squalene
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| SE | PF08491 | 188 - 305 | 4.4e-39 | Squalene epoxidase |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 101 |
| Acc36I | ACCTGC | 1 cut(s) | 101 |
| AccB1I | GGYRCC | 1 cut(s) | 197 |
| AciI | CCGC | 1 cut(s) | 864 |
| AclWI | GGATC | 3 cut(s) | 140, 484, 882 |
| AcoI | YGGCCR | 2 cut(s) | 798, 861 |
| AcuI | CTGAAG | 1 cut(s) | 762 |
| AfaI | GTAC | 2 cut(s) | 774, 848 |
| AfiI | CCNNNNNNNGG | 1 cut(s) | 243 |
| AgsI | TTSAA | 4 cut(s) | 103, 425, 617, 811 |
| AjnI | CCWGG | 2 cut(s) | 241, 760 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 547, 579 |
| AluBI | AGCT | 5 cut(s) | 218, 443, 588, 661, 785 |
| AluI | AGCT | 5 cut(s) | 218, 443, 588, 661, 785 |
| Alw21I | GWGCWC | 2 cut(s) | 118, 607 |
| Alw26I | GTCTC | 1 cut(s) | 690 |
| Alw44I | GTGCAC | 1 cut(s) | 114 |
| AlwI | GGATC | 3 cut(s) | 140, 484, 882 |
| AoxI | GGCC | 2 cut(s) | 798, 861 |
| ApaLI | GTGCAC | 1 cut(s) | 114 |
| ApeKI | GCWGC | 5 cut(s) | 107, 215, 588, 821, 911 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 98 |
| AspLEI | GCGC | 1 cut(s) | 826 |
| AsuHPI | GGTGA | 4 cut(s) | 155, 532, 696, 803 |
| AxyI | CCTNAGG | 1 cut(s) | 828 |
| BaeGI | GKGCMC | 1 cut(s) | 118 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 756, 789 |
| BalI | TGGCCA | 1 cut(s) | 800 |
| BanI | GGYRCC | 1 cut(s) | 197 |
| BanII | GRGCYC | 1 cut(s) | 53 |
| Bbv12I | GWGCWC | 2 cut(s) | 118, 607 |
| BbvI | GCAGC | 5 cut(s) | 94, 227, 575, 833, 898 |
| BccI | CCATC | 3 cut(s) | 332, 716, 731 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 276, 310 |
| BciT130I | CCWGG | 2 cut(s) | 243, 762 |
| BciVI | GTATCC | 1 cut(s) | 340 |
| BclI | TGATCA | 1 cut(s) | 66 |
| BcoDI | GTCTC | 1 cut(s) | 690 |
| BfmI | CTRYAG | 1 cut(s) | 108 |
| BfoI | RGCGCY | 1 cut(s) | 827 |
| BfuAI | ACCTGC | 1 cut(s) | 101 |
| BfuI | GTATCC | 1 cut(s) | 340 |
| BisI | GCNGC | 6 cut(s) | 108, 216, 589, 822, 864, 912 |
| BlsI | GCNGC | 6 cut(s) | 109, 217, 590, 823, 865, 913 |
| Bme1390I | CCNGG | 2 cut(s) | 243, 762 |
| BmiI | GGNNCC | 2 cut(s) | 199, 834 |
| BmrFI | CCNGG | 2 cut(s) | 243, 762 |
| BmsI | GCATC | 1 cut(s) | 292 |
| BpmI | CTGGAG | 1 cut(s) | 561 |
| Bsa29I | ATCGAT | 1 cut(s) | 180 |
| BsaI | GGTCTC | 1 cut(s) | 690 |
| BsaJI | CCNNGG | 3 cut(s) | 242, 366, 735 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 547, 577 |
| Bsc4I | CCNNNNNNNGG | 1 cut(s) | 243 |
| Bse21I | CCTNAGG | 1 cut(s) | 828 |
| BseBI | CCWGG | 2 cut(s) | 243, 762 |
| BseCI | ATCGAT | 1 cut(s) | 180 |
| BseDI | CCNNGG | 3 cut(s) | 242, 366, 735 |
| BseGI | GGATG | 1 cut(s) | 708 |
| BseLI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BseMII | CTCAG | 1 cut(s) | 842 |
| BseRI | GAGGAG | 4 cut(s) | 179, 182, 412, 560 |
| BseSI | GKGCMC | 1 cut(s) | 118 |
| BseXI | GCAGC | 5 cut(s) | 94, 227, 575, 833, 898 |
| BseYI | CCCAGC | 3 cut(s) | 26, 46, 392 |
| BsgI | GTGCAG | 1 cut(s) | 234 |
| BshFI | GGCC | 2 cut(s) | 800, 863 |
| BshNI | GGYRCC | 1 cut(s) | 197 |
| BshVI | ATCGAT | 1 cut(s) | 180 |
| BsiHKAI | GWGCWC | 2 cut(s) | 118, 607 |
| BsiSI | CCGG | 2 cut(s) | 155, 201 |
| BslFI | GGGAC | 1 cut(s) | 606 |
| BslI | CCNNNNNNNGG | 1 cut(s) | 243 |
| BsmAI | GTCTC | 1 cut(s) | 690 |
| BsmFI | GGGAC | 1 cut(s) | 606 |
| BsmI | GAATGC | 1 cut(s) | 435 |
| BsnI | GGCC | 2 cut(s) | 800, 863 |
| Bso31I | GGTCTC | 1 cut(s) | 690 |
| Bsp1286I | GDGCHC | 3 cut(s) | 53, 118, 607 |
| Bsp1407I | TGTACA | 1 cut(s) | 846 |
| Bsp143I | GATC | 5 cut(s) | 66, 132, 476, 642, 887 |
| BspACI | CCGC | 1 cut(s) | 864 |
| BspANI | GGCC | 2 cut(s) | 800, 863 |
| BspCNI | CTCAG | 1 cut(s) | 841 |
| BspDI | ATCGAT | 1 cut(s) | 180 |
| BspHI | TCATGA | 1 cut(s) | 63 |
| BspLI | GGNNCC | 2 cut(s) | 199, 834 |
| BspMAI | CTGCAG | 1 cut(s) | 112 |
| BspMI | ACCTGC | 1 cut(s) | 101 |
| BspPI | GGATC | 3 cut(s) | 140, 484, 882 |
| BspT107I | GGYRCC | 1 cut(s) | 197 |
| BspTNI | GGTCTC | 1 cut(s) | 690 |
| BsrGI | TGTACA | 1 cut(s) | 846 |
| BssECI | CCNNGG | 3 cut(s) | 242, 366, 735 |
| BssMI | GATC | 5 cut(s) | 66, 132, 476, 642, 887 |
| BssT1I | CCWWGG | 1 cut(s) | 366 |
| Bst2UI | CCWGG | 2 cut(s) | 243, 762 |
| Bst4CI | ACNGT | 5 cut(s) | 143, 380, 656, 817, 846 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 221 |
| BstAUI | TGTACA | 1 cut(s) | 846 |
| BstDEI | CTNAG | 2 cut(s) | 599, 828 |
| BstF5I | GGATG | 1 cut(s) | 708 |
| BstH2I | RGCGCY | 1 cut(s) | 827 |
| BstHHI | GCGC | 1 cut(s) | 826 |
| BstKTI | GATC | 5 cut(s) | 69, 135, 479, 645, 890 |
| BstMAI | GTCTC | 1 cut(s) | 690 |
| BstMBI | GATC | 5 cut(s) | 66, 132, 476, 642, 887 |
| BstMWI | GCNNNNNNNGC | 6 cut(s) | 113, 206, 215, 221, 588, 860 |
| BstNI | CCWGG | 2 cut(s) | 243, 762 |
| BstNSI | RCATGY | 1 cut(s) | 686 |
| BstSCI | CCNGG | 2 cut(s) | 241, 760 |
| BstSFI | CTRYAG | 1 cut(s) | 108 |
| BstSLI | GKGCMC | 1 cut(s) | 118 |
| BstV1I | GCAGC | 5 cut(s) | 94, 227, 575, 833, 898 |
| BstX2I | RGATCY | 1 cut(s) | 887 |
| BstYI | RGATCY | 1 cut(s) | 887 |
| Bsu15I | ATCGAT | 1 cut(s) | 180 |
| Bsu36I | CCTNAGG | 1 cut(s) | 828 |
| BsuI | GTATCC | 1 cut(s) | 340 |
| BsuRI | GGCC | 2 cut(s) | 800, 863 |
| BsuTUI | ATCGAT | 1 cut(s) | 180 |
| BtsCI | GGATG | 1 cut(s) | 708 |
| BtsIMutI | CAGTG | 1 cut(s) | 486 |
| BveI | ACCTGC | 1 cut(s) | 101 |
| CciI | TCATGA | 1 cut(s) | 63 |
| CfoI | GCGC | 1 cut(s) | 826 |
| ClaI | ATCGAT | 1 cut(s) | 180 |
| Csp6I | GTAC | 2 cut(s) | 773, 847 |
| CviAII | CATG | 5 cut(s) | 64, 677, 683, 892, 907 |
| CviQI | GTAC | 2 cut(s) | 773, 847 |
| DdeI | CTNAG | 2 cut(s) | 599, 828 |
| DpnI | GATC | 5 cut(s) | 68, 134, 478, 644, 889 |
| DpnII | GATC | 5 cut(s) | 66, 132, 476, 642, 887 |
| EaeI | YGGCCR | 2 cut(s) | 798, 861 |
| Eco130I | CCWWGG | 1 cut(s) | 366 |
| Eco24I | GRGCYC | 1 cut(s) | 53 |
| Eco31I | GGTCTC | 1 cut(s) | 690 |
| Eco32I | GATATC | 1 cut(s) | 251 |
| Eco57I | CTGAAG | 1 cut(s) | 762 |
| Eco81I | CCTNAGG | 1 cut(s) | 828 |
| EcoRII | CCWGG | 2 cut(s) | 241, 760 |
| EcoRV | GATATC | 1 cut(s) | 251 |
| EcoT14I | CCWWGG | 1 cut(s) | 366 |
| EcoT38I | GRGCYC | 1 cut(s) | 53 |
| ErhI | CCWWGG | 1 cut(s) | 366 |
| FaeI | CATG | 5 cut(s) | 67, 680, 686, 895, 910 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 610, 642 |
| FaqI | GGGAC | 1 cut(s) | 606 |
| FatI | CATG | 5 cut(s) | 63, 676, 682, 891, 906 |
| FauNDI | CATATG | 1 cut(s) | 559 |
| FbaI | TGATCA | 1 cut(s) | 66 |
| Fnu4HI | GCNGC | 6 cut(s) | 108, 216, 589, 822, 864, 912 |
| FokI | GGATG | 1 cut(s) | 695 |
| FriOI | GRGCYC | 1 cut(s) | 53 |
| Fsp4HI | GCNGC | 6 cut(s) | 108, 216, 589, 822, 864, 912 |
| GlaI | GCGC | 1 cut(s) | 825 |
| GluI | GCNGC | 6 cut(s) | 108, 216, 589, 822, 864, 912 |
| GsaI | CCCAGC | 3 cut(s) | 30, 50, 396 |
| GsuI | CTGGAG | 1 cut(s) | 561 |
| HaeII | RGCGCY | 1 cut(s) | 827 |
| HaeIII | GGCC | 2 cut(s) | 800, 863 |
| HapII | CCGG | 2 cut(s) | 155, 201 |
| HhaI | GCGC | 1 cut(s) | 826 |
| Hin1II | CATG | 5 cut(s) | 67, 680, 686, 895, 910 |
| Hin6I | GCGC | 1 cut(s) | 824 |
| HinP1I | GCGC | 1 cut(s) | 824 |
| HincII | GTYRAC | 1 cut(s) | 871 |
| HindII | GTYRAC | 1 cut(s) | 871 |
| HinfI | GANTC | 1 cut(s) | 293 |
| HpaII | CCGG | 2 cut(s) | 155, 201 |
| HphI | GGTGA | 4 cut(s) | 155, 532, 696, 803 |
| Hpy166II | GTNNAC | 2 cut(s) | 116, 871 |
| Hpy188I | TCNGA | 3 cut(s) | 137, 385, 887 |
| Hpy188III | TCNNGA | 2 cut(s) | 64, 275 |
| Hpy8I | GTNNAC | 2 cut(s) | 116, 871 |
| HpyAV | CCTTC | 4 cut(s) | 337, 509, 711, 786 |
| HpyCH4III | ACNGT | 5 cut(s) | 143, 380, 656, 817, 846 |
| HpyCH4V | TGCA | 6 cut(s) | 110, 116, 215, 287, 591, 895 |
| HpyF10VI | GCNNNNNNNGC | 6 cut(s) | 113, 206, 215, 221, 588, 860 |
| HpyF3I | CTNAG | 2 cut(s) | 599, 828 |
| Hsp92II | CATG | 5 cut(s) | 67, 680, 686, 895, 910 |
| HspAI | GCGC | 1 cut(s) | 824 |
| Ksp22I | TGATCA | 1 cut(s) | 66 |
| Kzo9I | GATC | 5 cut(s) | 66, 132, 476, 642, 887 |
| LmnI | GCTCC | 2 cut(s) | 568, 610 |
| Lsp1109I | GCAGC | 5 cut(s) | 94, 227, 575, 833, 898 |
| LweI | GCATC | 1 cut(s) | 292 |
| MaeIII | GTNAC | 1 cut(s) | 481 |
| MalI | GATC | 5 cut(s) | 68, 134, 478, 644, 889 |
| MboI | GATC | 5 cut(s) | 66, 132, 476, 642, 887 |
| MboII | GAAGA | 2 cut(s) | 52, 290 |
| MflI | RGATCY | 1 cut(s) | 887 |
| MhlI | GDGCHC | 3 cut(s) | 53, 118, 607 |
| MlsI | TGGCCA | 1 cut(s) | 800 |
| MluCI | AATT | 3 cut(s) | 98, 257, 916 |
| MluNI | TGGCCA | 1 cut(s) | 800 |
| MlyI | GAGTC | 1 cut(s) | 302 |
| Mox20I | TGGCCA | 1 cut(s) | 800 |
| MroXI | GAANNNNTTC | 1 cut(s) | 98 |
| MscI | TGGCCA | 1 cut(s) | 800 |
| MseI | TTAA | 1 cut(s) | 919 |
| MslI | CAYNNNNRTG | 1 cut(s) | 681 |
| Msp20I | TGGCCA | 1 cut(s) | 800 |
| MspA1I | CMGCKG | 2 cut(s) | 588, 866 |
| MspI | CCGG | 2 cut(s) | 155, 201 |
| MspR9I | CCNGG | 2 cut(s) | 243, 762 |
| Mva1269I | GAATGC | 1 cut(s) | 435 |
| MvaI | CCWGG | 2 cut(s) | 243, 762 |
| MwoI | GCNNNNNNNGC | 6 cut(s) | 113, 206, 215, 221, 588, 860 |
| NdeI | CATATG | 1 cut(s) | 559 |
| NdeII | GATC | 5 cut(s) | 66, 132, 476, 642, 887 |
| NlaIII | CATG | 5 cut(s) | 67, 680, 686, 895, 910 |
| NlaIV | GGNNCC | 2 cut(s) | 199, 834 |
| NmuCI | GTSAC | 1 cut(s) | 481 |
| NspI | RCATGY | 1 cut(s) | 686 |
| PagI | TCATGA | 1 cut(s) | 63 |
| PaqCI | CACCTGC | 1 cut(s) | 101 |
| PctI | GAATGC | 1 cut(s) | 435 |
| PdmI | GAANNNNTTC | 1 cut(s) | 98 |
| PkrI | GCNGC | 6 cut(s) | 109, 217, 590, 823, 865, 913 |
| PleI | GAGTC | 1 cut(s) | 301 |
| PpsI | GAGTC | 1 cut(s) | 301 |
| Psp6I | CCWGG | 2 cut(s) | 241, 760 |
| PspFI | CCCAGC | 3 cut(s) | 26, 46, 392 |
| PspGI | CCWGG | 2 cut(s) | 241, 760 |
| PspN4I | GGNNCC | 2 cut(s) | 199, 834 |
| PstI | CTGCAG | 1 cut(s) | 112 |
| PsuI | RGATCY | 1 cut(s) | 887 |
| PvuII | CAGCTG | 1 cut(s) | 588 |
| RsaI | GTAC | 2 cut(s) | 774, 848 |
| RsaNI | GTAC | 2 cut(s) | 773, 847 |
| RseI | CAYNNNNRTG | 1 cut(s) | 681 |
| SaqAI | TTAA | 1 cut(s) | 919 |
| SatI | GCNGC | 6 cut(s) | 108, 216, 589, 822, 864, 912 |
| Sau3AI | GATC | 5 cut(s) | 66, 132, 476, 642, 887 |
| SchI | GAGTC | 1 cut(s) | 302 |
| ScrFI | CCNGG | 2 cut(s) | 243, 762 |
| SduI | GDGCHC | 3 cut(s) | 53, 118, 607 |
| SfaNI | GCATC | 1 cut(s) | 292 |
| SfcI | CTRYAG | 1 cut(s) | 108 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 681 |
| Sse9I | AATT | 3 cut(s) | 98, 257, 916 |
| SsiI | CCGC | 1 cut(s) | 864 |
| StyD4I | CCNGG | 2 cut(s) | 241, 760 |
| StyI | CCWWGG | 1 cut(s) | 366 |
| TaaI | ACNGT | 5 cut(s) | 143, 380, 656, 817, 846 |
| TaqI | TCGA | 3 cut(s) | 180, 296, 513 |
| TasI | AATT | 3 cut(s) | 98, 257, 916 |
| TatI | WGTACW | 1 cut(s) | 846 |
| TauI | GCSGC | 1 cut(s) | 866 |
| Tru1I | TTAA | 1 cut(s) | 919 |
| Tru9I | TTAA | 1 cut(s) | 919 |
| TscAI | CASTG | 1 cut(s) | 486 |
| TseFI | GTSAC | 1 cut(s) | 481 |
| TseI | GCWGC | 5 cut(s) | 107, 215, 588, 821, 911 |
| Tsp45I | GTSAC | 1 cut(s) | 481 |
| TspDTI | ATGAA | 2 cut(s) | 52, 409 |
| TspRI | CASTG | 1 cut(s) | 486 |
| VneI | GTGCAC | 1 cut(s) | 114 |
| XceI | RCATGY | 1 cut(s) | 686 |
| XcmI | CCANNNNNNNNNTGG | 2 cut(s) | 314, 463 |
| XmnI | GAANNNNTTC | 1 cut(s) | 98 |