Rh6CG031800

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6C
OG0000108
Physical Location & Seq
Reverse (-)
2936529 .. 2940254
3726 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6CG031800.1

Sequence Viewer

Length: 1347 bp
ATGGTTTCTTACGAGTATGTTTTGGCTGGGGTGTTGGTTTCTTTGCTGGGCTCTATTTTCTTCATGATCATCAGCTCTACTTTGGGAGGAAAGAAACAATTCAAGGCTGCAGGTGCAGTAAAGAGTAATGGGATCGGAAACGGTGAGTTTCTGCCGGAAATGGAGGTGGAGAAAAGTACCGATGTCGTCATTGTCGGTGCCGGAGTTGCTGGTGCAGCTCTTGCTTACACTCTTGCCAAGGAAGGACGGCGTGTACATGTAATTGAAAGAGACTTGAGTGAGCCAGACAGAATTGTTGGGGAGCTGTTGCAGCCTGGGGGATATCTCAAATTGATTGAGTTGGGTCTTGAAGATTGTGCAAATGAATCGATTGATGCCCAGAAAGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACGACACTGTCTTATCCCTTGGAGAAATACAGTTCAGATGTGGCCGGGAGGAGTTTCCACAATGGGCGTTTCATTCAAAGAATGCGTGAAAAAGCTACCACTCTTTCAAATGTGAAAATGGAACAAGGATCAGTGACAACACTAATAGAGGAAAAGGGTATTGTCAAAGGGGTGATTTACAAGAACAAGGCTGGAGAGGAGATGAGAACATATGCTCCACTAACAATCGTGTGCGACGGCTGCTTTTCAAATTTGCGCAAATCTCTTAGTGCTCCAAAGGTTGAAAGTCCCTCTTGTTTTGTTGGTTTGATCTTGGAGGACTGTGAGCTTCCACACGCAAATCATGGGCATGTCATTCTGGGAGACCCTTCACCCATCCTGTTCTATCCCATCAGTTCCACCGAGGTTCGCTGTTTGGTAGATGTGCCTGGAACAAAAGTACCTTCAGTAGCTAGTGGTGAAATGACCAACTATTTGAAAACTGTGGTAGCACCTCAGGTTCCCCCACAACTGTACAATGCTTTTATGGCCGCTGTCAACAAGGGAAACATCAGATCCATGCAAAACAGAAGCATGGCTGCTAATCCTGTTCCCACTCCTGGTGCAATTTTGTTGGGGGATTCATTCAACATGAGGCATCCTTTAACAGGAGGAGGAATGACCGTGGCTCTTTCAGACATTGTTCTTCTCCGGGATCTTCTTAGACCCCTACGTAATCTCAATGATGCACCTGCTTTGTGCAATTACCTTGAATCATTTTACACACTGCGTAAGCCTGTGTCATCTACCATAAACACATTGGCAGGTGCATTGTACAAGGTGTTTTGTGCATCACCTGATCCAGCAAGACAGGAAATGCGTGAAGCCTGTTTTGGCTATTTGAGCCTTGGAGGCATCTGCTCATATGGACCAGAACTATACTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

448

Amino Acids

48.4

Weight (kDa)

6.62

Isoelectric Point (pI)

42.03

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 60 - 371 4.6e-18 FAD binding domain
DAO PF01266 61 - 91 4e-08 FAD dependent oxidoreductase
FAD_binding_2 PF00890 61 - 90 8.5e-06 FAD binding domain
NAD_binding_8 PF13450 64 - 90 1.7e-06 NAD(P)-binding Rossmann-like domain
SE PF08491 212 - 444 3.1e-100 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 3 cut(s) 101, 1159, 1214
Acc16I TGCGCA 1 cut(s) 677
Acc36I ACCTGC 3 cut(s) 101, 1159, 1214
AccB1I GGYRCC 1 cut(s) 197
AciI CCGC 1 cut(s) 951
AclWI GGATC 5 cut(s) 140, 556, 969, 1122, 1253
AcoI YGGCCR 2 cut(s) 462, 948
AcsI RAATTY 1 cut(s) 670
AcuI CTGAAG 1 cut(s) 849
AfaI GTAC 5 cut(s) 178, 255, 861, 935, 1235
AfiI CCNNNNNNNGG 2 cut(s) 1019, 1067
AflIII ACRYGT 1 cut(s) 256
AjnI CCWGG 3 cut(s) 313, 847, 1018
AjuI GAANNNNNNNTTGG 2 cut(s) 1275, 1307
AloI GAACNNNNNNTCC 2 cut(s) 619, 651
AluBI AGCT 6 cut(s) 75, 218, 304, 515, 748, 872
AluI AGCT 6 cut(s) 75, 218, 304, 515, 748, 872
Alw21I GWGCWC 1 cut(s) 694
Alw26I GTCTC 2 cut(s) 264, 777
AlwI GGATC 5 cut(s) 140, 556, 969, 1122, 1253
AoxI GGCC 2 cut(s) 462, 948
ApeKI GCWGC 5 cut(s) 107, 215, 310, 660, 998
ApoI RAATTY 1 cut(s) 670
ArsI GACNNNNNNTTYG 2 cut(s) 877, 909
Asp700I GAANNNNTTC 1 cut(s) 98
AspLEI GCGC 1 cut(s) 678
AspS9I GGNCC 1 cut(s) 1328
AsuC2I CCSGG 2 cut(s) 466, 1112
AsuHPI GGTGA 5 cut(s) 155, 604, 783, 890, 1245
AvaII GGWCC 1 cut(s) 1328
AxyI CCTNAGG 1 cut(s) 915
BaeI ACNNNNGTAYC 2 cut(s) 843, 876
BanI GGYRCC 1 cut(s) 197
BanII GRGCYC 1 cut(s) 53
Bbv12I GWGCWC 1 cut(s) 694
BbvI GCAGC 5 cut(s) 94, 227, 322, 647, 985
BccI CCATC 3 cut(s) 404, 803, 818
BceAI ACGGC 2 cut(s) 263, 673
BcgI CGANNNNNNTGC 2 cut(s) 348, 382
BciT130I CCWGG 3 cut(s) 315, 849, 1020
BciVI GTATCC 1 cut(s) 412
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 2 cut(s) 466, 1112
BcoDI GTCTC 2 cut(s) 264, 777
BfaI CTAG 1 cut(s) 873
BfmI CTRYAG 1 cut(s) 108
BfuAI ACCTGC 3 cut(s) 101, 1159, 1214
BfuI GTATCC 1 cut(s) 412
BglI GCCNNNNNGGC 1 cut(s) 1311
BisI GCNGC 6 cut(s) 108, 216, 311, 661, 951, 999
BlsI GCNGC 6 cut(s) 109, 217, 312, 662, 952, 1000
Bme1390I CCNGG 5 cut(s) 315, 466, 849, 1020, 1112
Bme18I GGWCC 1 cut(s) 1328
BmgT120I GGNCC 1 cut(s) 1328
BmiI GGNNCC 2 cut(s) 199, 921
BmrFI CCNGG 5 cut(s) 315, 466, 849, 1020, 1112
BmsI GCATC 5 cut(s) 364, 1066, 1135, 1259, 1323
BpmI CTGGAG 1 cut(s) 633
BpuEI CTTGAG 1 cut(s) 295
BpuMI CCSGG 2 cut(s) 466, 1112
Bsa29I ATCGAT 1 cut(s) 368
BsaAI YACGTR 1 cut(s) 1133
BsaI GGTCTC 1 cut(s) 777
BsaJI CCNNGG 6 cut(s) 237, 314, 438, 822, 1083, 1306
BsaXI ACNNNNNCTCC 2 cut(s) 619, 649
Bsc4I CCNNNNNNNGG 2 cut(s) 1019, 1067
Bse21I CCTNAGG 1 cut(s) 915
BseBI CCWGG 3 cut(s) 315, 849, 1020
BseCI ATCGAT 1 cut(s) 368
BseDI CCNNGG 6 cut(s) 237, 314, 438, 822, 1083, 1306
BseGI GGATG 2 cut(s) 795, 1057
BseLI CCNNNNNNNGG 2 cut(s) 1019, 1067
BseMII CTCAG 1 cut(s) 929
BseRI GAGGAG 3 cut(s) 484, 632, 1086
BseXI GCAGC 5 cut(s) 94, 227, 322, 647, 985
BseYI CCCAGC 2 cut(s) 26, 46
BsgI GTGCAG 2 cut(s) 135, 234
BshFI GGCC 2 cut(s) 464, 950
BshNI GGYRCC 1 cut(s) 197
BshVI ATCGAT 1 cut(s) 368
BsiHKAI GWGCWC 1 cut(s) 694
BsiSI CCGG 4 cut(s) 155, 201, 465, 1111
BslFI GGGAC 1 cut(s) 693
BslI CCNNNNNNNGG 2 cut(s) 1019, 1067
BsmAI GTCTC 2 cut(s) 264, 777
BsmFI GGGAC 1 cut(s) 693
BsmI GAATGC 1 cut(s) 507
BsnI GGCC 2 cut(s) 464, 950
Bso31I GGTCTC 1 cut(s) 777
Bsp1286I GDGCHC 2 cut(s) 53, 694
Bsp1407I TGTACA 3 cut(s) 253, 933, 1233
Bsp143I GATC 7 cut(s) 66, 132, 548, 729, 974, 1114, 1258
BspACI CCGC 1 cut(s) 951
BspANI GGCC 2 cut(s) 464, 950
BspCNI CTCAG 1 cut(s) 928
BspDI ATCGAT 1 cut(s) 368
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 199, 921
BspMAI CTGCAG 1 cut(s) 112
BspMI ACCTGC 3 cut(s) 101, 1159, 1214
BspPI GGATC 5 cut(s) 140, 556, 969, 1122, 1253
BspT107I GGYRCC 1 cut(s) 197
BspTNI GGTCTC 1 cut(s) 777
BsrGI TGTACA 3 cut(s) 253, 933, 1233
BssECI CCNNGG 6 cut(s) 237, 314, 438, 822, 1083, 1306
BssMI GATC 7 cut(s) 66, 132, 548, 729, 974, 1114, 1258
BssT1I CCWWGG 3 cut(s) 237, 438, 1306
Bst2UI CCWGG 3 cut(s) 315, 849, 1020
Bst4CI ACNGT 7 cut(s) 143, 429, 452, 743, 904, 933, 1084
BstAPI GCANNNNNTGC 1 cut(s) 221
BstAUI TGTACA 3 cut(s) 253, 933, 1233
BstBAI YACGTR 1 cut(s) 1133
BstDEI CTNAG 3 cut(s) 686, 915, 1121
BstDSI CCRYGG 1 cut(s) 1083
BstENI CCTNNNNNAGG 1 cut(s) 1065
BstF5I GGATG 2 cut(s) 795, 1057
BstHHI GCGC 1 cut(s) 678
BstKTI GATC 7 cut(s) 69, 135, 551, 732, 977, 1117, 1261
BstMAI GTCTC 2 cut(s) 264, 777
BstMBI GATC 7 cut(s) 66, 132, 548, 729, 974, 1114, 1258
BstMWI GCNNNNNNNGC 9 cut(s) 113, 206, 215, 221, 310, 660, 947, 1302, 1311
BstNI CCWGG 3 cut(s) 315, 849, 1020
BstNSI RCATGY 2 cut(s) 260, 773
BstSCI CCNGG 5 cut(s) 313, 464, 847, 1018, 1110
BstSFI CTRYAG 1 cut(s) 108
BstSNI TACGTA 1 cut(s) 1133
BstV1I GCAGC 5 cut(s) 94, 227, 322, 647, 985
BstX2I RGATCY 2 cut(s) 974, 1114
BstYI RGATCY 2 cut(s) 974, 1114
Bsu15I ATCGAT 1 cut(s) 368
Bsu36I CCTNAGG 1 cut(s) 915
BsuI GTATCC 1 cut(s) 412
BsuRI GGCC 2 cut(s) 464, 950
BsuTUI ATCGAT 1 cut(s) 368
BtgI CCRYGG 1 cut(s) 1083
BtsCI GGATG 2 cut(s) 795, 1057
BtsI GCAGTG 1 cut(s) 1184
BtsIMutI CAGTG 3 cut(s) 425, 558, 1184
BveI ACCTGC 3 cut(s) 101, 1159, 1214
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 678
Cfr13I GGNCC 1 cut(s) 1328
ClaI ATCGAT 1 cut(s) 368
Csp6I GTAC 5 cut(s) 177, 254, 860, 934, 1234
CviAII CATG 7 cut(s) 64, 257, 764, 770, 979, 994, 1051
CviQI GTAC 5 cut(s) 177, 254, 860, 934, 1234
DdeI CTNAG 3 cut(s) 686, 915, 1121
DpnI GATC 7 cut(s) 68, 134, 550, 731, 976, 1116, 1260
DpnII GATC 7 cut(s) 66, 132, 548, 729, 974, 1114, 1258
EaeI YGGCCR 2 cut(s) 462, 948
Eco105I TACGTA 1 cut(s) 1133
Eco130I CCWWGG 3 cut(s) 237, 438, 1306
Eco24I GRGCYC 1 cut(s) 53
Eco31I GGTCTC 1 cut(s) 777
Eco32I GATATC 1 cut(s) 323
Eco47I GGWCC 1 cut(s) 1328
Eco57I CTGAAG 1 cut(s) 849
Eco81I CCTNAGG 1 cut(s) 915
EcoNI CCTNNNNNAGG 1 cut(s) 1065
EcoRII CCWGG 3 cut(s) 313, 847, 1018
EcoRV GATATC 1 cut(s) 323
EcoT14I CCWWGG 3 cut(s) 237, 438, 1306
EcoT38I GRGCYC 1 cut(s) 53
ErhI CCWWGG 3 cut(s) 237, 438, 1306
FaeI CATG 7 cut(s) 67, 260, 767, 773, 982, 997, 1054
FalI AAGNNNNNCTT 2 cut(s) 697, 729
FaqI GGGAC 1 cut(s) 693
FatI CATG 7 cut(s) 63, 256, 763, 769, 978, 993, 1050
FauNDI CATATG 2 cut(s) 631, 1324
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 6 cut(s) 108, 216, 311, 661, 951, 999
FokI GGATG 2 cut(s) 782, 1044
FriOI GRGCYC 1 cut(s) 53
Fsp4HI GCNGC 6 cut(s) 108, 216, 311, 661, 951, 999
FspBI CTAG 1 cut(s) 873
FspI TGCGCA 1 cut(s) 677
GlaI GCGC 1 cut(s) 677
GluI GCNGC 6 cut(s) 108, 216, 311, 661, 951, 999
GsaI CCCAGC 2 cut(s) 30, 50
GsuI CTGGAG 1 cut(s) 633
HaeIII GGCC 2 cut(s) 464, 950
HapII CCGG 4 cut(s) 155, 201, 465, 1111
HhaI GCGC 1 cut(s) 678
Hin1II CATG 7 cut(s) 67, 260, 767, 773, 982, 997, 1054
Hin6I GCGC 1 cut(s) 676
HinP1I GCGC 1 cut(s) 676
HincII GTYRAC 1 cut(s) 958
HindII GTYRAC 1 cut(s) 958
HinfI GANTC 3 cut(s) 365, 1040, 1172
HpaII CCGG 4 cut(s) 155, 201, 465, 1111
HphI GGTGA 5 cut(s) 155, 604, 783, 890, 1245
Hpy166II GTNNAC 2 cut(s) 254, 958
Hpy188I TCNGA 4 cut(s) 137, 457, 974, 1096
Hpy188III TCNNGA 2 cut(s) 64, 347
Hpy8I GTNNAC 2 cut(s) 254, 958
Hpy99I CGWCG 1 cut(s) 659
HpyAV CCTTC 4 cut(s) 236, 409, 798, 873
HpyCH4III ACNGT 7 cut(s) 143, 429, 452, 743, 904, 933, 1084
HpyCH4IV ACGT 1 cut(s) 1132
HpyF10VI GCNNNNNNNGC 9 cut(s) 113, 206, 215, 221, 310, 660, 947, 1302, 1311
HpyF3I CTNAG 3 cut(s) 686, 915, 1121
HpySE526I ACGT 1 cut(s) 1132
Hsp92II CATG 7 cut(s) 67, 260, 767, 773, 982, 997, 1054
HspAI GCGC 1 cut(s) 676
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 7 cut(s) 66, 132, 548, 729, 974, 1114, 1258
LmnI GCTCC 3 cut(s) 301, 640, 697
Lsp1109I GCAGC 5 cut(s) 94, 227, 322, 647, 985
LweI GCATC 5 cut(s) 364, 1066, 1135, 1259, 1323
MaeI CTAG 1 cut(s) 873
MaeII ACGT 1 cut(s) 1132
MaeIII GTNAC 1 cut(s) 553
MalI GATC 7 cut(s) 68, 134, 550, 731, 976, 1116, 1260
MboI GATC 7 cut(s) 66, 132, 548, 729, 974, 1114, 1258
MboII GAAGA 4 cut(s) 52, 362, 1097, 1109
MflI RGATCY 2 cut(s) 974, 1114
MhlI GDGCHC 2 cut(s) 53, 694
MluCI AATT 7 cut(s) 98, 261, 291, 329, 670, 1026, 1162
MroXI GAANNNNTTC 1 cut(s) 98
MseI TTAA 2 cut(s) 1064, 1345
MslI CAYNNNNRTG 1 cut(s) 768
MspA1I CMGCKG 1 cut(s) 953
MspI CCGG 4 cut(s) 155, 201, 465, 1111
MspR9I CCNGG 5 cut(s) 315, 466, 849, 1020, 1112
Mva1269I GAATGC 1 cut(s) 507
MvaI CCWGG 3 cut(s) 315, 849, 1020
MwoI GCNNNNNNNGC 9 cut(s) 113, 206, 215, 221, 310, 660, 947, 1302, 1311
NciI CCSGG 2 cut(s) 466, 1112
NdeI CATATG 2 cut(s) 631, 1324
NdeII GATC 7 cut(s) 66, 132, 548, 729, 974, 1114, 1258
NlaIII CATG 7 cut(s) 67, 260, 767, 773, 982, 997, 1054
NlaIV GGNNCC 2 cut(s) 199, 921
NmuCI GTSAC 1 cut(s) 553
NsbI TGCGCA 1 cut(s) 677
NspI RCATGY 2 cut(s) 260, 773
PagI TCATGA 1 cut(s) 63
PaqCI CACCTGC 3 cut(s) 101, 1159, 1214
PciI ACATGT 1 cut(s) 256
PctI GAATGC 1 cut(s) 507
PdmI GAANNNNTTC 1 cut(s) 98
PfeI GAWTC 3 cut(s) 365, 1040, 1172
PflFI GACNNNGTC 1 cut(s) 427
PfoI TCCNGGA 1 cut(s) 1110
PkrI GCNGC 6 cut(s) 109, 217, 312, 662, 952, 1000
Ppu21I YACGTR 1 cut(s) 1133
PscI ACATGT 1 cut(s) 256
Psp6I CCWGG 3 cut(s) 313, 847, 1018
PspFI CCCAGC 2 cut(s) 26, 46
PspGI CCWGG 3 cut(s) 313, 847, 1018
PspN4I GGNNCC 2 cut(s) 199, 921
PspPI GGNCC 1 cut(s) 1328
PstI CTGCAG 1 cut(s) 112
PsuI RGATCY 2 cut(s) 974, 1114
PsyI GACNNNGTC 1 cut(s) 427
RsaI GTAC 5 cut(s) 178, 255, 861, 935, 1235
RsaNI GTAC 5 cut(s) 177, 254, 860, 934, 1234
RseI CAYNNNNRTG 1 cut(s) 768
SaqAI TTAA 2 cut(s) 1064, 1345
SatI GCNGC 6 cut(s) 108, 216, 311, 661, 951, 999
Sau3AI GATC 7 cut(s) 66, 132, 548, 729, 974, 1114, 1258
Sau96I GGNCC 1 cut(s) 1328
ScrFI CCNGG 5 cut(s) 315, 466, 849, 1020, 1112
SduI GDGCHC 2 cut(s) 53, 694
SfaNI GCATC 5 cut(s) 364, 1066, 1135, 1259, 1323
SfcI CTRYAG 1 cut(s) 108
SinI GGWCC 1 cut(s) 1328
SmiMI CAYNNNNRTG 1 cut(s) 768
SmlI CTYRAG 1 cut(s) 274
SmoI CTYRAG 1 cut(s) 274
SnaBI TACGTA 1 cut(s) 1133
Sse9I AATT 7 cut(s) 98, 261, 291, 329, 670, 1026, 1162
SsiI CCGC 1 cut(s) 951
SspMI CTAG 1 cut(s) 873
StyD4I CCNGG 5 cut(s) 313, 464, 847, 1018, 1110
StyI CCWWGG 3 cut(s) 237, 438, 1306
TaaI ACNGT 7 cut(s) 143, 429, 452, 743, 904, 933, 1084
TaiI ACGT 1 cut(s) 1135
TaqI TCGA 1 cut(s) 368
TasI AATT 7 cut(s) 98, 261, 291, 329, 670, 1026, 1162
TatI WGTACW 3 cut(s) 253, 933, 1233
TauI GCSGC 1 cut(s) 953
TfiI GAWTC 3 cut(s) 365, 1040, 1172
Tru1I TTAA 2 cut(s) 1064, 1345
Tru9I TTAA 2 cut(s) 1064, 1345
TscAI CASTG 3 cut(s) 432, 558, 1191
TseFI GTSAC 1 cut(s) 553
TseI GCWGC 5 cut(s) 107, 215, 310, 660, 998
Tsp45I GTSAC 1 cut(s) 553
TspDTI ATGAA 4 cut(s) 52, 378, 481, 1032
TspRI CASTG 3 cut(s) 432, 558, 1191
Tth111I GACNNNGTC 1 cut(s) 427
VpaK11BI GGWCC 1 cut(s) 1328
XagI CCTNNNNNAGG 1 cut(s) 1065
XapI RAATTY 1 cut(s) 670
XceI RCATGY 2 cut(s) 260, 773
XcmI CCANNNNNNNNNTGG 2 cut(s) 386, 1216
XmnI GAANNNNTTC 1 cut(s) 98
XspI CTAG 1 cut(s) 873
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.