RLG00000008351

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr2
OG0000108
Physical Location & Seq
Reverse (-)
29318728 .. 29321451
2724 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000008351

Sequence Viewer

Length: 1566 bp
ATGGTGTCTTACGAGTATATTCTGGGTGGGTTCTTAGCTTCTTTGCTTGCCTTTGTTTTCTTCATGATCATCAGTACTACTCTTGGTGGAAACAAAAAGGTCAAAGCTTTAAGTGGAGGAGCAAAGAGTAATGGGTTTCAGCCGGAAATGGAGGAGGACAAAAGTACCGACGTCGTCATTGTCGGCGCCGGAGTTGCCGGTGCAGCTCTAGCTTACACTCTTGCCAAGGAAGGACGCCGTGTGCATGTCATCGAAAGAGACTTAACTGAGCCAGACAGAATTGTTGGTGAGCTGTTGCAGCCTGGGGGTTATCTCAAGTTGATTGAGTTGGGTCTTGAGGACTGTGCAAATGAGTCCATTGATGCTCAGAAGGTGTTTGGTTATGCTCTTTACAAAGATGGGAAGGATACAAAACTGTCTTACCCCTTGGAAAAGTACAGTGCAGATGTCGCCGGGAGAAGTTTCCACAATGGTCGTTTCATTCAAAGAATGCGAGAAAAAGCTGCAACTCTTGCAAATGTAAAATTGGAACAAGGATCAGTGACAACACTAATTGAGGAGAAGGGCATTGTCAAAGGCGTGATTTACAAGAACAAGGCTGGAGAGGAGCTGAGAGCATATGCTCCACTAACAATCGTGTGTGATGGATGCTTTTCAAATCTGCGCACATCTCTCAGTGCTCCAAAGGTTGAAAATCCCTCTTGTTTTGTTGGTTTGATTTTGGAGAACTGTGACCTTCCACATGCAAATCATGGACATGTGATTTTGGGAGACCCTTCACCCATCCTGTTTTATCCCATCAGTAACACCGAGGTTCGTTGTTTGGTAGATGTACCTGGAACAAAAGTGCCTTCAGTAGCTAATGGTGAAATGGCCAAGTATTTGAAATCTGTGGTGGCTCCTCAGATTCCCCCACAGCTGCACAATGCTTTTATGGCAGCAGTAGAGAAAGGAAACATCAGAACAATGCAAAACAAAAGCATGGCCGCTAATCCTGTTCCCACTCCTGGTGCAATTTTATTGGGGGATGCATTCAACATGAGGCATCCATTAACAGGAGGAGGAATGACTGTGGCTCTTTCAGACATTGTTCTTCTCCGTAATCTTCTTAGACCCCTACGTGATCTCAGTGACGCACCTGCTTTGTGCAATTACCTTGAAGCATTCTACACACTTCGTAAGCCTGTGTCATCTACCATAAACACATTGGCAGGTGCTTTATACAAGGTGTTTTGTGCATCACCTGATCCAGCAAAACAGGAAATGCGTGAAGCATGTTTTGACTATCTGAGCCTTGGAGGTATCTGTTCATATGGACCAGTATCTCTGCTCTCTGGTCTTAACCCTCGTCCGCTGCACTTATTTCTCCATTTCTTTGCCGTTGCCATCTATGGCGTCGGACGCTTAATGCTCCCCTTCCCTTCACCTCAGCGCATGTGGCTTGGGGCTAGATTGATCTTGAGTGCATCAAGCATCATATTCCCGATTATTAAGGGGGAAGGAGTTAGACAGATGTTCTTTCCTGCAACAGTGCCAGCATTTTACAGATCTCCTCCTCTTCACTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

522

Amino Acids

56.52

Weight (kDa)

8.64

Isoelectric Point (pI)

42.87

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 56 - 368 4.8e-20 FAD binding domain
DAO PF01266 57 - 87 6.2e-08 FAD dependent oxidoreductase
NAD_binding_8 PF13450 60 - 86 2.3e-06 NAD(P)-binding Rossmann-like domain
SE PF08491 208 - 480 6.5e-118 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 2 cut(s) 1147, 1202
AatII GACGTC 1 cut(s) 174
Acc16I TGCGCA 1 cut(s) 665
Acc36I ACCTGC 2 cut(s) 1147, 1202
AccB1I GGYRCC 1 cut(s) 185
AciI CCGC 2 cut(s) 987, 1352
AclWI GGATC 2 cut(s) 544, 1241
AcoI YGGCCR 2 cut(s) 873, 984
AcuI CTGAAG 1 cut(s) 837
AcyI GRCGYC 4 cut(s) 171, 186, 235, 1395
AfaI GTAC 4 cut(s) 76, 166, 437, 834
AfiI CCNNNNNNNGG 2 cut(s) 1007, 1055
AflIII ACRYGT 1 cut(s) 757
AgsI TTSAA 6 cut(s) 485, 657, 692, 886, 1036, 1160
AjnI CCWGG 3 cut(s) 301, 835, 1006
AluBI AGCT 9 cut(s) 38, 107, 206, 212, 292, 503, 610, 860, 919
AluI AGCT 9 cut(s) 38, 107, 206, 212, 292, 503, 610, 860, 919
Alw21I GWGCWC 1 cut(s) 682
Alw26I GTCTC 2 cut(s) 252, 765
AlwI GGATC 2 cut(s) 544, 1241
AoxI GGCC 2 cut(s) 873, 984
ApeKI GCWGC 6 cut(s) 203, 298, 503, 919, 938, 1354
AspLEI GCGC 3 cut(s) 188, 666, 1434
AspS9I GGNCC 1 cut(s) 1316
AsuC2I CCSGG 1 cut(s) 454
AsuHPI GGTGA 5 cut(s) 299, 771, 878, 1233, 1416
AvaII GGWCC 1 cut(s) 1316
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BalI TGGCCA 1 cut(s) 875
BanI GGYRCC 1 cut(s) 185
Bbv12I GWGCWC 1 cut(s) 682
BbvCI CCTCAGC 1 cut(s) 1428
BbvI GCAGC 6 cut(s) 215, 310, 490, 906, 950, 1341
BccI CCATC 5 cut(s) 392, 638, 791, 806, 1394
BceAI ACGGC 2 cut(s) 222, 1364
BciT130I CCWGG 3 cut(s) 303, 837, 1008
BciVI GTATCC 1 cut(s) 400
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 454
BcoDI GTCTC 2 cut(s) 252, 765
BfaI CTAG 2 cut(s) 209, 1449
BfoI RGCGCY 1 cut(s) 189
BfuAI ACCTGC 2 cut(s) 1147, 1202
BfuI GTATCC 1 cut(s) 400
BglII AGATCT 1 cut(s) 1547
BisI GCNGC 7 cut(s) 204, 299, 504, 920, 939, 987, 1355
BlsI GCNGC 7 cut(s) 205, 300, 505, 921, 940, 988, 1356
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 4 cut(s) 303, 454, 837, 1008
Bme18I GGWCC 1 cut(s) 1316
BmgT120I GGNCC 1 cut(s) 1316
BmiI GGNNCC 2 cut(s) 187, 900
BmrFI CCNGG 4 cut(s) 303, 454, 837, 1008
BmsI GCATC 7 cut(s) 352, 638, 1018, 1054, 1247, 1475, 1482
BpmI CTGGAG 1 cut(s) 621
Bpu10I CCTNAGC 1 cut(s) 1428
BpuEI CTTGAG 3 cut(s) 299, 356, 1480
BpuMI CCSGG 1 cut(s) 454
BsaAI YACGTR 1 cut(s) 1121
BsaHI GRCGYC 4 cut(s) 171, 186, 235, 1395
BsaI GGTCTC 1 cut(s) 765
BsaJI CCNNGG 5 cut(s) 225, 302, 426, 810, 1294
Bsc4I CCNNNNNNNGG 2 cut(s) 1007, 1055
Bse118I RCCGGY 1 cut(s) 197
Bse1I ACTGG 1 cut(s) 1319
BseBI CCWGG 3 cut(s) 303, 837, 1008
BseDI CCNNGG 5 cut(s) 225, 302, 426, 810, 1294
BseGI GGATG 4 cut(s) 653, 783, 1033, 1045
BseLI CCNNNNNNNGG 2 cut(s) 1007, 1055
BseMII CTCAG 8 cut(s) 258, 380, 602, 688, 917, 1141, 1280, 1442
BseNI ACTGG 1 cut(s) 1319
BseRI GAGGAG 8 cut(s) 132, 167, 572, 620, 891, 1074, 1542, 1545
BseXI GCAGC 6 cut(s) 215, 310, 490, 906, 950, 1341
BsgI GTGCAG 4 cut(s) 222, 462, 905, 1340
BshFI GGCC 2 cut(s) 875, 986
BshNI GGYRCC 1 cut(s) 185
BsiHKAI GWGCWC 1 cut(s) 682
BsiSI CCGG 4 cut(s) 143, 189, 198, 453
BslI CCNNNNNNNGG 2 cut(s) 1007, 1055
BsmAI GTCTC 2 cut(s) 252, 765
BsmI GAATGC 3 cut(s) 495, 1031, 1163
BsnI GGCC 2 cut(s) 875, 986
Bso31I GGTCTC 1 cut(s) 765
Bsp1286I GDGCHC 1 cut(s) 682
Bsp143I GATC 6 cut(s) 66, 536, 1123, 1246, 1455, 1547
BspACI CCGC 2 cut(s) 987, 1352
BspANI GGCC 2 cut(s) 875, 986
BspCNI CTCAG 8 cut(s) 259, 379, 603, 687, 916, 1140, 1281, 1441
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 2 cut(s) 187, 900
BspMI ACCTGC 2 cut(s) 1147, 1202
BspPI GGATC 2 cut(s) 544, 1241
BspT107I GGYRCC 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 765
BsrFI RCCGGY 1 cut(s) 197
BsrI ACTGG 1 cut(s) 1319
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 5 cut(s) 225, 302, 426, 810, 1294
BssMI GATC 6 cut(s) 66, 536, 1123, 1246, 1455, 1547
BssNI GRCGYC 4 cut(s) 171, 186, 235, 1395
BssT1I CCWWGG 3 cut(s) 225, 426, 1294
Bst2UI CCWGG 3 cut(s) 303, 837, 1008
Bst4CI ACNGT 6 cut(s) 344, 417, 440, 731, 1072, 1531
Bst6I CTCTTC 1 cut(s) 1563
BstACI GRCGYC 4 cut(s) 171, 186, 235, 1395
BstAPI GCANNNNNTGC 1 cut(s) 512
BstBAI YACGTR 1 cut(s) 1121
BstC8I GCNNGC 2 cut(s) 48, 1536
BstF5I GGATG 4 cut(s) 653, 783, 1033, 1045
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 3 cut(s) 188, 666, 1434
BstKTI GATC 6 cut(s) 69, 539, 1126, 1249, 1458, 1550
BstMAI GTCTC 2 cut(s) 252, 765
BstMBI GATC 6 cut(s) 66, 536, 1123, 1246, 1455, 1547
BstMWI GCNNNNNNNGC 9 cut(s) 194, 203, 209, 298, 449, 512, 935, 1401, 1438
BstNI CCWGG 3 cut(s) 303, 837, 1008
BstNSI RCATGY 5 cut(s) 248, 746, 761, 1278, 1438
BstSCI CCNGG 4 cut(s) 301, 452, 835, 1006
BstV1I GCAGC 6 cut(s) 215, 310, 490, 906, 950, 1341
BstX2I RGATCY 1 cut(s) 1547
BstYI RGATCY 1 cut(s) 1547
BsuI GTATCC 1 cut(s) 400
BsuRI GGCC 2 cut(s) 875, 986
BtsCI GGATG 4 cut(s) 653, 783, 1033, 1045
BtsIMutI CAGTG 6 cut(s) 445, 546, 682, 1135, 1536, 1561
BveI ACCTGC 2 cut(s) 1147, 1202
Cac8I GCNNGC 2 cut(s) 48, 1536
CciI TCATGA 1 cut(s) 63
CfoI GCGC 3 cut(s) 188, 666, 1434
Cfr10I RCCGGY 1 cut(s) 197
Cfr13I GGNCC 1 cut(s) 1316
CseI GACGC 4 cut(s) 243, 1142, 1384, 1410
Csp6I GTAC 4 cut(s) 75, 165, 436, 833
CviAII CATG 9 cut(s) 64, 245, 743, 752, 758, 982, 1039, 1275, 1435
CviQI GTAC 4 cut(s) 75, 165, 436, 833
DinI GGCGCC 1 cut(s) 187
DpnI GATC 6 cut(s) 68, 538, 1125, 1248, 1457, 1549
DpnII GATC 6 cut(s) 66, 536, 1123, 1246, 1455, 1547
EaeI YGGCCR 2 cut(s) 873, 984
Eam1104I CTCTTC 1 cut(s) 1563
EarI CTCTTC 1 cut(s) 1563
Eco130I CCWWGG 3 cut(s) 225, 426, 1294
Eco31I GGTCTC 1 cut(s) 765
Eco47I GGWCC 1 cut(s) 1316
Eco57I CTGAAG 1 cut(s) 837
EcoRII CCWGG 3 cut(s) 301, 835, 1006
EcoT14I CCWWGG 3 cut(s) 225, 426, 1294
EcoT22I ATGCAT 1 cut(s) 1033
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 3 cut(s) 225, 426, 1294
FaeI CATG 9 cut(s) 67, 248, 746, 755, 761, 985, 1042, 1278, 1438
FatI CATG 9 cut(s) 63, 244, 742, 751, 757, 981, 1038, 1274, 1434
FauNDI CATATG 2 cut(s) 619, 1312
FbaI TGATCA 1 cut(s) 66
Fnu4HI GCNGC 7 cut(s) 204, 299, 504, 920, 939, 987, 1355
FokI GGATG 4 cut(s) 660, 770, 1032, 1040
Fsp4HI GCNGC 7 cut(s) 204, 299, 504, 920, 939, 987, 1355
FspBI CTAG 2 cut(s) 209, 1449
FspI TGCGCA 1 cut(s) 665
GlaI GCGC 3 cut(s) 187, 665, 1433
GluI GCNGC 7 cut(s) 204, 299, 504, 920, 939, 987, 1355
GsuI CTGGAG 1 cut(s) 621
HaeII RGCGCY 1 cut(s) 189
HaeIII GGCC 2 cut(s) 875, 986
HapII CCGG 4 cut(s) 143, 189, 198, 453
HgaI GACGC 4 cut(s) 243, 1142, 1384, 1410
HhaI GCGC 3 cut(s) 188, 666, 1434
Hin1I GRCGYC 4 cut(s) 171, 186, 235, 1395
Hin1II CATG 9 cut(s) 67, 248, 746, 755, 761, 985, 1042, 1278, 1438
Hin6I GCGC 3 cut(s) 186, 664, 1432
HinP1I GCGC 3 cut(s) 186, 664, 1432
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 2 cut(s) 353, 907
HpaII CCGG 4 cut(s) 143, 189, 198, 453
HphI GGTGA 5 cut(s) 299, 771, 878, 1233, 1416
Hpy188I TCNGA 6 cut(s) 369, 906, 962, 1084, 1290, 1400
Hpy188III TCNNGA 4 cut(s) 64, 335, 1459, 1483
Hpy99I CGWCG 3 cut(s) 173, 176, 1400
HpyCH4III ACNGT 6 cut(s) 344, 417, 440, 731, 1072, 1531
HpyCH4IV ACGT 2 cut(s) 171, 1120
HpyF10VI GCNNNNNNNGC 9 cut(s) 194, 203, 209, 298, 449, 512, 935, 1401, 1438
HpySE526I ACGT 2 cut(s) 171, 1120
Hsp92I GRCGYC 4 cut(s) 171, 186, 235, 1395
Hsp92II CATG 9 cut(s) 67, 248, 746, 755, 761, 985, 1042, 1278, 1438
HspAI GCGC 3 cut(s) 186, 664, 1432
KasI GGCGCC 1 cut(s) 185
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 6 cut(s) 66, 536, 1123, 1246, 1455, 1547
LmnI GCTCC 6 cut(s) 119, 607, 628, 685, 904, 1416
Lsp1109I GCAGC 6 cut(s) 215, 310, 490, 906, 950, 1341
LweI GCATC 7 cut(s) 352, 638, 1018, 1054, 1247, 1475, 1482
MaeI CTAG 2 cut(s) 209, 1449
MaeII ACGT 2 cut(s) 171, 1120
MaeIII GTNAC 4 cut(s) 541, 731, 803, 1130
MalI GATC 6 cut(s) 68, 538, 1125, 1248, 1457, 1549
MboI GATC 6 cut(s) 66, 536, 1123, 1246, 1455, 1547
MboII GAAGA 4 cut(s) 52, 1085, 1097, 1550
MflI RGATCY 1 cut(s) 1547
MhlI GDGCHC 1 cut(s) 682
MlsI TGGCCA 1 cut(s) 875
MluCI AATT 5 cut(s) 279, 524, 552, 1014, 1150
MluNI TGGCCA 1 cut(s) 875
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 362
MmeI TCCRAC 1 cut(s) 1378
Mox20I TGGCCA 1 cut(s) 875
Mph1103I ATGCAT 1 cut(s) 1033
MscI TGGCCA 1 cut(s) 875
MseI TTAA 6 cut(s) 110, 263, 1052, 1341, 1406, 1491
MslI CAYNNNNRTG 1 cut(s) 756
Msp20I TGGCCA 1 cut(s) 875
MspA1I CMGCKG 2 cut(s) 919, 1354
MspI CCGG 4 cut(s) 143, 189, 198, 453
MspR9I CCNGG 4 cut(s) 303, 454, 837, 1008
Mva1269I GAATGC 3 cut(s) 495, 1031, 1163
MvaI CCWGG 3 cut(s) 303, 837, 1008
MwoI GCNNNNNNNGC 9 cut(s) 194, 203, 209, 298, 449, 512, 935, 1401, 1438
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 454
NdeI CATATG 2 cut(s) 619, 1312
NdeII GATC 6 cut(s) 66, 536, 1123, 1246, 1455, 1547
NlaIII CATG 9 cut(s) 67, 248, 746, 755, 761, 985, 1042, 1278, 1438
NlaIV GGNNCC 2 cut(s) 187, 900
NmuCI GTSAC 3 cut(s) 541, 731, 1130
NsbI TGCGCA 1 cut(s) 665
NsiI ATGCAT 1 cut(s) 1033
NspI RCATGY 5 cut(s) 248, 746, 761, 1278, 1438
PagI TCATGA 1 cut(s) 63
PaqCI CACCTGC 2 cut(s) 1147, 1202
PciI ACATGT 1 cut(s) 757
PctI GAATGC 3 cut(s) 495, 1031, 1163
PfeI GAWTC 1 cut(s) 907
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 7 cut(s) 205, 300, 505, 921, 940, 988, 1356
PleI GAGTC 1 cut(s) 361
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 361
Ppu21I YACGTR 1 cut(s) 1121
PscI ACATGT 1 cut(s) 757
Psp6I CCWGG 3 cut(s) 301, 835, 1006
PspGI CCWGG 3 cut(s) 301, 835, 1006
PspN4I GGNNCC 2 cut(s) 187, 900
PspPI GGNCC 1 cut(s) 1316
PsuI RGATCY 1 cut(s) 1547
PsyI GACNNNGTC 1 cut(s) 173
PvuII CAGCTG 1 cut(s) 919
RsaI GTAC 4 cut(s) 76, 166, 437, 834
RsaNI GTAC 4 cut(s) 75, 165, 436, 833
RseI CAYNNNNRTG 1 cut(s) 756
SaqAI TTAA 6 cut(s) 110, 263, 1052, 1341, 1406, 1491
SatI GCNGC 7 cut(s) 204, 299, 504, 920, 939, 987, 1355
Sau3AI GATC 6 cut(s) 66, 536, 1123, 1246, 1455, 1547
Sau96I GGNCC 1 cut(s) 1316
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 362
ScrFI CCNGG 4 cut(s) 303, 454, 837, 1008
SduI GDGCHC 1 cut(s) 682
SfaNI GCATC 7 cut(s) 352, 638, 1018, 1054, 1247, 1475, 1482
SfoI GGCGCC 1 cut(s) 187
SinI GGWCC 1 cut(s) 1316
SmiMI CAYNNNNRTG 1 cut(s) 756
SmlI CTYRAG 3 cut(s) 314, 335, 1459
SmoI CTYRAG 3 cut(s) 314, 335, 1459
Sse9I AATT 5 cut(s) 279, 524, 552, 1014, 1150
SsiI CCGC 2 cut(s) 987, 1352
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 2 cut(s) 209, 1449
StyD4I CCNGG 4 cut(s) 301, 452, 835, 1006
StyI CCWWGG 3 cut(s) 225, 426, 1294
TaaI ACNGT 6 cut(s) 344, 417, 440, 731, 1072, 1531
TaiI ACGT 2 cut(s) 174, 1123
TaqI TCGA 1 cut(s) 252
TasI AATT 5 cut(s) 279, 524, 552, 1014, 1150
TatI WGTACW 2 cut(s) 74, 435
TauI GCSGC 1 cut(s) 989
TfiI GAWTC 1 cut(s) 907
Tru1I TTAA 6 cut(s) 110, 263, 1052, 1341, 1406, 1491
Tru9I TTAA 6 cut(s) 110, 263, 1052, 1341, 1406, 1491
TscAI CASTG 5 cut(s) 445, 546, 682, 1135, 1536
TseFI GTSAC 3 cut(s) 541, 731, 1130
TseI GCWGC 6 cut(s) 203, 298, 503, 919, 938, 1354
Tsp45I GTSAC 3 cut(s) 541, 731, 1130
TspDTI ATGAA 3 cut(s) 52, 469, 1299
TspGWI ACGGA 1 cut(s) 1088
TspRI CASTG 5 cut(s) 445, 546, 682, 1135, 1536
Tth111I GACNNNGTC 1 cut(s) 173
VpaK11BI GGWCC 1 cut(s) 1316
XceI RCATGY 5 cut(s) 248, 746, 761, 1278, 1438
XcmI CCANNNNNNNNNTGG 1 cut(s) 1204
XspI CTAG 2 cut(s) 209, 1449
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 76
Zsp2I ATGCAT 1 cut(s) 1033
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.