squalene
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AatII | GACGTC | 1 cut(s) | 27 |
| Acc16I | TGCGCA | 1 cut(s) | 518 |
| AccB1I | GGYRCC | 1 cut(s) | 38 |
| AclWI | GGATC | 2 cut(s) | 397, 620 |
| AcuI | CTGAAG | 1 cut(s) | 690 |
| AcyI | GRCGYC | 2 cut(s) | 24, 88 |
| AfaI | GTAC | 4 cut(s) | 19, 96, 687, 702 |
| AflIII | ACRYGT | 2 cut(s) | 97, 610 |
| AgsI | TTSAA | 3 cut(s) | 510, 545, 739 |
| AjiI | CACGTC | 1 cut(s) | 100 |
| AjnI | CCWGG | 2 cut(s) | 154, 688 |
| AloI | GAACNNNNNNTCC | 2 cut(s) | 460, 492 |
| AluBI | AGCT | 5 cut(s) | 268, 356, 589, 713, 845 |
| AluI | AGCT | 5 cut(s) | 268, 356, 589, 713, 845 |
| Alw21I | GWGCWC | 1 cut(s) | 535 |
| Alw26I | GTCTC | 1 cut(s) | 105 |
| Alw44I | GTGCAC | 1 cut(s) | 531 |
| AlwI | GGATC | 2 cut(s) | 397, 620 |
| ApaLI | GTGCAC | 1 cut(s) | 531 |
| ApeKI | GCWGC | 5 cut(s) | 56, 151, 356, 501, 752 |
| AspLEI | GCGC | 1 cut(s) | 519 |
| AsuHPI | GGTGA | 2 cut(s) | 152, 731 |
| BaeGI | GKGCMC | 1 cut(s) | 535 |
| BaeI | ACNNNNGTAYC | 2 cut(s) | 684, 717 |
| BanI | GGYRCC | 1 cut(s) | 38 |
| Bbv12I | GWGCWC | 1 cut(s) | 535 |
| BbvCI | CCTCAGC | 1 cut(s) | 756 |
| BbvI | GCAGC | 5 cut(s) | 43, 163, 343, 488, 739 |
| BccI | CCATC | 3 cut(s) | 245, 491, 659 |
| BciT130I | CCWGG | 2 cut(s) | 156, 690 |
| BcoDI | GTCTC | 1 cut(s) | 105 |
| BisI | GCNGC | 5 cut(s) | 57, 152, 357, 502, 753 |
| BlsI | GCNGC | 5 cut(s) | 58, 153, 358, 503, 754 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 690 |
| BmgBI | CACGTC | 1 cut(s) | 100 |
| BmiI | GGNNCC | 2 cut(s) | 40, 694 |
| BmrFI | CCNGG | 2 cut(s) | 156, 690 |
| BmsI | GCATC | 2 cut(s) | 205, 826 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 150, 182 |
| BpmI | CTGGAG | 2 cut(s) | 177, 474 |
| Bpu10I | CCTNAGC | 2 cut(s) | 78, 756 |
| BpuEI | CTTGAG | 3 cut(s) | 136, 152, 209 |
| BsaAI | YACGTR | 1 cut(s) | 635 |
| BsaHI | GRCGYC | 2 cut(s) | 24, 88 |
| BsaJI | CCNNGG | 1 cut(s) | 279 |
| BsaXI | ACNNNNNCTCC | 2 cut(s) | 460, 490 |
| BseBI | CCWGG | 2 cut(s) | 156, 690 |
| BseDI | CCNNGG | 1 cut(s) | 279 |
| BseGI | GGATG | 3 cut(s) | 333, 438, 688 |
| BseMII | CTCAG | 2 cut(s) | 541, 747 |
| BseRI | GAGGAG | 4 cut(s) | 206, 773, 776, 791 |
| BseSI | GKGCMC | 1 cut(s) | 535 |
| BseXI | GCAGC | 5 cut(s) | 43, 163, 343, 488, 739 |
| BseYI | CCCAGC | 1 cut(s) | 305 |
| BshNI | GGYRCC | 1 cut(s) | 38 |
| BsiHKAI | GWGCWC | 1 cut(s) | 535 |
| BsiSI | CCGG | 1 cut(s) | 42 |
| BslFI | GGGAC | 1 cut(s) | 534 |
| BsmAI | GTCTC | 1 cut(s) | 105 |
| BsmFI | GGGAC | 1 cut(s) | 534 |
| Bsp1286I | GDGCHC | 1 cut(s) | 535 |
| Bsp1407I | TGTACA | 1 cut(s) | 94 |
| Bsp143I | GATC | 5 cut(s) | 389, 570, 625, 805, 826 |
| BspCNI | CTCAG | 2 cut(s) | 540, 748 |
| BspLI | GGNNCC | 2 cut(s) | 40, 694 |
| BspPI | GGATC | 2 cut(s) | 397, 620 |
| BspQI | GCTCTTC | 1 cut(s) | 786 |
| BspT107I | GGYRCC | 1 cut(s) | 38 |
| BsrGI | TGTACA | 1 cut(s) | 94 |
| BssECI | CCNNGG | 1 cut(s) | 279 |
| BssMI | GATC | 5 cut(s) | 389, 570, 625, 805, 826 |
| BssNI | GRCGYC | 2 cut(s) | 24, 88 |
| BssT1I | CCWWGG | 1 cut(s) | 279 |
| Bst2UI | CCWGG | 2 cut(s) | 156, 690 |
| Bst4CI | ACNGT | 3 cut(s) | 274, 293, 584 |
| Bst6I | CTCTTC | 1 cut(s) | 786 |
| BstACI | GRCGYC | 2 cut(s) | 24, 88 |
| BstAUI | TGTACA | 1 cut(s) | 94 |
| BstBAI | YACGTR | 1 cut(s) | 635 |
| BstDEI | CTNAG | 4 cut(s) | 78, 527, 756, 812 |
| BstF5I | GGATG | 3 cut(s) | 333, 438, 688 |
| BstHHI | GCGC | 1 cut(s) | 519 |
| BstKTI | GATC | 5 cut(s) | 392, 573, 628, 808, 829 |
| BstMAI | GTCTC | 1 cut(s) | 105 |
| BstMBI | GATC | 5 cut(s) | 389, 570, 625, 805, 826 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 501 |
| BstNI | CCWGG | 2 cut(s) | 156, 690 |
| BstNSI | RCATGY | 2 cut(s) | 599, 614 |
| BstSCI | CCNGG | 2 cut(s) | 154, 688 |
| BstSLI | GKGCMC | 1 cut(s) | 535 |
| BstV1I | GCAGC | 5 cut(s) | 43, 163, 343, 488, 739 |
| BstX2I | RGATCY | 1 cut(s) | 625 |
| BstYI | RGATCY | 1 cut(s) | 625 |
| BtgZI | GCGATG | 1 cut(s) | 510 |
| BtrI | CACGTC | 1 cut(s) | 100 |
| BtsCI | GGATG | 3 cut(s) | 333, 438, 688 |
| BtsIMutI | CAGTG | 2 cut(s) | 399, 535 |
| CfoI | GCGC | 1 cut(s) | 519 |
| CseI | GACGC | 1 cut(s) | 96 |
| Csp6I | GTAC | 4 cut(s) | 18, 95, 686, 701 |
| CviAII | CATG | 4 cut(s) | 92, 596, 605, 611 |
| CviQI | GTAC | 4 cut(s) | 18, 95, 686, 701 |
| DdeI | CTNAG | 4 cut(s) | 78, 527, 756, 812 |
| DpnI | GATC | 5 cut(s) | 391, 572, 627, 807, 828 |
| DpnII | GATC | 5 cut(s) | 389, 570, 625, 805, 826 |
| Eam1104I | CTCTTC | 1 cut(s) | 786 |
| EarI | CTCTTC | 1 cut(s) | 786 |
| Eco130I | CCWWGG | 1 cut(s) | 279 |
| Eco57I | CTGAAG | 1 cut(s) | 690 |
| EcoRII | CCWGG | 2 cut(s) | 154, 688 |
| EcoT14I | CCWWGG | 1 cut(s) | 279 |
| ErhI | CCWWGG | 1 cut(s) | 279 |
| FaeI | CATG | 4 cut(s) | 95, 599, 608, 614 |
| FaiI | YATR | 9 cut(s) | 93, 237, 472, 474, 597, 606, 612, 746, 823 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 538, 570 |
| FaqI | GGGAC | 1 cut(s) | 534 |
| FatI | CATG | 4 cut(s) | 91, 595, 604, 610 |
| FauNDI | CATATG | 1 cut(s) | 472 |
| Fnu4HI | GCNGC | 5 cut(s) | 57, 152, 357, 502, 753 |
| FokI | GGATG | 3 cut(s) | 320, 445, 695 |
| Fsp4HI | GCNGC | 5 cut(s) | 57, 152, 357, 502, 753 |
| FspI | TGCGCA | 1 cut(s) | 518 |
| GlaI | GCGC | 1 cut(s) | 518 |
| GluI | GCNGC | 5 cut(s) | 57, 152, 357, 502, 753 |
| GsaI | CCCAGC | 1 cut(s) | 309 |
| GsuI | CTGGAG | 2 cut(s) | 177, 474 |
| HapII | CCGG | 1 cut(s) | 42 |
| HgaI | GACGC | 1 cut(s) | 96 |
| HhaI | GCGC | 1 cut(s) | 519 |
| Hin1I | GRCGYC | 2 cut(s) | 24, 88 |
| Hin1II | CATG | 4 cut(s) | 95, 599, 608, 614 |
| Hin6I | GCGC | 1 cut(s) | 517 |
| HinP1I | GCGC | 1 cut(s) | 517 |
| HinfI | GANTC | 2 cut(s) | 206, 772 |
| HpaII | CCGG | 1 cut(s) | 42 |
| HphI | GGTGA | 2 cut(s) | 152, 731 |
| Hpy166II | GTNNAC | 2 cut(s) | 97, 533 |
| Hpy188I | TCNGA | 1 cut(s) | 298 |
| Hpy188III | TCNNGA | 2 cut(s) | 188, 785 |
| Hpy8I | GTNNAC | 2 cut(s) | 97, 533 |
| Hpy99I | CGWCG | 2 cut(s) | 26, 29 |
| HpyAV | CCTTC | 4 cut(s) | 77, 532, 639, 714 |
| HpyCH4III | ACNGT | 3 cut(s) | 274, 293, 584 |
| HpyCH4IV | ACGT | 3 cut(s) | 24, 99, 634 |
| HpyCH4V | TGCA | 6 cut(s) | 151, 200, 359, 533, 599, 839 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 501 |
| HpyF3I | CTNAG | 4 cut(s) | 78, 527, 756, 812 |
| HpySE526I | ACGT | 3 cut(s) | 24, 99, 634 |
| Hsp92I | GRCGYC | 2 cut(s) | 24, 88 |
| Hsp92II | CATG | 4 cut(s) | 95, 599, 608, 614 |
| HspAI | GCGC | 1 cut(s) | 517 |
| Kzo9I | GATC | 5 cut(s) | 389, 570, 625, 805, 826 |
| LguI | GCTCTTC | 1 cut(s) | 786 |
| LmnI | GCTCC | 1 cut(s) | 481 |
| Lsp1109I | GCAGC | 5 cut(s) | 43, 163, 343, 488, 739 |
| LweI | GCATC | 2 cut(s) | 205, 826 |
| MaeII | ACGT | 3 cut(s) | 24, 99, 634 |
| MaeIII | GTNAC | 1 cut(s) | 394 |
| MalI | GATC | 5 cut(s) | 391, 572, 627, 807, 828 |
| MboI | GATC | 5 cut(s) | 389, 570, 625, 805, 826 |
| MboII | GAAGA | 3 cut(s) | 773, 788, 800 |
| MfeI | CAATTG | 2 cut(s) | 210, 486 |
| MflI | RGATCY | 1 cut(s) | 625 |
| MhlI | GDGCHC | 1 cut(s) | 535 |
| MluCI | AATT | 4 cut(s) | 132, 210, 377, 486 |
| MlyI | GAGTC | 2 cut(s) | 215, 766 |
| MnlI | CCTC | 9 cut(s) | 152, 184, 403, 451, 562, 751, 754, 757, 812 |
| MslI | CAYNNNNRTG | 1 cut(s) | 609 |
| MspA1I | CMGCKG | 1 cut(s) | 845 |
| MspI | CCGG | 1 cut(s) | 42 |
| MspR9I | CCNGG | 2 cut(s) | 156, 690 |
| MunI | CAATTG | 2 cut(s) | 210, 486 |
| MvaI | CCWGG | 2 cut(s) | 156, 690 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 501 |
| NdeI | CATATG | 1 cut(s) | 472 |
| NdeII | GATC | 5 cut(s) | 389, 570, 625, 805, 826 |
| NlaIII | CATG | 4 cut(s) | 95, 599, 608, 614 |
| NlaIV | GGNNCC | 2 cut(s) | 40, 694 |
| NmuCI | GTSAC | 1 cut(s) | 394 |
| NsbI | TGCGCA | 1 cut(s) | 518 |
| NspI | RCATGY | 2 cut(s) | 599, 614 |
| PciI | ACATGT | 1 cut(s) | 610 |
| PciSI | GCTCTTC | 1 cut(s) | 786 |
| PflFI | GACNNNGTC | 1 cut(s) | 26 |
| PkrI | GCNGC | 5 cut(s) | 58, 153, 358, 503, 754 |
| PleI | GAGTC | 2 cut(s) | 214, 766 |
| PpsI | GAGTC | 2 cut(s) | 214, 766 |
| Ppu21I | YACGTR | 1 cut(s) | 635 |
| PscI | ACATGT | 1 cut(s) | 610 |
| Psp6I | CCWGG | 2 cut(s) | 154, 688 |
| PspFI | CCCAGC | 1 cut(s) | 305 |
| PspGI | CCWGG | 2 cut(s) | 154, 688 |
| PspN4I | GGNNCC | 2 cut(s) | 40, 694 |
| PsuI | RGATCY | 1 cut(s) | 625 |
| PsyI | GACNNNGTC | 1 cut(s) | 26 |
| PvuII | CAGCTG | 1 cut(s) | 845 |
| RsaI | GTAC | 4 cut(s) | 19, 96, 687, 702 |
| RsaNI | GTAC | 4 cut(s) | 18, 95, 686, 701 |
| RseI | CAYNNNNRTG | 1 cut(s) | 609 |
| SapI | GCTCTTC | 1 cut(s) | 786 |
| SatI | GCNGC | 5 cut(s) | 57, 152, 357, 502, 753 |
| Sau3AI | GATC | 5 cut(s) | 389, 570, 625, 805, 826 |
| SchI | GAGTC | 2 cut(s) | 215, 766 |
| ScrFI | CCNGG | 2 cut(s) | 156, 690 |
| SduI | GDGCHC | 1 cut(s) | 535 |
| SfaNI | GCATC | 2 cut(s) | 205, 826 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 609 |
| SmlI | CTYRAG | 3 cut(s) | 115, 167, 188 |
| SmoI | CTYRAG | 3 cut(s) | 115, 167, 188 |
| Sse9I | AATT | 4 cut(s) | 132, 210, 377, 486 |
| StyD4I | CCNGG | 2 cut(s) | 154, 688 |
| StyI | CCWWGG | 1 cut(s) | 279 |
| TaaI | ACNGT | 3 cut(s) | 274, 293, 584 |
| TaiI | ACGT | 3 cut(s) | 27, 102, 637 |
| TaqI | TCGA | 3 cut(s) | 105, 408, 804 |
| TasI | AATT | 4 cut(s) | 132, 210, 377, 486 |
| TatI | WGTACW | 1 cut(s) | 94 |
| TscAI | CASTG | 2 cut(s) | 399, 535 |
| TseFI | GTSAC | 1 cut(s) | 394 |
| TseI | GCWGC | 5 cut(s) | 56, 151, 356, 501, 752 |
| Tsp45I | GTSAC | 1 cut(s) | 394 |
| TspDTI | ATGAA | 1 cut(s) | 322 |
| TspRI | CASTG | 2 cut(s) | 399, 535 |
| Tth111I | GACNNNGTC | 1 cut(s) | 26 |
| VneI | GTGCAC | 1 cut(s) | 531 |
| XceI | RCATGY | 2 cut(s) | 599, 614 |
| ZraI | GACGTC | 1 cut(s) | 25 |