA 2 cut(s) 232, 630
BstBAI YACGTR 1 cut(s) 514
BstC8I GCNNGC 4 cut(s) 1028, 1032, 1226, 1581
BstDEI CTNAG 7 cut(s) 357, 921, 948, 1142, 1154, 1163, 1378
BstDSI CCRYGG 1 cut(s) 939
BstENI CCTNNNNNAGG 1 cut(s) 1268
BstF5I GGATG 7 cut(s) 471, 486, 698, 828, 1078, 1090, 1485
BstFNI CGCG 1 cut(s) 486
BstHHI GCGC 2 cut(s) 139, 486
BstKTI GATC 6 cut(s) 243, 551, 765, 1150, 1401, 1503
BstMAI GTCTC 3 cut(s) 810, 1081, 1150
BstMBI GATC 6 cut(s) 240, 548, 762, 1147, 1398, 1500
BstMCI CGRYCG 1 cut(s) 1447
BstMWI GCNNNNNNNGC 5 cut(s) 185, 194, 200, 980, 1344
BstNI CCWGG 2 cut(s) 294, 1053
BstNSI RCATGY 5 cut(s) 239, 806, 1030, 1323, 1637
BstSCI CCNGG 3 cut(s) 292, 880, 1051
BstSLI GKGCMC 2 cut(s) 614, 1264
BstSNI TACGTA 1 cut(s) 514
BstUI CGCG 1 cut(s) 486
BstV1I GCAGC 4 cut(s) 181, 301, 995, 1021
BstV2I GAAGAC 2 cut(s) 938, 1227
BstX2I RGATCY 1 cut(s) 1147
BstYI RGATCY 1 cut(s) 1147
BstZI CGGCCG 1 cut(s) 1444
Bsu36I CCTNAGG 1 cut(s) 948
BsuRI GGCC 2 cut(s) 644, 1446
BtgI CCRYGG 1 cut(s) 939
BtgZI GCGATG 1 cut(s) 1269
BtsCI GGATG 7 cut(s) 471, 486, 698, 828, 1078, 1090, 1485
BtsIMutI CAGTG 1 cut(s) 591
BveI ACCTGC 1 cut(s) 1192
Cac8I GCNNGC 4 cut(s) 1028, 1032, 1226, 1581
CfoI GCGC 2 cut(s) 139, 486
Cfr10I RCCGGY 3 cut(s) 122, 1030, 1256
Cfr13I GGNCC 2 cut(s) 250, 1361
CseI GACGC 2 cut(s) 698, 1477
Csp6I GTAC 7 cut(s) 156, 233, 511, 631, 852, 893, 1595
CspAI ACCGGT 1 cut(s) 122
CviAII CATG 8 cut(s) 236, 788, 797, 803, 1027, 1084, 1320, 1634
CviQI GTAC 7 cut(s) 156, 233, 511, 631, 852, 893, 1595
DdeI CTNAG 7 cut(s) 357, 921, 948, 1142, 1154, 1163, 1378
DpnI GATC 6 cut(s) 242, 550, 764, 1149, 1400, 1502
DpnII GATC 6 cut(s) 240, 548, 762, 1147, 1398, 1500
DraIII CACNNNGTG 1 cut(s) 1166
DrdI GACNNNNNNGTC 1 cut(s) 807
DseDI GACNNNNNNGTC 1 cut(s) 807
EaeI YGGCCR 1 cut(s) 1444
EagI CGGCCG 1 cut(s) 1444
EclXI CGGCCG 1 cut(s) 1444
Eco105I TACGTA 1 cut(s) 514
Eco130I CCWWGG 2 cut(s) 417, 1339
Eco31I GGTCTC 2 cut(s) 810, 1150
Eco32I GATATC 1 cut(s) 439
Eco47I GGWCC 2 cut(s) 250, 1361
Eco52I CGGCCG 1 cut(s) 1444
Eco57I CTGAAG 2 cut(s) 882, 1563
Eco81I CCTNAGG 1 cut(s) 948
Eco88I CYCGRG 1 cut(s) 140
EcoNI CCTNNNNNAGG 1 cut(s) 1268
EcoO109I RGGNCCY 1 cut(s) 250
EcoRII CCWGG 2 cut(s) 292, 1051
EcoRV GATATC 1 cut(s) 439
EcoT14I CCWWGG 2 cut(s) 417, 1339
ErhI CCWWGG 2 cut(s) 417, 1339
FaeI CATG 8 cut(s) 239, 791, 800, 806, 1030, 1087, 1323, 1637
FalI AAGNNNNNCTT 4 cut(s) 538, 570, 1547, 1579
FaqI GGGAC 1 cut(s) 263
FatI CATG 8 cut(s) 235, 787, 796, 802, 1026, 1083, 1319, 1633
FauI CCCGC 1 cut(s) 1303
FauNDI CATATG 1 cut(s) 664
Fnu4HI GCNGC 5 cut(s) 195, 290, 984, 1035, 1447
FokI GGATG 7 cut(s) 458, 493, 705, 815, 1077, 1085, 1492
Fsp4HI GCNGC 5 cut(s) 195, 290, 984, 1035, 1447
FspBI CTAG 2 cut(s) 980, 1494
GlaI GCGC 2 cut(s) 138, 485
GluI GCNGC 5 cut(s) 195, 290, 984, 1035, 1447
GsuI CTGGAG 3 cut(s) 201, 315, 1584
HaeIII GGCC 2 cut(s) 644, 1446
HapII CCGG 6 cut(s) 123, 645, 882, 1031, 1101, 1257
HgaI GACGC 2 cut(s) 698, 1477
HhaI GCGC 2 cut(s) 139, 486
Hin1I GRCGYC 2 cut(s) 162, 1469
Hin1II CATG 8 cut(s) 239, 791, 800, 806, 1030, 1087, 1323, 1637
Hin6I GCGC 2 cut(s) 137, 484
HinP1I GCGC 2 cut(s) 137, 484
HinfI GANTC 8 cut(s) 344, 808, 999, 1205, 1440, 1456, 1518, 1614
HpaII CCGG 6 cut(s) 123, 645, 882, 1031, 1101, 1257
HphI GGTGA 2 cut(s) 290, 816
Hpy166II GTNNAC 4 cut(s) 7, 233, 281, 1606
Hpy188I TCNGA 7 cut(s) 360, 436, 758, 1007, 1129, 1155, 1398
Hpy188III TCNNGA 5 cut(s) 326, 1202, 1465, 1504, 1515
Hpy8I GTNNAC 4 cut(s) 7, 233, 281, 1606
Hpy99I CGWCG 4 cut(s) 167, 714, 758, 1471
HpyAV CCTTC 6 cut(s) 88, 215, 483, 831, 906, 1538
HpyCH4III ACNGT 4 cut(s) 431, 586, 776, 1117
HpyCH4IV ACGT 4 cut(s) 111, 162, 466, 513
HpyCH4V TGCA 8 cut(s) 289, 791, 1015, 1058, 1181, 1283, 1511, 1571
HpyF10VI GCNNNNNNNGC 5 cut(s) 185, 194, 200, 980, 1344
HpyF3I CTNAG 7 cut(s) 357, 921, 948, 1142, 1154, 1163, 1378
HpySE526I ACGT 4 cut(s) 111, 162, 466, 513
Hsp92I GRCGYC 2 cut(s) 162, 1469
Hsp92II CATG 8 cut(s) 239, 791, 800, 806, 1030, 1087, 1323, 1637
HspAI GCGC 2 cut(s) 137, 484
KroI GCCGGC 1 cut(s) 1030
KroNI GCCGGC 1 cut(s) 1032
Kzo9I GATC 6 cut(s) 240, 548, 762, 1147, 1398, 1500
LmnI GCTCC 4 cut(s) 673, 719, 949, 1042
Lsp1109I GCAGC 4 cut(s) 181, 301, 995, 1021
LweI GCATC 8 cut(s) 343, 471, 683, 1063, 1168, 1292, 1356, 1520
MaeI CTAG 2 cut(s) 980, 1494
MaeII ACGT 4 cut(s) 111, 162, 466, 513
MaeIII GTNAC 1 cut(s) 586
MalI GATC 6 cut(s) 242, 550, 764, 1149, 1400, 1502
MboI GATC 6 cut(s) 240, 548, 762, 1147, 1398, 1500
MflI RGATCY 1 cut(s) 1147
MhlI GDGCHC 2 cut(s) 614, 1264
MluCI AATT 7 cut(s) 270, 317, 404, 569, 597, 1059, 1530
MlyI GAGTC 3 cut(s) 353, 817, 1449
MmeI TCCRAC 1 cut(s) 736
MroNI GCCGGC 1 cut(s) 1030
MroXI GAANNNNTTC 1 cut(s) 493
MseI TTAA 6 cut(s) 968, 1097, 1386, 1451, 1536, 1642
MslI CAYNNNNRTG 1 cut(s) 801
MspA1I CMGCKG 1 cut(s) 986
MspI CCGG 6 cut(s) 123, 645, 882, 1031, 1101, 1257
MspR9I CCNGG 3 cut(s) 294, 882, 1053
MvaI CCWGG 2 cut(s) 294, 1053
MvnI CGCG 1 cut(s) 486
MwoI GCNNNNNNNGC 5 cut(s) 185, 194, 200, 980, 1344
NaeI GCCGGC 1 cut(s) 1032
NciI CCSGG 1 cut(s) 882
NdeI CATATG 1 cut(s) 664
NdeII GATC 6 cut(s) 240, 548, 762, 1147, 1398, 1500
NgoMIV GCCGGC 1 cut(s) 1030
NlaIII CATG 8 cut(s) 239, 791, 800, 806, 1030, 1087, 1323, 1637
NlaIV GGNNCC 5 cut(s) 251, 613, 945, 954, 1261
NmuCI GTSAC 1 cut(s) 586
NspI RCATGY 5 cut(s) 239, 806, 1030, 1323, 1637
PaeI GCATGC 1 cut(s) 1030
PaqCI CACCTGC 1 cut(s) 1192
PciI ACATGT 2 cut(s) 235, 802
PdiI GCCGGC 1 cut(s) 1032
PdmI GAANNNNTTC 1 cut(s) 493
PfeI GAWTC 5 cut(s) 999, 1205, 1456, 1518, 1614
PflFI GACNNNGTC 2 cut(s) 101, 164
PinAI ACCGGT 1 cut(s) 122
PkrI GCNGC 5 cut(s) 196, 291, 985, 1036, 1448
PleI GAGTC 3 cut(s) 352, 816, 1448
PpsI GAGTC 3 cut(s) 352, 816, 1448
Ppu21I YACGTR 1 cut(s) 514
PpuMI RGGWCCY 1 cut(s) 250
PscI ACATGT 2 cut(s) 235, 802
Psp5II RGGWCCY 1 cut(s) 250
Psp6I CCWGG 2 cut(s) 292, 1051
PspGI CCWGG 2 cut(s) 292, 1051
PspN4I GGNNCC 5 cut(s) 251, 613, 945, 954, 1261
PspPI GGNCC 2 cut(s) 250, 1361
PspPPI RGGWCCY 1 cut(s) 250
PsrI GAACNNNNNNTAC 2 cut(s) 1587, 1619
PsuI RGATCY 1 cut(s) 1147
PsyI GACNNNGTC 2 cut(s) 101, 164
RsaI GTAC 7 cut(s) 157, 234, 512, 632, 853, 894, 1596
RsaNI GTAC 7 cut(s) 156, 233, 511, 631, 852, 893, 1595
RseI CAYNNNNRTG 1 cut(s) 801
SaqAI TTAA 6 cut(s) 968, 1097, 1386, 1451, 1536, 1642
SatI GCNGC 5 cut(s) 195, 290, 984, 1035, 1447
Sau3AI GATC 6 cut(s) 240, 548, 762, 1147, 1398, 1500
Sau96I GGNCC 2 cut(s) 250, 1361
SchI GAGTC 3 cut(s) 353, 817, 1449
ScrFI CCNGG 3 cut(s) 294, 882, 1053
SduI GDGCHC 2 cut(s) 614, 1264
SfaNI GCATC 8 cut(s) 343, 471, 683, 1063, 1168, 1292, 1356, 1520
SinI GGWCC 2 cut(s) 250, 1361
SmiMI CAYNNNNRTG 1 cut(s) 801
SmlI CTYRAG 2 cut(s) 305, 1504
SmoI CTYRAG 2 cut(s) 305, 1504
SnaBI TACGTA 1 cut(s) 514
SphI GCATGC 1 cut(s) 1030
Sse9I AATT 7 cut(s) 270, 317, 404, 569, 597, 1059, 1530
SsiI CCGC 6 cut(s) 486, 671, 986, 1222, 1296, 1447
SspI AATATT 1 cut(s) 733
SspMI CTAG 2 cut(s) 980, 1494
StyD4I CCNGG 3 cut(s) 292, 880, 1051
StyI CCWWGG 2 cut(s) 417, 1339
TaaI ACNGT 4 cut(s) 431, 586, 776, 1117
TaiI ACGT 4 cut(s) 114, 165, 469, 516
TaqI TCGA 2 cut(s) 243, 1203
TasI AATT 7 cut(s) 270, 317, 404, 569, 597, 1059, 1530
TatI WGTACW 2 cut(s) 232, 630
TauI GCSGC 1 cut(s) 1449
TfiI GAWTC 5 cut(s) 999, 1205, 1456, 1518, 1614
Tru1I TTAA 6 cut(s) 968, 1097, 1386, 1451, 1536, 1642
Tru9I TTAA 6 cut(s) 968, 1097, 1386, 1451, 1536, 1642
TscAI CASTG 1 cut(s) 591
TseFI GTSAC 1 cut(s) 586
TseI GCWGC 4 cut(s) 194, 289, 983, 1034
Tsp45I GTSAC 1 cut(s) 586
TspDTI ATGAA 1 cut(s) 460
TspGWI ACGGA 3 cut(s) 173, 732, 1492
TspRI CASTG 1 cut(s) 591
Tth111I GACNNNGTC 2 cut(s) 101, 164
VpaK11BI GGWCC 2 cut(s) 250, 1361
XagI CCTNNNNNAGG 1 cut(s) 1268
XceI RCATGY 5 cut(s) 239, 806, 1030, 1323, 1637
XmnI GAANNNNTTC 1 cut(s) 493
XspI CTAG 2 cut(s) 980, 1494
ZraI GACGTC 1 cut(s) 163
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.