Rmu_co8230369.1_g000001

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_co8230369.1
OG0000108
Physical Location & Seq
Forward (+)
1 .. 743
743 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_co8230369.1_g000001.1.cds

Sequence Viewer

Length: 508 bp
aggaggaatgaccgtggctctttcagacattgttcttctccgcgatcttcttagacccctgcatgatctcaatgatgcaccggccttgtgcaattaccttgaatcattctacacacttcggaagcctgtgtcatctaccataaatacattggcaggtgctttgtacaaggttttttgtgcatcacctgatccagcaagacaggaaatgcgtgaagcatgtttcggctatttgagccttggaggcatctgttcatatggacccgtatctcttctctctggtcttaacccccgtccactgcacttgtttctccatttctttgctgttgctatttatggcgtagggcgcttgatgtttccattcccttcacctaaacgcatgtggcttggggctagattgatcttgagtgcatcaggcatcatattcccgattataaagggagaaggagttagacagatgttctttcctgcaacagtgccagcatattacagatctgcacctgtttactga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

168

Amino Acids

18.49

Weight (kDa)

9.33

Isoelectric Point (pI)

46.44

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 1 cut(s) 432
AarI CACCTGC 1 cut(s) 144
Acc36I ACCTGC 1 cut(s) 144
AccII CGCG 1 cut(s) 43
AciI CCGC 1 cut(s) 41
AclWI GGATC 1 cut(s) 183
AfaI GTAC 1 cut(s) 165
AgsI TTSAA 1 cut(s) 102
AlwI GGATC 1 cut(s) 183
AoxI GGCC 1 cut(s) 82
AspLEI GCGC 1 cut(s) 346
AspS9I GGNCC 1 cut(s) 258
AsuHPI GGTGA 2 cut(s) 175, 358
AvaII GGWCC 1 cut(s) 258
BfaI CTAG 1 cut(s) 391
BfoI RGCGCY 1 cut(s) 347
BfuAI ACCTGC 1 cut(s) 144
BglI GCCNNNNNGGC 1 cut(s) 241
BglII AGATCT 1 cut(s) 489
Bme18I GGWCC 1 cut(s) 258
BmgT120I GGNCC 1 cut(s) 258
BmiI GGNNCC 1 cut(s) 260
BmsI GCATC 5 cut(s) 65, 189, 253, 417, 424
BpuEI CTTGAG 1 cut(s) 422
BsaJI CCNNGG 2 cut(s) 13, 236
BsaXI ACNNNNNCTCC 2 cut(s) 430, 460
Bse118I RCCGGY 1 cut(s) 80
BseDI CCNNGG 2 cut(s) 13, 236
BsgI GTGCAG 2 cut(s) 282, 478
Bsh1236I CGCG 1 cut(s) 43
BshFI GGCC 1 cut(s) 84
BsiSI CCGG 1 cut(s) 81
BsnI GGCC 1 cut(s) 84
Bsp1407I TGTACA 1 cut(s) 163
Bsp143I GATC 5 cut(s) 44, 65, 188, 397, 489
BspACI CCGC 1 cut(s) 41
BspANI GGCC 1 cut(s) 84
BspFNI CGCG 1 cut(s) 43
BspLI GGNNCC 1 cut(s) 260
BspMI ACCTGC 1 cut(s) 144
BspPI GGATC 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 163
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 2 cut(s) 13, 236
BssMI GATC 5 cut(s) 44, 65, 188, 397, 489
BssT1I CCWWGG 1 cut(s) 236
Bst4CI ACNGT 2 cut(s) 14, 473
Bst6I CTCTTC 1 cut(s) 274
BstAUI TGTACA 1 cut(s) 163
BstC8I GCNNGC 1 cut(s) 478
BstDEI CTNAG 1 cut(s) 51
BstDSI CCRYGG 1 cut(s) 13
BstFNI CGCG 1 cut(s) 43
BstH2I RGCGCY 1 cut(s) 347
BstHHI GCGC 1 cut(s) 346
BstKTI GATC 5 cut(s) 47, 68, 191, 400, 492
BstMBI GATC 5 cut(s) 44, 65, 188, 397, 489
BstMWI GCNNNNNNNGC 3 cut(s) 232, 241, 343
BstNSI RCATGY 2 cut(s) 220, 380
BstUI CGCG 1 cut(s) 43
BstX2I RGATCY 1 cut(s) 489
BstYI RGATCY 1 cut(s) 489
BsuRI GGCC 1 cut(s) 84
BtgI CCRYGG 1 cut(s) 13
BtsI GCAGTG 1 cut(s) 294
BtsIMutI CAGTG 2 cut(s) 294, 478
BveI ACCTGC 1 cut(s) 144
Cac8I GCNNGC 1 cut(s) 478
CfoI GCGC 1 cut(s) 346
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 1 cut(s) 258
Csp6I GTAC 1 cut(s) 164
CspCI CAANNNNNGTGG 2 cut(s) 283, 318
CviAII CATG 3 cut(s) 63, 217, 377
CviJI RGCY 7 cut(s) 18, 84, 125, 226, 235, 383, 390
CviKI_1 RGCY 7 cut(s) 18, 84, 125, 226, 235, 383, 390
CviQI GTAC 1 cut(s) 164
DdeI CTNAG 1 cut(s) 51
DpnI GATC 5 cut(s) 46, 67, 190, 399, 491
DpnII GATC 5 cut(s) 44, 65, 188, 397, 489
Eam1104I CTCTTC 1 cut(s) 274
EarI CTCTTC 1 cut(s) 274
Eco130I CCWWGG 1 cut(s) 236
Eco47I GGWCC 1 cut(s) 258
EcoT14I CCWWGG 1 cut(s) 236
ErhI CCWWGG 1 cut(s) 236
FaeI CATG 3 cut(s) 66, 220, 380
FatI CATG 3 cut(s) 62, 216, 376
FauNDI CATATG 1 cut(s) 254
FspBI CTAG 1 cut(s) 391
GlaI GCGC 1 cut(s) 345
HaeII RGCGCY 1 cut(s) 347
HaeIII GGCC 1 cut(s) 84
HapII CCGG 1 cut(s) 81
HhaI GCGC 1 cut(s) 346
Hin1II CATG 3 cut(s) 66, 220, 380
Hin6I GCGC 1 cut(s) 344
HinP1I GCGC 1 cut(s) 344
HinfI GANTC 1 cut(s) 102
HpaII CCGG 1 cut(s) 81
HphI GGTGA 2 cut(s) 175, 358
Hpy166II GTNNAC 2 cut(s) 294, 503
Hpy188I TCNGA 2 cut(s) 26, 121
Hpy188III TCNNGA 2 cut(s) 401, 425
Hpy8I GTNNAC 2 cut(s) 294, 503
HpyAV CCTTC 2 cut(s) 373, 435
HpyCH4III ACNGT 2 cut(s) 14, 473
HpyCH4V TGCA 8 cut(s) 62, 78, 91, 180, 299, 408, 468, 495
HpyF10VI GCNNNNNNNGC 3 cut(s) 232, 241, 343
HpyF3I CTNAG 1 cut(s) 51
Hsp92II CATG 3 cut(s) 66, 220, 380
HspAI GCGC 1 cut(s) 344
Kzo9I GATC 5 cut(s) 44, 65, 188, 397, 489
LweI GCATC 5 cut(s) 65, 189, 253, 417, 424
MaeI CTAG 1 cut(s) 391
MalI GATC 5 cut(s) 46, 67, 190, 399, 491
MboI GATC 5 cut(s) 44, 65, 188, 397, 489
MboII GAAGA 3 cut(s) 27, 39, 261
MflI RGATCY 1 cut(s) 489
MluCI AATT 1 cut(s) 92
MnlI CCTC 1 cut(s) 234
MseI TTAA 1 cut(s) 283
MspI CCGG 1 cut(s) 81
MvnI CGCG 1 cut(s) 43
MwoI GCNNNNNNNGC 3 cut(s) 232, 241, 343
NdeI CATATG 1 cut(s) 254
NdeII GATC 5 cut(s) 44, 65, 188, 397, 489
NlaIII CATG 3 cut(s) 66, 220, 380
NlaIV GGNNCC 1 cut(s) 260
NspI RCATGY 2 cut(s) 220, 380
PaqCI CACCTGC 1 cut(s) 144
PfeI GAWTC 1 cut(s) 102
PsiI TTATAA 1 cut(s) 432
PspN4I GGNNCC 1 cut(s) 260
PspPI GGNCC 1 cut(s) 258
PsuI RGATCY 1 cut(s) 489
RsaI GTAC 1 cut(s) 165
RsaNI GTAC 1 cut(s) 164
SaqAI TTAA 1 cut(s) 283
Sau3AI GATC 5 cut(s) 44, 65, 188, 397, 489
Sau96I GGNCC 1 cut(s) 258
SetI ASST 6 cut(s) 100, 158, 172, 188, 371, 500
SfaNI GCATC 5 cut(s) 65, 189, 253, 417, 424
SinI GGWCC 1 cut(s) 258
SmlI CTYRAG 1 cut(s) 401
SmoI CTYRAG 1 cut(s) 401
Sse9I AATT 1 cut(s) 92
SsiI CCGC 1 cut(s) 41
SspMI CTAG 1 cut(s) 391
StyI CCWWGG 1 cut(s) 236
TaaI ACNGT 2 cut(s) 14, 473
TasI AATT 1 cut(s) 92
TatI WGTACW 1 cut(s) 163
TfiI GAWTC 1 cut(s) 102
Tru1I TTAA 1 cut(s) 283
Tru9I TTAA 1 cut(s) 283
TscAI CASTG 2 cut(s) 301, 478
TspDTI ATGAA 1 cut(s) 241
TspRI CASTG 2 cut(s) 301, 478
VpaK11BI GGWCC 1 cut(s) 258
XceI RCATGY 2 cut(s) 220, 380
XcmI CCANNNNNNNNNTGG 1 cut(s) 146
XspI CTAG 1 cut(s) 391
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.