MD07G1042000.v1.1

Squalene monooxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr07
OG0000108
Physical Location & Seq
Forward (+)
3522223 .. 3524792
2570 bp
Loading structure...
UTR
Exon/CDS
Intron
MD07G1042000.v1.1.491

Sequence Viewer

Length: 1335 bp
ATGGTCCCGGGACCACCCTGGTCCCTTAATGGATCTGCCCCTGCGTACGAGTGTGTTCTTGCTGGTGTCTTGGTTTCTCTGTTGAGTTCTATTTTCTTCGTCATCATAAACACCACTTTCGGCGAAAAGAAGAAGGTCGATGTCGCAAATGTGTCGGCAACCGGTGTTTTTCTTACGCCCGAGATTGAGGAAAGTACGGACGTTGTCATTGTCGGTGCCGAAGTTGCTGGTGCTGCTCTTGCTTACACTCTTGGCAAGGAAGGACGGCGTGTACATGTGATCGAAAGGAACCTGAGCGAGCCGGACAGAATTTTTGAACTATTGCAACCTGCTGGAGGCTATCTCAAGAAACATATAATTTCAAATATCGTCGGAAGAAGCTTCAACAACAGGCGTTTCATCCAAAGAATGCGTGAAAGGGCAGCAACTCTGCCAAATGTGAAATTGGAACAAGGAACTGTGACAACTCTACTTGAAGAAAAGAGCACCATCAAAGGAGTGATGTACAAGAACAAGACTGGGGAGGAGATGAGAACATATGCTCCTCTTACAATAGTAGGCGACGGCTGCTTTTCAAATCTTCGCTGCTCTATCTCTACTCCAAATATTGAAAATCTATCATGCTTCGTCGGTTTGATCTTGGAGAACTGTGAGCTTCCTCATGCAAACCATGGACATGTGATTTTGGGAGATCCTTCACCCATCCTCTTTTATCCTATCAGTAGTACTGAGGTTCGTTGTTTGGTAGATGTTCCTGGCACAAAAGTACCTTCAGTAGCTAACGGCGAAATGGCTCAGTATTTGAAAACTATCGTGGCTCCCCAAGTTCCCCGTCAACTTTTAAAGGCTTTTCTAGCAACGGTTGATAAAGGAATCATCAGAACAATGCAAAACAAAAGCATGCTGGCTGCTCCCCGACCCACTCCTGGTGCAATTTTATTGGGGGACGCATTCAACATGAGACATCCTTTAACCGGAGGAGGAATGACAGTCGCTCTTTCTGACATTGTTCTTCTAATGGATCTTCTGAGACCCCTGACTGATTTCAACGATGCACCTTTGTTGTCCAGTGTAATCTACCATAAACACATTAGCTGGTGCCCTTTACAAGGTGTTTTGGCATCACCTGACCTTGCAAGACAAGAAATGCGTGAAGCATGTTTTGATTATTTGAGCCTTGGAGGCGTCTGTTCAAATGGACCAATATCTCTACTCTCTCGTCTTAACCCTCGTCCAATCATGCCTGTTTCTCTAATTCTTTGTTGTGGCTGTCTATGGAGTCGGCCGCTTAATGATTCCATTCCCTACACCAAAAAGCTTGTGGTTGGGGGCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

445

Amino Acids

48.2

Weight (kDa)

8.39

Isoelectric Point (pI)

45.64

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 133 - 343 3.8e-06 FAD binding domain
SE PF08491 181 - 416 5.8e-84 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 337
AccB1I GGYRCC 2 cut(s) 215, 1098
AciI CCGC 1 cut(s) 1286
AclWI GGATC 3 cut(s) 40, 686, 1029
AcoI YGGCCR 1 cut(s) 1283
AcsI RAATTY 1 cut(s) 309
AcuI CTGAAG 1 cut(s) 756
AcyI GRCGYC 1 cut(s) 1185
AfaI GTAC 6 cut(s) 47, 196, 273, 506, 727, 768
AfiI CCNNNNNNNGG 4 cut(s) 335, 926, 974, 1109
AflIII ACRYGT 2 cut(s) 274, 676
AgeI ACCGGT 1 cut(s) 161
AjnI CCWGG 3 cut(s) 17, 754, 925
AloI GAACNNNNNNTCC 2 cut(s) 526, 558
AluBI AGCT 5 cut(s) 381, 655, 779, 1095, 1318
AluI AGCT 5 cut(s) 381, 655, 779, 1095, 1318
Alw21I GWGCWC 1 cut(s) 488
Alw26I GTCTC 2 cut(s) 955, 1024
AlwI GGATC 3 cut(s) 40, 686, 1029
Ama87I CYCGRG 2 cut(s) 7, 179
AoxI GGCC 1 cut(s) 1283
ApeKI GCWGC 5 cut(s) 233, 422, 567, 585, 908
ApoI RAATTY 1 cut(s) 309
ArsI GACNNNNNNTTYG 2 cut(s) 296, 328
AsiGI ACCGGT 1 cut(s) 161
AspS9I GGNCC 4 cut(s) 4, 11, 21, 1199
AsuC2I CCSGG 2 cut(s) 8, 9
AsuHPI GGTGA 2 cut(s) 690, 1116
AvaI CYCGRG 2 cut(s) 7, 179
AvaII GGWCC 4 cut(s) 4, 11, 21, 1199
BaeGI GKGCMC 1 cut(s) 1103
BaeI ACNNNNGTAYC 2 cut(s) 750, 783
BanI GGYRCC 2 cut(s) 215, 1098
Bbv12I GWGCWC 1 cut(s) 488
BbvI GCAGC 5 cut(s) 220, 434, 554, 572, 895
BccI CCATC 2 cut(s) 497, 710
BceAI ACGGC 3 cut(s) 281, 580, 799
BcgI CGANNNNNNTGC 2 cut(s) 135, 169
BciT130I CCWGG 3 cut(s) 19, 756, 927
BcnI CCSGG 2 cut(s) 8, 9
BcoDI GTCTC 2 cut(s) 955, 1024
BfaI CTAG 2 cut(s) 854, 1333
BfuAI ACCTGC 1 cut(s) 337
BglI GCCNNNNNGGC 1 cut(s) 1182
BisI GCNGC 6 cut(s) 234, 423, 568, 586, 909, 1286
BlsI GCNGC 6 cut(s) 235, 424, 569, 587, 910, 1287
BmcAI AGTACT 1 cut(s) 727
Bme1390I CCNGG 5 cut(s) 8, 9, 19, 756, 927
Bme18I GGWCC 4 cut(s) 4, 11, 21, 1199
BmeT110I CYCGRG 2 cut(s) 7, 179
BmgT120I GGNCC 4 cut(s) 4, 11, 21, 1199
BmiI GGNNCC 7 cut(s) 6, 12, 23, 217, 290, 819, 1100
BmrFI CCNGG 5 cut(s) 8, 9, 19, 756, 927
BmrI ACTGGG 1 cut(s) 528
BmsI GCATC 2 cut(s) 1042, 1130
BmuI ACTGGG 1 cut(s) 528
BplI GAGNNNNNCTC 2 cut(s) 327, 359
BpmI CTGGAG 1 cut(s) 354
Bpu10I CCTNAGC 1 cut(s) 293
BpuEI CTTGAG 1 cut(s) 329
BpuMI CCSGG 2 cut(s) 8, 9
BsaHI GRCGYC 1 cut(s) 1185
BsaI GGTCTC 1 cut(s) 1024
BsaJI CCNNGG 4 cut(s) 7, 17, 670, 1177
BsaWI WCCGGW 2 cut(s) 161, 974
BsaXI ACNNNNNCTCC 2 cut(s) 526, 556
Bsc4I CCNNNNNNNGG 4 cut(s) 335, 926, 974, 1109
Bse118I RCCGGY 1 cut(s) 161
Bse1I ACTGG 2 cut(s) 523, 1068
BseBI CCWGG 3 cut(s) 19, 756, 927
BseDI CCNNGG 4 cut(s) 7, 17, 670, 1177
BseGI GGATG 3 cut(s) 399, 702, 964
BseLI CCNNNNNNNGG 4 cut(s) 335, 926, 974, 1109
BseMII CTCAG 4 cut(s) 284, 720, 809, 1019
BseNI ACTGG 2 cut(s) 523, 1068
BseRI GAGGAG 3 cut(s) 534, 539, 993
BseSI GKGCMC 1 cut(s) 1103
BseX3I CGGCCG 1 cut(s) 1283
BseXI GCAGC 5 cut(s) 220, 434, 554, 572, 895
Bsh1285I CGRYCG 1 cut(s) 1286
BshFI GGCC 1 cut(s) 1285
BshNI GGYRCC 2 cut(s) 215, 1098
BshTI ACCGGT 1 cut(s) 161
BsiEI CGRYCG 1 cut(s) 1286
BsiHKAI GWGCWC 1 cut(s) 488
BsiHKCI CYCGRG 2 cut(s) 7, 179
BsiSI CCGG 4 cut(s) 8, 162, 302, 975
BsiWI CGTACG 1 cut(s) 45
BslFI GGGAC 3 cut(s) 7, 24, 959
BslI CCNNNNNNNGG 4 cut(s) 335, 926, 974, 1109
BsmAI GTCTC 2 cut(s) 955, 1024
BsmFI GGGAC 3 cut(s) 7, 24, 959
BsmI GAATGC 2 cut(s) 414, 950
BsnI GGCC 1 cut(s) 1285
Bso31I GGTCTC 1 cut(s) 1024
BsoBI CYCGRG 2 cut(s) 7, 179
Bsp1286I GDGCHC 2 cut(s) 488, 1103
Bsp1407I TGTACA 2 cut(s) 271, 504
Bsp143I GATC 5 cut(s) 32, 279, 636, 691, 1021
Bsp19I CCATGG 1 cut(s) 670
BspACI CCGC 1 cut(s) 1286
BspANI GGCC 1 cut(s) 1285
BspCNI CTCAG 4 cut(s) 285, 721, 808, 1020
BspLI GGNNCC 7 cut(s) 6, 12, 23, 217, 290, 819, 1100
BspMI ACCTGC 1 cut(s) 337
BspPI GGATC 3 cut(s) 40, 686, 1029
BspT107I GGYRCC 2 cut(s) 215, 1098
BspTNI GGTCTC 1 cut(s) 1024
BsrFI RCCGGY 1 cut(s) 161
BsrGI TGTACA 2 cut(s) 271, 504
BsrI ACTGG 2 cut(s) 523, 1068
BssAI RCCGGY 1 cut(s) 161
BssECI CCNNGG 4 cut(s) 7, 17, 670, 1177
BssMI GATC 5 cut(s) 32, 279, 636, 691, 1021
BssNI GRCGYC 1 cut(s) 1185
BssT1I CCWWGG 2 cut(s) 670, 1177
Bst2UI CCWGG 3 cut(s) 19, 756, 927
Bst4CI ACNGT 4 cut(s) 460, 650, 862, 991
BstACI GRCGYC 1 cut(s) 1185
BstAUI TGTACA 2 cut(s) 271, 504
BstC8I GCNNGC 3 cut(s) 299, 902, 906
BstDEI CTNAG 4 cut(s) 293, 729, 795, 1028
BstDSI CCRYGG 1 cut(s) 670
BstENI CCTNNNNNAGG 2 cut(s) 333, 1107
BstF5I GGATG 3 cut(s) 399, 702, 964
BstKTI GATC 5 cut(s) 35, 282, 639, 694, 1024
BstMAI GTCTC 2 cut(s) 955, 1024
BstMBI GATC 5 cut(s) 32, 279, 636, 691, 1021
BstMCI CGRYCG 1 cut(s) 1286
BstMWI GCNNNNNNNGC 6 cut(s) 224, 233, 239, 567, 854, 1182
BstNI CCWGG 3 cut(s) 19, 756, 927
BstNSI RCATGY 4 cut(s) 278, 680, 904, 1161
BstSCI CCNGG 5 cut(s) 6, 7, 17, 754, 925
BstSLI GKGCMC 1 cut(s) 1103
BstV1I GCAGC 5 cut(s) 220, 434, 554, 572, 895
BstX2I RGATCY 3 cut(s) 32, 691, 1021
BstYI RGATCY 3 cut(s) 32, 691, 1021
BstZI CGGCCG 1 cut(s) 1283
BsuRI GGCC 1 cut(s) 1285
BtgI CCRYGG 1 cut(s) 670
BtsCI GGATG 3 cut(s) 399, 702, 964
BtsIMutI CAGTG 1 cut(s) 1075
BveI ACCTGC 1 cut(s) 337
Cac8I GCNNGC 3 cut(s) 299, 902, 906
Cfr10I RCCGGY 1 cut(s) 161
Cfr13I GGNCC 4 cut(s) 4, 11, 21, 1199
Cfr9I CCCGGG 1 cut(s) 7
CseI GACGC 2 cut(s) 956, 1174
Csp6I GTAC 6 cut(s) 46, 195, 272, 505, 726, 767
CspAI ACCGGT 1 cut(s) 161
CviAII CATG 9 cut(s) 275, 621, 662, 671, 677, 901, 958, 1158, 1240
CviQI GTAC 6 cut(s) 46, 195, 272, 505, 726, 767
DdeI CTNAG 4 cut(s) 293, 729, 795, 1028
DpnI GATC 5 cut(s) 34, 281, 638, 693, 1023
DpnII GATC 5 cut(s) 32, 279, 636, 691, 1021
DraI TTTAAA 1 cut(s) 843
EaeI YGGCCR 1 cut(s) 1283
EagI CGGCCG 1 cut(s) 1283
EclXI CGGCCG 1 cut(s) 1283
Eco130I CCWWGG 2 cut(s) 670, 1177
Eco31I GGTCTC 1 cut(s) 1024
Eco47I GGWCC 4 cut(s) 4, 11, 21, 1199
Eco52I CGGCCG 1 cut(s) 1283
Eco57I CTGAAG 1 cut(s) 756
Eco88I CYCGRG 2 cut(s) 7, 179
EcoNI CCTNNNNNAGG 2 cut(s) 333, 1107
EcoRII CCWGG 3 cut(s) 17, 754, 925
EcoT14I CCWWGG 2 cut(s) 670, 1177
ErhI CCWWGG 2 cut(s) 670, 1177
FaeI CATG 9 cut(s) 278, 624, 665, 674, 680, 904, 961, 1161, 1243
FaqI GGGAC 3 cut(s) 7, 24, 959
FatI CATG 9 cut(s) 274, 620, 661, 670, 676, 900, 957, 1157, 1239
FauNDI CATATG 1 cut(s) 538
Fnu4HI GCNGC 6 cut(s) 234, 423, 568, 586, 909, 1286
FokI GGATG 3 cut(s) 386, 689, 951
Fsp4HI GCNGC 6 cut(s) 234, 423, 568, 586, 909, 1286
FspBI CTAG 2 cut(s) 854, 1333
GluI GCNGC 6 cut(s) 234, 423, 568, 586, 909, 1286
GsuI CTGGAG 1 cut(s) 354
HaeIII GGCC 1 cut(s) 1285
HapII CCGG 4 cut(s) 8, 162, 302, 975
HgaI GACGC 2 cut(s) 956, 1174
Hin1I GRCGYC 1 cut(s) 1185
Hin1II CATG 9 cut(s) 278, 624, 665, 674, 680, 904, 961, 1161, 1243
HincII GTYRAC 1 cut(s) 836
HindII GTYRAC 1 cut(s) 836
HindIII AAGCTT 2 cut(s) 379, 1316
HinfI GANTC 3 cut(s) 873, 1279, 1295
HpaII CCGG 4 cut(s) 8, 162, 302, 975
HphI GGTGA 2 cut(s) 690, 1116
Hpy166II GTNNAC 2 cut(s) 272, 836
Hpy188I TCNGA 4 cut(s) 374, 881, 1003, 1029
Hpy188III TCNNGA 1 cut(s) 346
Hpy8I GTNNAC 2 cut(s) 272, 836
Hpy99I CGWCG 3 cut(s) 374, 566, 632
HpyAV CCTTC 4 cut(s) 127, 254, 705, 780
HpyCH4III ACNGT 4 cut(s) 460, 650, 862, 991
HpyCH4IV ACGT 1 cut(s) 201
HpyCH4V TGCA 6 cut(s) 325, 665, 889, 932, 1055, 1136
HpyF10VI GCNNNNNNNGC 6 cut(s) 224, 233, 239, 567, 854, 1182
HpyF3I CTNAG 4 cut(s) 293, 729, 795, 1028
HpySE526I ACGT 1 cut(s) 201
Hsp92I GRCGYC 1 cut(s) 1185
Hsp92II CATG 9 cut(s) 278, 624, 665, 674, 680, 904, 961, 1161, 1243
Kzo9I GATC 5 cut(s) 32, 279, 636, 691, 1021
LmnI GCTCC 3 cut(s) 547, 823, 916
Lsp1109I GCAGC 5 cut(s) 220, 434, 554, 572, 895
LweI GCATC 2 cut(s) 1042, 1130
MaeI CTAG 2 cut(s) 854, 1333
MaeII ACGT 1 cut(s) 201
MaeIII GTNAC 1 cut(s) 460
MalI GATC 5 cut(s) 34, 281, 638, 693, 1023
MboI GATC 5 cut(s) 32, 279, 636, 691, 1021
MboII GAAGA 7 cut(s) 88, 142, 387, 488, 572, 1004, 1016
MflI RGATCY 3 cut(s) 32, 691, 1021
MhlI GDGCHC 2 cut(s) 488, 1103
MluCI AATT 5 cut(s) 309, 357, 443, 933, 1254
MlyI GAGTC 1 cut(s) 1288
MmeI TCCRAC 1 cut(s) 352
MseI TTAA 5 cut(s) 27, 842, 971, 1224, 1290
MslI CAYNNNNRTG 1 cut(s) 675
MspI CCGG 4 cut(s) 8, 162, 302, 975
MspR9I CCNGG 5 cut(s) 8, 9, 19, 756, 927
Mva1269I GAATGC 2 cut(s) 414, 950
MvaI CCWGG 3 cut(s) 19, 756, 927
MwoI GCNNNNNNNGC 6 cut(s) 224, 233, 239, 567, 854, 1182
NciI CCSGG 2 cut(s) 8, 9
NcoI CCATGG 1 cut(s) 670
NdeI CATATG 1 cut(s) 538
NdeII GATC 5 cut(s) 32, 279, 636, 691, 1021
NlaIII CATG 9 cut(s) 278, 624, 665, 674, 680, 904, 961, 1161, 1243
NlaIV GGNNCC 7 cut(s) 6, 12, 23, 217, 290, 819, 1100
NmuCI GTSAC 1 cut(s) 460
NspI RCATGY 4 cut(s) 278, 680, 904, 1161
PaeI GCATGC 1 cut(s) 904
PciI ACATGT 2 cut(s) 274, 676
PctI GAATGC 2 cut(s) 414, 950
PfeI GAWTC 2 cut(s) 873, 1295
Pfl23II CGTACG 1 cut(s) 45
PflFI GACNNNGTC 1 cut(s) 203
PinAI ACCGGT 1 cut(s) 161
PkrI GCNGC 6 cut(s) 235, 424, 569, 587, 910, 1287
PleI GAGTC 1 cut(s) 1287
PpsI GAGTC 1 cut(s) 1287
PscI ACATGT 2 cut(s) 274, 676
Psp6I CCWGG 3 cut(s) 17, 754, 925
PspGI CCWGG 3 cut(s) 17, 754, 925
PspLI CGTACG 1 cut(s) 45
PspN4I GGNNCC 7 cut(s) 6, 12, 23, 217, 290, 819, 1100
PspPI GGNCC 4 cut(s) 4, 11, 21, 1199
PsuI RGATCY 3 cut(s) 32, 691, 1021
PsyI GACNNNGTC 1 cut(s) 203
RsaI GTAC 6 cut(s) 47, 196, 273, 506, 727, 768
RsaNI GTAC 6 cut(s) 46, 195, 272, 505, 726, 767
RseI CAYNNNNRTG 1 cut(s) 675
SaqAI TTAA 5 cut(s) 27, 842, 971, 1224, 1290
SatI GCNGC 6 cut(s) 234, 423, 568, 586, 909, 1286
Sau3AI GATC 5 cut(s) 32, 279, 636, 691, 1021
Sau96I GGNCC 4 cut(s) 4, 11, 21, 1199
ScaI AGTACT 1 cut(s) 727
SchI GAGTC 1 cut(s) 1288
ScrFI CCNGG 5 cut(s) 8, 9, 19, 756, 927
SduI GDGCHC 2 cut(s) 488, 1103
SfaNI GCATC 2 cut(s) 1042, 1130
SinI GGWCC 4 cut(s) 4, 11, 21, 1199
SmaI CCCGGG 1 cut(s) 9
SmiMI CAYNNNNRTG 1 cut(s) 675
SmlI CTYRAG 1 cut(s) 344
SmoI CTYRAG 1 cut(s) 344
SphI GCATGC 1 cut(s) 904
Sse9I AATT 5 cut(s) 309, 357, 443, 933, 1254
SsiI CCGC 1 cut(s) 1286
SspI AATATT 1 cut(s) 607
SspMI CTAG 2 cut(s) 854, 1333
StyD4I CCNGG 5 cut(s) 6, 7, 17, 754, 925
StyI CCWWGG 2 cut(s) 670, 1177
TaaI ACNGT 4 cut(s) 460, 650, 862, 991
TaiI ACGT 1 cut(s) 204
TaqI TCGA 2 cut(s) 138, 282
TasI AATT 5 cut(s) 309, 357, 443, 933, 1254
TatI WGTACW 3 cut(s) 271, 504, 725
TauI GCSGC 1 cut(s) 1288
TfiI GAWTC 2 cut(s) 873, 1295
Tru1I TTAA 5 cut(s) 27, 842, 971, 1224, 1290
Tru9I TTAA 5 cut(s) 27, 842, 971, 1224, 1290
TscAI CASTG 1 cut(s) 1075
TseFI GTSAC 1 cut(s) 460
TseI GCWGC 5 cut(s) 233, 422, 567, 585, 908
Tsp45I GTSAC 1 cut(s) 460
TspDTI ATGAA 1 cut(s) 388
TspGWI ACGGA 1 cut(s) 212
TspMI CCCGGG 1 cut(s) 7
TspRI CASTG 1 cut(s) 1075
Tth111I GACNNNGTC 1 cut(s) 203
VpaK11BI GGWCC 4 cut(s) 4, 11, 21, 1199
XagI CCTNNNNNAGG 2 cut(s) 333, 1107
XapI RAATTY 1 cut(s) 309
XceI RCATGY 4 cut(s) 278, 680, 904, 1161
XcmI CCANNNNNNNNNTGG 1 cut(s) 1318
XmaI CCCGGG 1 cut(s) 7
XspI CTAG 2 cut(s) 854, 1333
ZrmI AGTACT 1 cut(s) 727
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.