squalene
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| Thi4 | PF01946 | 6 - 40 | 3.4e-06 | Thi4 family |
| FAD_binding_3 | PF01494 | 7 - 51 | 8.7e-07 | FAD binding domain |
| DAO | PF01266 | 8 - 38 | 3.1e-09 | FAD dependent oxidoreductase |
| FAD_binding_2 | PF00890 | 8 - 37 | 1e-06 | FAD binding domain |
| NAD_binding_8 | PF13450 | 11 - 37 | 2.7e-07 | NAD(P)-binding Rossmann-like domain |
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccB1I | GGYRCC | 1 cut(s) | 38 |
| AcoI | YGGCCR | 1 cut(s) | 302 |
| AfaI | GTAC | 2 cut(s) | 19, 330 |
| AgsI | TTSAA | 3 cut(s) | 107, 341, 372 |
| AjnI | CCWGG | 1 cut(s) | 154 |
| AluBI | AGCT | 3 cut(s) | 59, 145, 359 |
| AluI | AGCT | 3 cut(s) | 59, 145, 359 |
| Alw26I | GTCTC | 1 cut(s) | 105 |
| AoxI | GGCC | 1 cut(s) | 302 |
| ApeKI | GCWGC | 3 cut(s) | 56, 151, 359 |
| AsuC2I | CCSGG | 1 cut(s) | 306 |
| BanI | GGYRCC | 1 cut(s) | 38 |
| BbvI | GCAGC | 3 cut(s) | 68, 163, 346 |
| BceAI | ACGGC | 1 cut(s) | 104 |
| BciT130I | CCWGG | 1 cut(s) | 156 |
| BciVI | GTATCC | 1 cut(s) | 252 |
| BcnI | CCSGG | 1 cut(s) | 306 |
| BcoDI | GTCTC | 1 cut(s) | 105 |
| BfuI | GTATCC | 1 cut(s) | 252 |
| BisI | GCNGC | 3 cut(s) | 57, 152, 360 |
| BlsI | GCNGC | 3 cut(s) | 58, 153, 361 |
| Bme1390I | CCNGG | 2 cut(s) | 156, 306 |
| BmiI | GGNNCC | 1 cut(s) | 40 |
| BmrFI | CCNGG | 2 cut(s) | 156, 306 |
| BmsI | GCATC | 1 cut(s) | 205 |
| BpuEI | CTTGAG | 1 cut(s) | 136 |
| BpuMI | CCSGG | 1 cut(s) | 306 |
| BsaJI | CCNNGG | 3 cut(s) | 78, 155, 278 |
| BseBI | CCWGG | 1 cut(s) | 156 |
| BseDI | CCNNGG | 3 cut(s) | 78, 155, 278 |
| BseRI | GAGGAG | 3 cut(s) | 20, 23, 324 |
| BseXI | GCAGC | 3 cut(s) | 68, 163, 346 |
| BsgI | GTGCAG | 1 cut(s) | 75 |
| BshFI | GGCC | 1 cut(s) | 304 |
| BshNI | GGYRCC | 1 cut(s) | 38 |
| BsiSI | CCGG | 2 cut(s) | 42, 305 |
| BsiWI | CGTACG | 1 cut(s) | 328 |
| BsmAI | GTCTC | 1 cut(s) | 105 |
| BsmI | GAATGC | 1 cut(s) | 351 |
| BsnI | GGCC | 1 cut(s) | 304 |
| BspANI | GGCC | 1 cut(s) | 304 |
| BspLI | GGNNCC | 1 cut(s) | 40 |
| BspT107I | GGYRCC | 1 cut(s) | 38 |
| BssECI | CCNNGG | 3 cut(s) | 78, 155, 278 |
| BssT1I | CCWWGG | 2 cut(s) | 78, 278 |
| Bst2UI | CCWGG | 1 cut(s) | 156 |
| Bst4CI | ACNGT | 2 cut(s) | 269, 292 |
| BstAPI | GCANNNNNTGC | 1 cut(s) | 62 |
| BstMAI | GTCTC | 1 cut(s) | 105 |
| BstMWI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 151 |
| BstNI | CCWGG | 1 cut(s) | 156 |
| BstNSI | RCATGY | 1 cut(s) | 101 |
| BstSCI | CCNGG | 2 cut(s) | 154, 304 |
| BstV1I | GCAGC | 3 cut(s) | 68, 163, 346 |
| BsuI | GTATCC | 1 cut(s) | 252 |
| BsuRI | GGCC | 1 cut(s) | 304 |
| BtsIMutI | CAGTG | 1 cut(s) | 265 |
| Csp6I | GTAC | 2 cut(s) | 18, 329 |
| CviAII | CATG | 1 cut(s) | 98 |
| CviJI | RGCY | 6 cut(s) | 59, 124, 145, 154, 304, 359 |
| CviKI_1 | RGCY | 6 cut(s) | 59, 124, 145, 154, 304, 359 |
| CviQI | GTAC | 2 cut(s) | 18, 329 |
| EaeI | YGGCCR | 1 cut(s) | 302 |
| Eco130I | CCWWGG | 2 cut(s) | 78, 278 |
| Eco32I | GATATC | 1 cut(s) | 164 |
| EcoRII | CCWGG | 1 cut(s) | 154 |
| EcoRV | GATATC | 1 cut(s) | 164 |
| EcoT14I | CCWWGG | 2 cut(s) | 78, 278 |
| ErhI | CCWWGG | 2 cut(s) | 78, 278 |
| FaeI | CATG | 1 cut(s) | 101 |
| FaiI | YATR | 2 cut(s) | 99, 237 |
| FatI | CATG | 1 cut(s) | 97 |
| Fnu4HI | GCNGC | 3 cut(s) | 57, 152, 360 |
| Fsp4HI | GCNGC | 3 cut(s) | 57, 152, 360 |
| GluI | GCNGC | 3 cut(s) | 57, 152, 360 |
| HaeIII | GGCC | 1 cut(s) | 304 |
| HapII | CCGG | 2 cut(s) | 42, 305 |
| Hin1II | CATG | 1 cut(s) | 101 |
| HinfI | GANTC | 1 cut(s) | 206 |
| HpaII | CCGG | 2 cut(s) | 42, 305 |
| Hpy188I | TCNGA | 1 cut(s) | 297 |
| Hpy188III | TCNNGA | 1 cut(s) | 188 |
| HpyAV | CCTTC | 2 cut(s) | 77, 249 |
| HpyCH4III | ACNGT | 2 cut(s) | 269, 292 |
| HpyCH4IV | ACGT | 1 cut(s) | 331 |
| HpyCH4V | TGCA | 3 cut(s) | 56, 97, 151 |
| HpyF10VI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 151 |
| HpySE526I | ACGT | 1 cut(s) | 331 |
| Hsp92II | CATG | 1 cut(s) | 101 |
| LmnI | GCTCC | 1 cut(s) | 142 |
| LpnPI | CCDG | 7 cut(s) | 36, 55, 138, 141, 168, 233, 318 |
| Lsp1109I | GCAGC | 3 cut(s) | 68, 163, 346 |
| LweI | GCATC | 1 cut(s) | 205 |
| MaeII | ACGT | 1 cut(s) | 331 |
| MboII | GAAGA | 1 cut(s) | 203 |
| MluCI | AATT | 3 cut(s) | 102, 132, 170 |
| MlyI | GAGTC | 1 cut(s) | 215 |
| MnlI | CCTC | 2 cut(s) | 244, 302 |
| MspI | CCGG | 2 cut(s) | 42, 305 |
| MspR9I | CCNGG | 2 cut(s) | 156, 306 |
| Mva1269I | GAATGC | 1 cut(s) | 351 |
| MvaI | CCWGG | 1 cut(s) | 156 |
| MwoI | GCNNNNNNNGC | 4 cut(s) | 47, 56, 62, 151 |
| NciI | CCSGG | 1 cut(s) | 306 |
| NlaIII | CATG | 1 cut(s) | 101 |
| NlaIV | GGNNCC | 1 cut(s) | 40 |
| NspI | RCATGY | 1 cut(s) | 101 |
| PctI | GAATGC | 1 cut(s) | 351 |
| Pfl23II | CGTACG | 1 cut(s) | 328 |
| PkrI | GCNGC | 3 cut(s) | 58, 153, 361 |
| PleI | GAGTC | 1 cut(s) | 214 |
| PpsI | GAGTC | 1 cut(s) | 214 |
| Psp6I | CCWGG | 1 cut(s) | 154 |
| PspGI | CCWGG | 1 cut(s) | 154 |
| PspLI | CGTACG | 1 cut(s) | 328 |
| PspN4I | GGNNCC | 1 cut(s) | 40 |
| RsaI | GTAC | 2 cut(s) | 19, 330 |
| RsaNI | GTAC | 2 cut(s) | 18, 329 |
| SatI | GCNGC | 3 cut(s) | 57, 152, 360 |
| SchI | GAGTC | 1 cut(s) | 215 |
| ScrFI | CCNGG | 2 cut(s) | 156, 306 |
| SetI | ASST | 4 cut(s) | 61, 147, 334, 361 |
| SfaNI | GCATC | 1 cut(s) | 205 |
| SmlI | CTYRAG | 1 cut(s) | 115 |
| SmoI | CTYRAG | 1 cut(s) | 115 |
| Sse9I | AATT | 3 cut(s) | 102, 132, 170 |
| StyD4I | CCNGG | 2 cut(s) | 154, 304 |
| StyI | CCWWGG | 2 cut(s) | 78, 278 |
| TaaI | ACNGT | 2 cut(s) | 269, 292 |
| TaiI | ACGT | 1 cut(s) | 334 |
| TaqI | TCGA | 1 cut(s) | 209 |
| TasI | AATT | 3 cut(s) | 102, 132, 170 |
| TscAI | CASTG | 1 cut(s) | 272 |
| TseI | GCWGC | 3 cut(s) | 56, 151, 359 |
| TspDTI | ATGAA | 1 cut(s) | 325 |
| TspRI | CASTG | 1 cut(s) | 272 |
| XceI | RCATGY | 1 cut(s) | 101 |
| XcmI | CCANNNNNNNNNTGG | 1 cut(s) | 227 |