squalene
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| IBH1_N | PF26576 | 26 - 93 | 1.1e-23 | IBH1-like, N-terminal domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 366 |
| AarI | CACCTGC | 1 cut(s) | 577 |
| Acc36I | ACCTGC | 1 cut(s) | 577 |
| Acc65I | GGTACC | 1 cut(s) | 186 |
| AccB1I | GGYRCC | 1 cut(s) | 186 |
| AccB7I | CCANNNNNTGG | 1 cut(s) | 63 |
| AccII | CGCG | 1 cut(s) | 249 |
| AciI | CCGC | 1 cut(s) | 413 |
| AclWI | GGATC | 1 cut(s) | 623 |
| AcuI | CTGAAG | 1 cut(s) | 140 |
| AfaI | GTAC | 3 cut(s) | 188, 380, 403 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 63, 586 |
| AflIII | ACRYGT | 1 cut(s) | 37 |
| AgsI | TTSAA | 1 cut(s) | 256 |
| AjnI | CCWGG | 2 cut(s) | 239, 514 |
| AluBI | AGCT | 6 cut(s) | 116, 265, 294, 351, 437, 583 |
| AluI | AGCT | 6 cut(s) | 116, 265, 294, 351, 437, 583 |
| Alw26I | GTCTC | 3 cut(s) | 284, 403, 581 |
| AlwI | GGATC | 1 cut(s) | 623 |
| ApeKI | GCWGC | 3 cut(s) | 226, 351, 583 |
| Asp718I | GGTACC | 1 cut(s) | 186 |
| AspLEI | GCGC | 2 cut(s) | 249, 251 |
| AsuHPI | GGTGA | 3 cut(s) | 16, 418, 601 |
| AsuII | TTCGAA | 1 cut(s) | 320 |
| BanI | GGYRCC | 1 cut(s) | 186 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 362, 394 |
| BauI | CACGAG | 2 cut(s) | 230, 312 |
| BbvI | GCAGC | 3 cut(s) | 238, 338, 570 |
| BccI | CCATC | 2 cut(s) | 57, 523 |
| BciT130I | CCWGG | 2 cut(s) | 241, 516 |
| BcoDI | GTCTC | 3 cut(s) | 284, 403, 581 |
| BfaI | CTAG | 4 cut(s) | 348, 399, 480, 608 |
| BfmI | CTRYAG | 2 cut(s) | 352, 584 |
| BfuAI | ACCTGC | 1 cut(s) | 577 |
| BisI | GCNGC | 3 cut(s) | 227, 352, 584 |
| BlsI | GCNGC | 3 cut(s) | 228, 353, 585 |
| BmcAI | AGTACT | 1 cut(s) | 380 |
| Bme1390I | CCNGG | 2 cut(s) | 241, 516 |
| BmiI | GGNNCC | 1 cut(s) | 188 |
| BmrFI | CCNGG | 2 cut(s) | 241, 516 |
| BmsI | GCATC | 2 cut(s) | 227, 234 |
| BpmI | CTGGAG | 1 cut(s) | 563 |
| Bpu14I | TTCGAA | 1 cut(s) | 320 |
| BsaI | GGTCTC | 1 cut(s) | 403 |
| BsaXI | ACNNNNNCTCC | 4 cut(s) | 249, 279, 371, 401 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 63, 586 |
| Bse3DI | GCAATG | 1 cut(s) | 210 |
| BseBI | CCWGG | 2 cut(s) | 241, 516 |
| BseGI | GGATG | 3 cut(s) | 28, 249, 307 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 63, 586 |
| BseMI | GCAATG | 1 cut(s) | 210 |
| BsePI | GCGCGC | 1 cut(s) | 247 |
| BseRI | GAGGAG | 2 cut(s) | 155, 376 |
| BseXI | GCAGC | 3 cut(s) | 238, 338, 570 |
| Bsh1236I | CGCG | 1 cut(s) | 249 |
| BshNI | GGYRCC | 1 cut(s) | 186 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 63, 586 |
| BsmAI | GTCTC | 3 cut(s) | 284, 403, 581 |
| Bso31I | GGTCTC | 1 cut(s) | 403 |
| Bsp119I | TTCGAA | 1 cut(s) | 320 |
| Bsp143I | GATC | 1 cut(s) | 615 |
| BspACI | CCGC | 1 cut(s) | 413 |
| BspFNI | CGCG | 1 cut(s) | 249 |
| BspHI | TCATGA | 1 cut(s) | 163 |
| BspLI | GGNNCC | 1 cut(s) | 188 |
| BspMAI | CTGCAG | 2 cut(s) | 356, 588 |
| BspMI | ACCTGC | 1 cut(s) | 577 |
| BspPI | GGATC | 1 cut(s) | 623 |
| BspT104I | TTCGAA | 1 cut(s) | 320 |
| BspT107I | GGYRCC | 1 cut(s) | 186 |
| BspTNI | GGTCTC | 1 cut(s) | 403 |
| BsrDI | GCAATG | 1 cut(s) | 210 |
| BssHII | GCGCGC | 1 cut(s) | 247 |
| BssMI | GATC | 1 cut(s) | 615 |
| BssSI | CACGAG | 2 cut(s) | 230, 312 |
| Bst2BI | CACGAG | 2 cut(s) | 230, 312 |
| Bst2UI | CCWGG | 2 cut(s) | 241, 516 |
| Bst4CI | ACNGT | 1 cut(s) | 406 |
| Bst6I | CTCTTC | 1 cut(s) | 459 |
| BstBI | TTCGAA | 1 cut(s) | 320 |
| BstC8I | GCNNGC | 2 cut(s) | 114, 249 |
| BstDEI | CTNAG | 1 cut(s) | 500 |
| BstF5I | GGATG | 3 cut(s) | 28, 249, 307 |
| BstFNI | CGCG | 1 cut(s) | 249 |
| BstHHI | GCGC | 2 cut(s) | 249, 251 |
| BstKTI | GATC | 1 cut(s) | 618 |
| BstMAI | GTCTC | 3 cut(s) | 284, 403, 581 |
| BstMBI | GATC | 1 cut(s) | 615 |
| BstNI | CCWGG | 2 cut(s) | 241, 516 |
| BstSCI | CCNGG | 2 cut(s) | 239, 514 |
| BstSFI | CTRYAG | 2 cut(s) | 352, 584 |
| BstUI | CGCG | 1 cut(s) | 249 |
| BstV1I | GCAGC | 3 cut(s) | 238, 338, 570 |
| BtsCI | GGATG | 3 cut(s) | 28, 249, 307 |
| BtsI | GCAGTG | 1 cut(s) | 361 |
| BtsIMutI | CAGTG | 1 cut(s) | 361 |
| BveI | ACCTGC | 1 cut(s) | 577 |
| Cac8I | GCNNGC | 2 cut(s) | 114, 249 |
| CciI | TCATGA | 1 cut(s) | 163 |
| CfoI | GCGC | 2 cut(s) | 249, 251 |
| Csp6I | GTAC | 3 cut(s) | 187, 379, 402 |
| CviAII | CATG | 2 cut(s) | 164, 199 |
| CviJI | RGCY | 8 cut(s) | 116, 265, 294, 325, 351, 437, 508, 583 |
| CviKI_1 | RGCY | 8 cut(s) | 116, 265, 294, 325, 351, 437, 508, 583 |
| CviQI | GTAC | 3 cut(s) | 187, 379, 402 |
| DdeI | CTNAG | 1 cut(s) | 500 |
| DpnI | GATC | 1 cut(s) | 617 |
| DpnII | GATC | 1 cut(s) | 615 |
| Eam1104I | CTCTTC | 1 cut(s) | 459 |
| EarI | CTCTTC | 1 cut(s) | 459 |
| Eco31I | GGTCTC | 1 cut(s) | 403 |
| Eco57I | CTGAAG | 1 cut(s) | 140 |
| EcoRII | CCWGG | 2 cut(s) | 239, 514 |
| FaeI | CATG | 2 cut(s) | 167, 202 |
| FaiI | YATR | 6 cut(s) | 96, 165, 200, 366, 395, 567 |
| FatI | CATG | 2 cut(s) | 163, 198 |
| Fnu4HI | GCNGC | 3 cut(s) | 227, 352, 584 |
| FokI | GGATG | 3 cut(s) | 15, 256, 294 |
| Fsp4HI | GCNGC | 3 cut(s) | 227, 352, 584 |
| FspBI | CTAG | 4 cut(s) | 348, 399, 480, 608 |
| GlaI | GCGC | 2 cut(s) | 248, 250 |
| GluI | GCNGC | 3 cut(s) | 227, 352, 584 |
| GsuI | CTGGAG | 1 cut(s) | 563 |
| HhaI | GCGC | 2 cut(s) | 249, 251 |
| Hin1II | CATG | 2 cut(s) | 167, 202 |
| Hin6I | GCGC | 2 cut(s) | 247, 249 |
| HinP1I | GCGC | 2 cut(s) | 247, 249 |
| HincII | GTYRAC | 1 cut(s) | 535 |
| HindII | GTYRAC | 1 cut(s) | 535 |
| HphI | GGTGA | 3 cut(s) | 16, 418, 601 |
| Hpy166II | GTNNAC | 4 cut(s) | 26, 43, 196, 535 |
| Hpy188I | TCNGA | 4 cut(s) | 33, 120, 157, 422 |
| Hpy188III | TCNNGA | 1 cut(s) | 164 |
| Hpy8I | GTNNAC | 4 cut(s) | 26, 43, 196, 535 |
| HpyAV | CCTTC | 1 cut(s) | 498 |
| HpyCH4III | ACNGT | 1 cut(s) | 406 |
| HpyCH4IV | ACGT | 1 cut(s) | 37 |
| HpyCH4V | TGCA | 8 cut(s) | 52, 86, 218, 340, 354, 359, 452, 586 |
| HpyF3I | CTNAG | 1 cut(s) | 500 |
| HpySE526I | ACGT | 1 cut(s) | 37 |
| Hsp92II | CATG | 2 cut(s) | 167, 202 |
| HspAI | GCGC | 2 cut(s) | 247, 249 |
| KpnI | GGTACC | 1 cut(s) | 190 |
| Kzo9I | GATC | 1 cut(s) | 615 |
| LmnI | GCTCC | 2 cut(s) | 270, 389 |
| LpnPI | CCDG | 9 cut(s) | 126, 226, 253, 469, 501, 528, 533, 572, 593 |
| Lsp1109I | GCAGC | 3 cut(s) | 238, 338, 570 |
| LweI | GCATC | 2 cut(s) | 227, 234 |
| MaeI | CTAG | 4 cut(s) | 348, 399, 480, 608 |
| MaeII | ACGT | 1 cut(s) | 37 |
| MaeIII | GTNAC | 3 cut(s) | 149, 568, 589 |
| MalI | GATC | 1 cut(s) | 617 |
| MboI | GATC | 1 cut(s) | 615 |
| MboII | GAAGA | 9 cut(s) | 66, 102, 133, 136, 382, 385, 476, 563, 590 |
| MluCI | AATT | 5 cut(s) | 100, 177, 274, 542, 628 |
| MmeI | TCCRAC | 1 cut(s) | 150 |
| MnlI | CCTC | 7 cut(s) | 6, 133, 315, 321, 397, 460, 512 |
| MseI | TTAA | 1 cut(s) | 627 |
| MslI | CAYNNNNRTG | 2 cut(s) | 203, 312 |
| MspA1I | CMGCKG | 1 cut(s) | 583 |
| MspR9I | CCNGG | 2 cut(s) | 241, 516 |
| MvaI | CCWGG | 2 cut(s) | 241, 516 |
| MvnI | CGCG | 1 cut(s) | 249 |
| NdeII | GATC | 1 cut(s) | 615 |
| NlaIII | CATG | 2 cut(s) | 167, 202 |
| NlaIV | GGNNCC | 1 cut(s) | 188 |
| NmuCI | GTSAC | 1 cut(s) | 589 |
| NspV | TTCGAA | 1 cut(s) | 320 |
| PagI | TCATGA | 1 cut(s) | 163 |
| PaqCI | CACCTGC | 1 cut(s) | 577 |
| PauI | GCGCGC | 1 cut(s) | 247 |
| PflMI | CCANNNNNTGG | 1 cut(s) | 63 |
| PkrI | GCNGC | 3 cut(s) | 228, 353, 585 |
| PsiI | TTATAA | 1 cut(s) | 366 |
| Psp6I | CCWGG | 2 cut(s) | 239, 514 |
| PspGI | CCWGG | 2 cut(s) | 239, 514 |
| PspN4I | GGNNCC | 1 cut(s) | 188 |
| PstI | CTGCAG | 2 cut(s) | 356, 588 |
| PteI | GCGCGC | 1 cut(s) | 247 |
| PvuII | CAGCTG | 1 cut(s) | 583 |
| RsaI | GTAC | 3 cut(s) | 188, 380, 403 |
| RsaNI | GTAC | 3 cut(s) | 187, 379, 402 |
| RseI | CAYNNNNRTG | 2 cut(s) | 203, 312 |
| SaqAI | TTAA | 1 cut(s) | 627 |
| SatI | GCNGC | 3 cut(s) | 227, 352, 584 |
| Sau3AI | GATC | 1 cut(s) | 615 |
| ScaI | AGTACT | 1 cut(s) | 380 |
| ScrFI | CCNGG | 2 cut(s) | 241, 516 |
| SetI | ASST | 9 cut(s) | 40, 118, 267, 296, 307, 353, 439, 585, 591 |
| SfaNI | GCATC | 2 cut(s) | 227, 234 |
| SfcI | CTRYAG | 2 cut(s) | 352, 584 |
| SfuI | TTCGAA | 1 cut(s) | 320 |
| SmiMI | CAYNNNNRTG | 2 cut(s) | 203, 312 |
| Sse9I | AATT | 5 cut(s) | 100, 177, 274, 542, 628 |
| SsiI | CCGC | 1 cut(s) | 413 |
| SspMI | CTAG | 4 cut(s) | 348, 399, 480, 608 |
| StyD4I | CCNGG | 2 cut(s) | 239, 514 |
| TaaI | ACNGT | 1 cut(s) | 406 |
| TaiI | ACGT | 1 cut(s) | 40 |
| TaqI | TCGA | 2 cut(s) | 320, 618 |
| TasI | AATT | 5 cut(s) | 100, 177, 274, 542, 628 |
| TatI | WGTACW | 1 cut(s) | 378 |
| Tru1I | TTAA | 1 cut(s) | 627 |
| Tru9I | TTAA | 1 cut(s) | 627 |
| TscAI | CASTG | 1 cut(s) | 361 |
| TseFI | GTSAC | 1 cut(s) | 589 |
| TseI | GCWGC | 3 cut(s) | 226, 351, 583 |
| Tsp45I | GTSAC | 1 cut(s) | 589 |
| TspDTI | ATGAA | 2 cut(s) | 152, 555 |
| TspRI | CASTG | 1 cut(s) | 361 |
| Van91I | CCANNNNNTGG | 1 cut(s) | 63 |
| XspI | CTAG | 4 cut(s) | 348, 399, 480, 608 |
| ZrmI | AGTACT | 1 cut(s) | 380 |