Rmu_sc0000989.1_g000003

squalene

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0000989.1
Physical Location & Seq
Forward (+)
9541 .. 11215
1675 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0000989.1_g000003.1.cds

Sequence Viewer

Length: 868 bp
atgatcatcagtactactcttggtggaaacaaaaagttcaaggctttaaatggaggagttaagagcaatgggtttggaaacagggagtttcagccggaaatggaggaggagaaaggtactgacgtagtcattgtcggtgccggagttgccggtgcagctcttgcttacactcttgccgaggaaggtcgttgtgtgcatgttatcgaaagagacttgaccgagccagacagagttgttggtgagctgttgcagcctggggactgtgcaaatgagtcaattgatgctcagaaggtgtttggttatgctctttacaaagaaggcaaggatacaaaactgacatatcccttagagaaatacagttcagatgtggctgggagaagtttccacaatgggcattttatccaaagaatgcgtgaaaaaaccatgactctttcgaatgtaaaattggaacaaggatcagtgacaacactaatcgaggaaaagggcattgttaaaggggtgatttacaagaacaaggctggagaggagatgagatcatatgctccactaacaatcatgtgtgatggctgcttttcaaatctgtgcaagtctctcagtgcaccaaaggttgaaagtccctcatgttttgttggtttgatcttggagaactgtgaacttccacatgcaaatcatggacatgtgattttgggagacccttcacccatcctgttttatcctatcagtagtgccaaggttcgttgtttggtggatgtacccggaacaaaagtaccttcagtagctagtggtgaaatggctaactatttgaaaactgtggtggctcctcaggtatctttcaataacttgcttcaagtatcattcactaatattt
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

289

Amino Acids

31.3

Weight (kDa)

6.11

Isoelectric Point (pI)

38.48

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB1I GGYRCC 1 cut(s) 137
AclWI GGATC 1 cut(s) 463
AcuI CTGAAG 1 cut(s) 756
AfaI GTAC 4 cut(s) 13, 118, 753, 768
AflIII ACRYGT 1 cut(s) 676
AgsI TTSAA 6 cut(s) 40, 576, 611, 805, 835, 848
AjnI CCWGG 1 cut(s) 253
AjuI GAANNNNNNNTTGG 2 cut(s) 428, 460
AluBI AGCT 3 cut(s) 158, 244, 779
AluI AGCT 3 cut(s) 158, 244, 779
Alw21I GWGCWC 1 cut(s) 601
Alw26I GTCTC 3 cut(s) 204, 594, 684
Alw44I GTGCAC 1 cut(s) 597
AlwI GGATC 1 cut(s) 463
ApaLI GTGCAC 1 cut(s) 597
ApeKI GCWGC 3 cut(s) 155, 250, 567
AsuC2I CCSGG 1 cut(s) 756
AsuHPI GGTGA 4 cut(s) 251, 511, 690, 797
AsuII TTCGAA 1 cut(s) 434
AxyI CCTNAGG 1 cut(s) 822
BaeGI GKGCMC 1 cut(s) 601
BaeI ACNNNNGTAYC 4 cut(s) 108, 141, 750, 783
BanI GGYRCC 1 cut(s) 137
Bbv12I GWGCWC 1 cut(s) 601
BbvI GCAGC 3 cut(s) 167, 262, 554
BccI CCATC 2 cut(s) 557, 710
BciT130I CCWGG 1 cut(s) 255
BciVI GTATCC 1 cut(s) 319
BclI TGATCA 1 cut(s) 3
BcnI CCSGG 1 cut(s) 756
BcoDI GTCTC 3 cut(s) 204, 594, 684
BfaI CTAG 1 cut(s) 780
BfuI GTATCC 1 cut(s) 319
BisI GCNGC 3 cut(s) 156, 251, 568
BlsI GCNGC 3 cut(s) 157, 252, 569
BmcAI AGTACT 1 cut(s) 13
Bme1390I CCNGG 2 cut(s) 255, 756
BmiI GGNNCC 2 cut(s) 139, 819
BmrFI CCNGG 2 cut(s) 255, 756
BmsI GCATC 1 cut(s) 271
BpmI CTGGAG 1 cut(s) 540
Bpu14I TTCGAA 1 cut(s) 434
BpuMI CCSGG 1 cut(s) 756
BsaI GGTCTC 1 cut(s) 684
BsaJI CCNNGG 3 cut(s) 177, 254, 729
Bse118I RCCGGY 1 cut(s) 149
Bse21I CCTNAGG 1 cut(s) 822
Bse3DI GCAATG 1 cut(s) 73
BseBI CCWGG 1 cut(s) 255
BseDI CCNNGG 3 cut(s) 177, 254, 729
BseGI GGATG 2 cut(s) 702, 754
BseMI GCAATG 1 cut(s) 73
BseMII CTCAG 3 cut(s) 299, 607, 836
BseRI GAGGAG 5 cut(s) 69, 119, 122, 539, 810
BseSI GKGCMC 1 cut(s) 601
BseXI GCAGC 3 cut(s) 167, 262, 554
BseYI CCCAGC 1 cut(s) 371
BsgI GTGCAG 1 cut(s) 174
BshNI GGYRCC 1 cut(s) 137
BsiHKAI GWGCWC 1 cut(s) 601
BsiSI CCGG 4 cut(s) 95, 141, 150, 756
BslFI GGGAC 2 cut(s) 272, 600
BsmAI GTCTC 3 cut(s) 204, 594, 684
BsmFI GGGAC 2 cut(s) 272, 600
BsmI GAATGC 1 cut(s) 414
Bso31I GGTCTC 1 cut(s) 684
Bsp119I TTCGAA 1 cut(s) 434
Bsp1286I GDGCHC 1 cut(s) 601
Bsp143I GATC 4 cut(s) 3, 455, 533, 636
BspCNI CTCAG 3 cut(s) 298, 606, 835
BspLI GGNNCC 2 cut(s) 139, 819
BspPI GGATC 1 cut(s) 463
BspT104I TTCGAA 1 cut(s) 434
BspT107I GGYRCC 1 cut(s) 137
BspTNI GGTCTC 1 cut(s) 684
BsrDI GCAATG 1 cut(s) 73
BsrFI RCCGGY 1 cut(s) 149
BssAI RCCGGY 1 cut(s) 149
BssECI CCNNGG 3 cut(s) 177, 254, 729
BssMI GATC 4 cut(s) 3, 455, 533, 636
BssT1I CCWWGG 1 cut(s) 729
Bst2UI CCWGG 1 cut(s) 255
Bst4CI ACNGT 4 cut(s) 263, 359, 650, 811
BstAPI GCANNNNNTGC 1 cut(s) 161
BstBI TTCGAA 1 cut(s) 434
BstDEI CTNAG 4 cut(s) 285, 346, 593, 822
BstF5I GGATG 2 cut(s) 702, 754
BstKTI GATC 4 cut(s) 6, 458, 536, 639
BstMAI GTCTC 3 cut(s) 204, 594, 684
BstMBI GATC 4 cut(s) 3, 455, 533, 636
BstMWI GCNNNNNNNGC 4 cut(s) 146, 155, 161, 250
BstNI CCWGG 1 cut(s) 255
BstNSI RCATGY 3 cut(s) 200, 665, 680
BstSCI CCNGG 2 cut(s) 253, 754
BstSLI GKGCMC 1 cut(s) 601
BstV1I GCAGC 3 cut(s) 167, 262, 554
Bsu36I CCTNAGG 1 cut(s) 822
BsuI GTATCC 1 cut(s) 319
BtsCI GGATG 2 cut(s) 702, 754
BtsIMutI CAGTG 2 cut(s) 465, 601
Cfr10I RCCGGY 1 cut(s) 149
Csp6I GTAC 4 cut(s) 12, 117, 752, 767
CviAII CATG 7 cut(s) 197, 424, 556, 621, 662, 671, 677
CviQI GTAC 4 cut(s) 12, 117, 752, 767
DdeI CTNAG 4 cut(s) 285, 346, 593, 822
DpnI GATC 4 cut(s) 5, 457, 535, 638
DpnII GATC 4 cut(s) 3, 455, 533, 636
DraI TTTAAA 1 cut(s) 48
Eco130I CCWWGG 1 cut(s) 729
Eco31I GGTCTC 1 cut(s) 684
Eco57I CTGAAG 1 cut(s) 756
Eco81I CCTNAGG 1 cut(s) 822
EcoRII CCWGG 1 cut(s) 253
EcoT14I CCWWGG 1 cut(s) 729
ErhI CCWWGG 1 cut(s) 729
FaeI CATG 7 cut(s) 200, 427, 559, 624, 665, 674, 680
FaqI GGGAC 2 cut(s) 272, 600
FatI CATG 7 cut(s) 196, 423, 555, 620, 661, 670, 676
FauNDI CATATG 1 cut(s) 538
FbaI TGATCA 1 cut(s) 3
Fnu4HI GCNGC 3 cut(s) 156, 251, 568
FokI GGATG 2 cut(s) 689, 761
Fsp4HI GCNGC 3 cut(s) 156, 251, 568
FspBI CTAG 1 cut(s) 780
GluI GCNGC 3 cut(s) 156, 251, 568
GsaI CCCAGC 1 cut(s) 375
GsuI CTGGAG 1 cut(s) 540
HapII CCGG 4 cut(s) 95, 141, 150, 756
Hin1II CATG 7 cut(s) 200, 427, 559, 624, 665, 674, 680
HinfI GANTC 2 cut(s) 272, 427
HpaII CCGG 4 cut(s) 95, 141, 150, 756
HphI GGTGA 4 cut(s) 251, 511, 690, 797
Hpy166II GTNNAC 2 cut(s) 599, 653
Hpy188I TCNGA 2 cut(s) 288, 364
Hpy8I GTNNAC 2 cut(s) 599, 653
HpyAV CCTTC 5 cut(s) 176, 283, 311, 705, 780
HpyCH4III ACNGT 4 cut(s) 263, 359, 650, 811
HpyCH4IV ACGT 1 cut(s) 123
HpyCH4V TGCA 7 cut(s) 155, 196, 250, 266, 585, 599, 665
HpyF10VI GCNNNNNNNGC 4 cut(s) 146, 155, 161, 250
HpyF3I CTNAG 4 cut(s) 285, 346, 593, 822
HpySE526I ACGT 1 cut(s) 123
Hsp92II CATG 7 cut(s) 200, 427, 559, 624, 665, 674, 680
Ksp22I TGATCA 1 cut(s) 3
Kzo9I GATC 4 cut(s) 3, 455, 533, 636
LmnI GCTCC 2 cut(s) 547, 823
Lsp1109I GCAGC 3 cut(s) 167, 262, 554
LweI GCATC 1 cut(s) 271
MaeI CTAG 1 cut(s) 780
MaeII ACGT 1 cut(s) 123
MaeIII GTNAC 1 cut(s) 460
MalI GATC 4 cut(s) 5, 457, 535, 638
MboI GATC 4 cut(s) 3, 455, 533, 636
MfeI CAATTG 1 cut(s) 276
MhlI GDGCHC 1 cut(s) 601
MluCI AATT 2 cut(s) 276, 443
MlyI GAGTC 2 cut(s) 281, 421
MnlI CCTC 8 cut(s) 47, 97, 100, 172, 469, 517, 628, 831
MseI TTAA 3 cut(s) 47, 60, 492
MslI CAYNNNNRTG 1 cut(s) 675
MspI CCGG 4 cut(s) 95, 141, 150, 756
MspR9I CCNGG 2 cut(s) 255, 756
MunI CAATTG 1 cut(s) 276
Mva1269I GAATGC 1 cut(s) 414
MvaI CCWGG 1 cut(s) 255
MwoI GCNNNNNNNGC 4 cut(s) 146, 155, 161, 250
NciI CCSGG 1 cut(s) 756
NdeI CATATG 1 cut(s) 538
NdeII GATC 4 cut(s) 3, 455, 533, 636
NlaIII CATG 7 cut(s) 200, 427, 559, 624, 665, 674, 680
NlaIV GGNNCC 2 cut(s) 139, 819
NmeAIII GCCGAG 1 cut(s) 202
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 3 cut(s) 200, 665, 680
NspV TTCGAA 1 cut(s) 434
PciI ACATGT 1 cut(s) 676
PctI GAATGC 1 cut(s) 414
PflFI GACNNNGTC 1 cut(s) 125
PkrI GCNGC 3 cut(s) 157, 252, 569
PleI GAGTC 2 cut(s) 280, 421
PpsI GAGTC 2 cut(s) 280, 421
PscI ACATGT 1 cut(s) 676
Psp6I CCWGG 1 cut(s) 253
PspFI CCCAGC 1 cut(s) 371
PspGI CCWGG 1 cut(s) 253
PspN4I GGNNCC 2 cut(s) 139, 819
PsyI GACNNNGTC 1 cut(s) 125
RsaI GTAC 4 cut(s) 13, 118, 753, 768
RsaNI GTAC 4 cut(s) 12, 117, 752, 767
RseI CAYNNNNRTG 1 cut(s) 675
SaqAI TTAA 3 cut(s) 47, 60, 492
SatI GCNGC 3 cut(s) 156, 251, 568
Sau3AI GATC 4 cut(s) 3, 455, 533, 636
ScaI AGTACT 1 cut(s) 13
SchI GAGTC 2 cut(s) 281, 421
ScrFI CCNGG 2 cut(s) 255, 756
SduI GDGCHC 1 cut(s) 601
SfaNI GCATC 1 cut(s) 271
SfuI TTCGAA 1 cut(s) 434
SmiMI CAYNNNNRTG 1 cut(s) 675
Sse9I AATT 2 cut(s) 276, 443
SspI AATATT 1 cut(s) 865
SspMI CTAG 1 cut(s) 780
StyD4I CCNGG 2 cut(s) 253, 754
StyI CCWWGG 1 cut(s) 729
TaaI ACNGT 4 cut(s) 263, 359, 650, 811
TaiI ACGT 1 cut(s) 126
TaqI TCGA 3 cut(s) 204, 434, 474
TaqII GACCGA 1 cut(s) 233
TasI AATT 2 cut(s) 276, 443
TatI WGTACW 1 cut(s) 11
Tru1I TTAA 3 cut(s) 47, 60, 492
Tru9I TTAA 3 cut(s) 47, 60, 492
TscAI CASTG 2 cut(s) 465, 601
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 3 cut(s) 155, 250, 567
Tsp45I GTSAC 1 cut(s) 460
TspRI CASTG 2 cut(s) 465, 601
Tth111I GACNNNGTC 1 cut(s) 125
VneI GTGCAC 1 cut(s) 597
XceI RCATGY 3 cut(s) 200, 665, 680
XspI CTAG 1 cut(s) 780
ZrmI AGTACT 1 cut(s) 13
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.