squalene
| Domain Name | Pfam ID | Position | E-value | Description |
|---|---|---|---|---|
| tRNA-synt_1c | PF00749 | 3 - 140 | 8.8e-39 | tRNA synthetases class I (E and Q), catalytic domain |
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| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AccI | GTMKAC | 1 cut(s) | 36 |
| AciI | CCGC | 1 cut(s) | 505 |
| AclWI | GGATC | 4 cut(s) | 96, 266, 413, 646 |
| AcsI | RAATTY | 1 cut(s) | 141 |
| AfaI | GTAC | 1 cut(s) | 134 |
| AjnI | CCWGG | 1 cut(s) | 668 |
| AluBI | AGCT | 2 cut(s) | 229, 664 |
| AluI | AGCT | 2 cut(s) | 229, 664 |
| Alw26I | GTCTC | 1 cut(s) | 317 |
| AlwI | GGATC | 4 cut(s) | 96, 266, 413, 646 |
| AoxI | GGCC | 1 cut(s) | 484 |
| ApoI | RAATTY | 1 cut(s) | 141 |
| AspA2I | CCTAGG | 1 cut(s) | 515 |
| AspLEI | GCGC | 2 cut(s) | 225, 613 |
| AspS9I | GGNCC | 2 cut(s) | 21, 485 |
| AvaII | GGWCC | 1 cut(s) | 21 |
| AvrII | CCTAGG | 1 cut(s) | 515 |
| BarI | GAAGNNNNNNTAC | 2 cut(s) | 315, 347 |
| BbsI | GAAGAC | 1 cut(s) | 540 |
| BbvCI | CCTCAGC | 1 cut(s) | 215 |
| BccI | CCATC | 2 cut(s) | 258, 547 |
| BceAI | ACGGC | 1 cut(s) | 428 |
| BcgI | CGANNNNNNTGC | 2 cut(s) | 590, 624 |
| BciT130I | CCWGG | 1 cut(s) | 670 |
| BcoDI | GTCTC | 1 cut(s) | 317 |
| BfaI | CTAG | 1 cut(s) | 516 |
| BlnI | CCTAGG | 1 cut(s) | 515 |
| BmcAI | AGTACT | 1 cut(s) | 134 |
| Bme1390I | CCNGG | 1 cut(s) | 670 |
| Bme18I | GGWCC | 1 cut(s) | 21 |
| BmgT120I | GGNCC | 2 cut(s) | 21, 485 |
| BmiI | GGNNCC | 1 cut(s) | 22 |
| BmrFI | CCNGG | 1 cut(s) | 670 |
| BmrI | ACTGGG | 1 cut(s) | 124 |
| BmsI | GCATC | 1 cut(s) | 637 |
| BmuI | ACTGGG | 1 cut(s) | 124 |
| BpiI | GAAGAC | 1 cut(s) | 540 |
| Bpu10I | CCTNAGC | 1 cut(s) | 215 |
| BpuEI | CTTGAG | 1 cut(s) | 365 |
| BsaI | GGTCTC | 1 cut(s) | 317 |
| BsaJI | CCNNGG | 1 cut(s) | 515 |
| Bse1I | ACTGG | 2 cut(s) | 105, 130 |
| BseBI | CCWGG | 1 cut(s) | 670 |
| BseDI | CCNNGG | 1 cut(s) | 515 |
| BseGI | GGATG | 2 cut(s) | 269, 274 |
| BseMII | CTCAG | 3 cut(s) | 152, 229, 480 |
| BseNI | ACTGG | 2 cut(s) | 105, 130 |
| BseRI | GAGGAG | 1 cut(s) | 203 |
| BshFI | GGCC | 1 cut(s) | 486 |
| BslFI | GGGAC | 3 cut(s) | 171, 398, 471 |
| BsmAI | GTCTC | 1 cut(s) | 317 |
| BsmFI | GGGAC | 3 cut(s) | 171, 398, 471 |
| BsmI | GAATGC | 1 cut(s) | 571 |
| BsnI | GGCC | 1 cut(s) | 486 |
| Bso31I | GGTCTC | 1 cut(s) | 317 |
| Bsp143I | GATC | 5 cut(s) | 101, 118, 271, 418, 638 |
| BspACI | CCGC | 1 cut(s) | 505 |
| BspANI | GGCC | 1 cut(s) | 486 |
| BspCNI | CTCAG | 3 cut(s) | 153, 228, 481 |
| BspHI | TCATGA | 1 cut(s) | 115 |
| BspLI | GGNNCC | 1 cut(s) | 22 |
| BspPI | GGATC | 4 cut(s) | 96, 266, 413, 646 |
| BspTNI | GGTCTC | 1 cut(s) | 317 |
| BsrI | ACTGG | 2 cut(s) | 105, 130 |
| BssECI | CCNNGG | 1 cut(s) | 515 |
| BssMI | GATC | 5 cut(s) | 101, 118, 271, 418, 638 |
| BssT1I | CCWWGG | 1 cut(s) | 515 |
| Bst2UI | CCWGG | 1 cut(s) | 670 |
| Bst4CI | ACNGT | 3 cut(s) | 289, 336, 393 |
| Bst6I | CTCTTC | 2 cut(s) | 160, 447 |
| BstC8I | GCNNGC | 2 cut(s) | 221, 227 |
| BstDEI | CTNAG | 3 cut(s) | 161, 215, 489 |
| BstF5I | GGATG | 2 cut(s) | 269, 274 |
| BstHHI | GCGC | 2 cut(s) | 225, 613 |
| BstKTI | GATC | 5 cut(s) | 104, 121, 274, 421, 641 |
| BstMAI | GTCTC | 1 cut(s) | 317 |
| BstMBI | GATC | 5 cut(s) | 101, 118, 271, 418, 638 |
| BstNI | CCWGG | 1 cut(s) | 670 |
| BstSCI | CCNGG | 1 cut(s) | 668 |
| BstV2I | GAAGAC | 1 cut(s) | 540 |
| BstX2I | RGATCY | 1 cut(s) | 638 |
| BstYI | RGATCY | 1 cut(s) | 638 |
| BsuRI | GGCC | 1 cut(s) | 486 |
| BtsCI | GGATG | 2 cut(s) | 269, 274 |
| BtsIMutI | CAGTG | 1 cut(s) | 112 |
| Cac8I | GCNNGC | 2 cut(s) | 221, 227 |
| CciI | TCATGA | 1 cut(s) | 115 |
| CfoI | GCGC | 2 cut(s) | 225, 613 |
| Cfr13I | GGNCC | 2 cut(s) | 21, 485 |
| CsiI | ACCWGGT | 1 cut(s) | 668 |
| Csp6I | GTAC | 1 cut(s) | 133 |
| CviAII | CATG | 3 cut(s) | 92, 116, 199 |
| CviJI | RGCY | 6 cut(s) | 56, 229, 356, 486, 496, 664 |
| CviKI_1 | RGCY | 6 cut(s) | 56, 229, 356, 486, 496, 664 |
| CviQI | GTAC | 1 cut(s) | 133 |
| DdeI | CTNAG | 3 cut(s) | 161, 215, 489 |
| DpnI | GATC | 5 cut(s) | 103, 120, 273, 420, 640 |
| DpnII | GATC | 5 cut(s) | 101, 118, 271, 418, 638 |
| Eam1104I | CTCTTC | 2 cut(s) | 160, 447 |
| EarI | CTCTTC | 2 cut(s) | 160, 447 |
| Eco130I | CCWWGG | 1 cut(s) | 515 |
| Eco31I | GGTCTC | 1 cut(s) | 317 |
| Eco47I | GGWCC | 1 cut(s) | 21 |
| EcoRI | GAATTC | 1 cut(s) | 141 |
| EcoRII | CCWGG | 1 cut(s) | 668 |
| EcoT14I | CCWWGG | 1 cut(s) | 515 |
| ErhI | CCWWGG | 1 cut(s) | 515 |
| FaeI | CATG | 3 cut(s) | 95, 119, 202 |
| FaqI | GGGAC | 3 cut(s) | 171, 398, 471 |
| FatI | CATG | 3 cut(s) | 91, 115, 198 |
| FauNDI | CATATG | 1 cut(s) | 174 |
| FblI | GTMKAC | 1 cut(s) | 36 |
| FokI | GGATG | 2 cut(s) | 276, 281 |
| FspBI | CTAG | 1 cut(s) | 516 |
| GlaI | GCGC | 2 cut(s) | 224, 612 |
| HaeIII | GGCC | 1 cut(s) | 486 |
| HhaI | GCGC | 2 cut(s) | 225, 613 |
| Hin1II | CATG | 3 cut(s) | 95, 119, 202 |
| Hin6I | GCGC | 2 cut(s) | 223, 611 |
| HinP1I | GCGC | 2 cut(s) | 223, 611 |
| HincII | GTYRAC | 2 cut(s) | 259, 471 |
| HindII | GTYRAC | 2 cut(s) | 259, 471 |
| HindIII | AAGCTT | 2 cut(s) | 227, 662 |
| HinfI | GANTC | 3 cut(s) | 71, 364, 370 |
| HpaI | GTTAAC | 1 cut(s) | 471 |
| Hpy166II | GTNNAC | 4 cut(s) | 37, 259, 396, 471 |
| Hpy188I | TCNGA | 2 cut(s) | 25, 369 |
| Hpy188III | TCNNGA | 4 cut(s) | 116, 146, 344, 632 |
| Hpy8I | GTNNAC | 4 cut(s) | 37, 259, 396, 471 |
| HpyAV | CCTTC | 3 cut(s) | 74, 247, 629 |
| HpyCH4III | ACNGT | 3 cut(s) | 289, 336, 393 |
| HpyCH4V | TGCA | 3 cut(s) | 95, 172, 628 |
| HpyF3I | CTNAG | 3 cut(s) | 161, 215, 489 |
| Hsp92II | CATG | 3 cut(s) | 95, 119, 202 |
| HspAI | GCGC | 2 cut(s) | 223, 611 |
| KspAI | GTTAAC | 1 cut(s) | 471 |
| Kzo9I | GATC | 5 cut(s) | 101, 118, 271, 418, 638 |
| LpnPI | CCDG | 8 cut(s) | 118, 143, 335, 435, 501, 603, 655, 682 |
| LweI | GCATC | 1 cut(s) | 637 |
| MabI | ACCWGGT | 1 cut(s) | 668 |
| MaeI | CTAG | 1 cut(s) | 516 |
| MaeIII | GTNAC | 1 cut(s) | 544 |
| MalI | GATC | 5 cut(s) | 103, 120, 273, 420, 640 |
| MboI | GATC | 5 cut(s) | 101, 118, 271, 418, 638 |
| MboII | GAAGA | 5 cut(s) | 177, 421, 464, 545, 592 |
| MflI | RGATCY | 1 cut(s) | 638 |
| MluCI | AATT | 4 cut(s) | 141, 297, 399, 656 |
| MmeI | TCCRAC | 1 cut(s) | 308 |
| MnlI | CCTC | 6 cut(s) | 224, 285, 302, 448, 485, 532 |
| MseI | TTAA | 4 cut(s) | 402, 470, 576, 688 |
| MslI | CAYNNNNRTG | 1 cut(s) | 177 |
| MspR9I | CCNGG | 1 cut(s) | 670 |
| Mva1269I | GAATGC | 1 cut(s) | 571 |
| MvaI | CCWGG | 1 cut(s) | 670 |
| NdeI | CATATG | 1 cut(s) | 174 |
| NdeII | GATC | 5 cut(s) | 101, 118, 271, 418, 638 |
| NlaIII | CATG | 3 cut(s) | 95, 119, 202 |
| NlaIV | GGNNCC | 1 cut(s) | 22 |
| NmuCI | GTSAC | 1 cut(s) | 544 |
| PagI | TCATGA | 1 cut(s) | 115 |
| PctI | GAATGC | 1 cut(s) | 571 |
| PfeI | GAWTC | 3 cut(s) | 71, 364, 370 |
| Psp6I | CCWGG | 1 cut(s) | 668 |
| PspGI | CCWGG | 1 cut(s) | 668 |
| PspN4I | GGNNCC | 1 cut(s) | 22 |
| PspPI | GGNCC | 2 cut(s) | 21, 485 |
| PsuI | RGATCY | 1 cut(s) | 638 |
| RsaI | GTAC | 1 cut(s) | 134 |
| RsaNI | GTAC | 1 cut(s) | 133 |
| RseI | CAYNNNNRTG | 1 cut(s) | 177 |
| SaqAI | TTAA | 4 cut(s) | 402, 470, 576, 688 |
| Sau3AI | GATC | 5 cut(s) | 101, 118, 271, 418, 638 |
| Sau96I | GGNCC | 2 cut(s) | 21, 485 |
| ScaI | AGTACT | 1 cut(s) | 134 |
| ScrFI | CCNGG | 1 cut(s) | 670 |
| SetI | ASST | 9 cut(s) | 36, 85, 194, 231, 258, 313, 517, 666, 671 |
| SexAI | ACCWGGT | 1 cut(s) | 668 |
| SfaNI | GCATC | 1 cut(s) | 637 |
| SinI | GGWCC | 1 cut(s) | 21 |
| SmiMI | CAYNNNNRTG | 1 cut(s) | 177 |
| SmlI | CTYRAG | 1 cut(s) | 344 |
| SmoI | CTYRAG | 1 cut(s) | 344 |
| Sse9I | AATT | 4 cut(s) | 141, 297, 399, 656 |
| SsiI | CCGC | 1 cut(s) | 505 |
| SspMI | CTAG | 1 cut(s) | 516 |
| StyD4I | CCNGG | 1 cut(s) | 668 |
| StyI | CCWWGG | 1 cut(s) | 515 |
| TaaI | ACNGT | 3 cut(s) | 289, 336, 393 |
| TaqI | TCGA | 3 cut(s) | 100, 139, 277 |
| TasI | AATT | 4 cut(s) | 141, 297, 399, 656 |
| TatI | WGTACW | 1 cut(s) | 132 |
| TfiI | GAWTC | 3 cut(s) | 71, 364, 370 |
| Tru1I | TTAA | 4 cut(s) | 402, 470, 576, 688 |
| Tru9I | TTAA | 4 cut(s) | 402, 470, 576, 688 |
| TscAI | CASTG | 1 cut(s) | 112 |
| TseFI | GTSAC | 1 cut(s) | 544 |
| Tsp45I | GTSAC | 1 cut(s) | 544 |
| TspDTI | ATGAA | 2 cut(s) | 328, 546 |
| TspGWI | ACGGA | 1 cut(s) | 276 |
| TspRI | CASTG | 1 cut(s) | 112 |
| VpaK11BI | GGWCC | 1 cut(s) | 21 |
| XapI | RAATTY | 1 cut(s) | 141 |
| XmaJI | CCTAGG | 1 cut(s) | 515 |
| XmiI | GTMKAC | 1 cut(s) | 36 |
| XspI | CTAG | 1 cut(s) | 516 |
| ZrmI | AGTACT | 1 cut(s) | 134 |