Rorug05G0521900

Squalene monooxygenase-like

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000005
Physical Location & Seq
Reverse (-)
70753609 .. 70754219
611 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug05G0521900.1

Sequence Viewer

Length: 507 bp
ATGCAACCAGCTCCAAAACTGGCTAACCCTCGAGAATGTGGCCTGGAGGGAGAAAAGAAAGGAGAGTTGGAATCTCGCAACAAGCGAGCCGTGACGGCTCTGTACGACGCCTTCAACTCCAAAGACGTTGACGTTGTTCACCTCCTCCTCGCGCCCTACCTAGAGTGGTGGTTCCATGGCCCCCCTACTCATCAGCATTTGAACCGCCTCCTCACCGGTGCGCCGCCGTACGACTCGTCGTTCATATTCCTTCCTCTGTCGATTGTTGCATTCGGATCAATGGTGGTGGCTGAGGGATACGAGGAGGGTCATTCGGTCTCGTGGGTGCACGCGTGGACCGTCACAGATGGGATAATTACCCAAGTGAGGGAGTACTACAACACGTCCGTCACGGTTACCAGGTTAATCTCACCGGAAACTACATCACGGTCAGGTAGTTGCCAGAGTGTTTGGGAGAGTAAGCTCTCTGATAATAAGTCTGTACCTGGCCTCGTATTGGCCCTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
Pfam Domains
Protein Families

Protein Analysis

168

Amino Acids

18.64

Weight (kDa)

5.84

Isoelectric Point (pI)

37.42

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
WI12 PF07107 69 - 168 1.8e-37 Wound-induced protein WI12
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
Loading...
Style Settings
Image
Tree File
Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 2 cut(s) 152, 332
AciI CCGC 2 cut(s) 205, 224
AclWI GGATC 1 cut(s) 283
AcyI GRCGYC 1 cut(s) 108
AfaI GTAC 4 cut(s) 104, 230, 374, 483
AfiI CCNNNNNNNGG 3 cut(s) 366, 367, 496
AflIII ACRYGT 2 cut(s) 330, 381
AgeI ACCGGT 1 cut(s) 215
AgsI TTSAA 2 cut(s) 115, 202
AjiI CACGTC 1 cut(s) 384
AjnI CCWGG 3 cut(s) 42, 398, 484
AjuI GAANNNNNNNTTGG 2 cut(s) 50, 82
AluBI AGCT 2 cut(s) 11, 463
AluI AGCT 2 cut(s) 11, 463
Alw21I GWGCWC 1 cut(s) 330
Alw26I GTCTC 1 cut(s) 322
Alw44I GTGCAC 1 cut(s) 326
AlwI GGATC 1 cut(s) 283
Ama87I CYCGRG 1 cut(s) 30
AoxI GGCC 4 cut(s) 40, 178, 487, 498
ApaLI GTGCAC 1 cut(s) 326
AsiGI ACCGGT 1 cut(s) 215
AspLEI GCGC 2 cut(s) 154, 223
AspS9I GGNCC 3 cut(s) 179, 336, 499
AsuHPI GGTGA 3 cut(s) 131, 205, 402
AvaI CYCGRG 1 cut(s) 30
AvaII GGWCC 1 cut(s) 336
BaeGI GKGCMC 1 cut(s) 330
BarI GAAGNNNNNNTAC 2 cut(s) 95, 127
BauI CACGAG 1 cut(s) 319
Bbv12I GWGCWC 1 cut(s) 330
BbvCI CCTCAGC 1 cut(s) 291
BccI CCATC 1 cut(s) 341
BceAI ACGGC 3 cut(s) 74, 111, 211
BciT130I CCWGG 3 cut(s) 44, 400, 486
BciVI GTATCC 1 cut(s) 290
BcoDI GTCTC 1 cut(s) 322
BfaI CTAG 1 cut(s) 161
BfmI CTRYAG 1 cut(s) 503
BfuI GTATCC 1 cut(s) 290
BglI GCCNNNNNGGC 1 cut(s) 95
BisI GCNGC 1 cut(s) 224
BlsI GCNGC 1 cut(s) 225
BmcAI AGTACT 1 cut(s) 374
Bme1390I CCNGG 3 cut(s) 44, 400, 486
Bme18I GGWCC 1 cut(s) 336
BmeT110I CYCGRG 1 cut(s) 30
BmgBI CACGTC 1 cut(s) 384
BmgT120I GGNCC 3 cut(s) 179, 336, 499
BmiI GGNNCC 2 cut(s) 173, 181
BmrFI CCNGG 3 cut(s) 44, 400, 486
BpmI CTGGAG 1 cut(s) 65
Bpu10I CCTNAGC 1 cut(s) 291
BsaHI GRCGYC 1 cut(s) 108
BsaI GGTCTC 1 cut(s) 322
BsaJI CCNNGG 1 cut(s) 175
BsaWI WCCGGW 2 cut(s) 215, 412
Bsc4I CCNNNNNNNGG 3 cut(s) 366, 367, 496
Bse118I RCCGGY 1 cut(s) 215
Bse1I ACTGG 1 cut(s) 24
BseBI CCWGG 3 cut(s) 44, 400, 486
BseDI CCNNGG 1 cut(s) 175
BseLI CCNNNNNNNGG 3 cut(s) 366, 367, 496
BseMII CTCAG 1 cut(s) 282
BseNI ACTGG 1 cut(s) 24
BseRI GAGGAG 4 cut(s) 134, 137, 200, 317
BseSI GKGCMC 1 cut(s) 330
Bsh1236I CGCG 2 cut(s) 152, 332
BshFI GGCC 4 cut(s) 42, 180, 489, 500
BshTI ACCGGT 1 cut(s) 215
BsiHKAI GWGCWC 1 cut(s) 330
BsiHKCI CYCGRG 1 cut(s) 30
BsiSI CCGG 2 cut(s) 216, 413
BsiWI CGTACG 1 cut(s) 228
BslI CCNNNNNNNGG 3 cut(s) 366, 367, 496
BsmAI GTCTC 1 cut(s) 322
BsmI GAATGC 1 cut(s) 269
BsnI GGCC 4 cut(s) 42, 180, 489, 500
Bso31I GGTCTC 1 cut(s) 322
BsoBI CYCGRG 1 cut(s) 30
Bsp1286I GDGCHC 1 cut(s) 330
Bsp143I GATC 1 cut(s) 275
Bsp19I CCATGG 1 cut(s) 175
BspACI CCGC 2 cut(s) 205, 224
BspANI GGCC 4 cut(s) 42, 180, 489, 500
BspCNI CTCAG 1 cut(s) 283
BspFNI CGCG 2 cut(s) 152, 332
BspLI GGNNCC 2 cut(s) 173, 181
BspPI GGATC 1 cut(s) 283
BspTNI GGTCTC 1 cut(s) 322
BsrFI RCCGGY 1 cut(s) 215
BsrI ACTGG 1 cut(s) 24
BssAI RCCGGY 1 cut(s) 215
BssECI CCNNGG 1 cut(s) 175
BssMI GATC 1 cut(s) 275
BssNI GRCGYC 1 cut(s) 108
BssSI CACGAG 1 cut(s) 319
BssT1I CCWWGG 1 cut(s) 175
Bst2BI CACGAG 1 cut(s) 319
Bst2UI CCWGG 3 cut(s) 44, 400, 486
Bst4CI ACNGT 3 cut(s) 340, 394, 429
BstACI GRCGYC 1 cut(s) 108
BstC8I GCNNGC 2 cut(s) 87, 330
BstDEI CTNAG 1 cut(s) 291
BstDSI CCRYGG 1 cut(s) 175
BstEII GGTNACC 1 cut(s) 394
BstFNI CGCG 2 cut(s) 152, 332
BstHHI GCGC 2 cut(s) 154, 223
BstKTI GATC 1 cut(s) 278
BstMAI GTCTC 1 cut(s) 322
BstMBI GATC 1 cut(s) 275
BstMWI GCNNNNNNNGC 1 cut(s) 95
BstNI CCWGG 3 cut(s) 44, 400, 486
BstPI GGTNACC 1 cut(s) 394
BstSCI CCNGG 3 cut(s) 42, 398, 484
BstSFI CTRYAG 1 cut(s) 503
BstSLI GKGCMC 1 cut(s) 330
BstUI CGCG 2 cut(s) 152, 332
BsuI GTATCC 1 cut(s) 290
BsuRI GGCC 4 cut(s) 42, 180, 489, 500
BtgI CCRYGG 1 cut(s) 175
BtrI CACGTC 1 cut(s) 384
Cac8I GCNNGC 2 cut(s) 87, 330
CfoI GCGC 2 cut(s) 154, 223
Cfr10I RCCGGY 1 cut(s) 215
Cfr13I GGNCC 3 cut(s) 179, 336, 499
CseI GACGC 1 cut(s) 116
CsiI ACCWGGT 1 cut(s) 398
Csp6I GTAC 4 cut(s) 103, 229, 373, 482
CspAI ACCGGT 1 cut(s) 215
CspCI CAANNNNNGTGG 2 cut(s) 267, 302
CviAII CATG 1 cut(s) 176
CviQI GTAC 4 cut(s) 103, 229, 373, 482
DdeI CTNAG 1 cut(s) 291
DpnI GATC 1 cut(s) 277
DpnII GATC 1 cut(s) 275
Eco130I CCWWGG 1 cut(s) 175
Eco31I GGTCTC 1 cut(s) 322
Eco47I GGWCC 1 cut(s) 336
Eco88I CYCGRG 1 cut(s) 30
Eco91I GGTNACC 1 cut(s) 394
EcoO65I GGTNACC 1 cut(s) 394
EcoRII CCWGG 3 cut(s) 42, 398, 484
EcoT14I CCWWGG 1 cut(s) 175
ErhI CCWWGG 1 cut(s) 175
FaeI CATG 1 cut(s) 179
FaiI YATR 3 cut(s) 177, 245, 505
FatI CATG 1 cut(s) 175
Fnu4HI GCNGC 1 cut(s) 224
Fsp4HI GCNGC 1 cut(s) 224
FspBI CTAG 1 cut(s) 161
GlaI GCGC 2 cut(s) 153, 222
GluI GCNGC 1 cut(s) 224
GsuI CTGGAG 1 cut(s) 65
HaeIII GGCC 4 cut(s) 42, 180, 489, 500
HapII CCGG 2 cut(s) 216, 413
HgaI GACGC 1 cut(s) 116
HhaI GCGC 2 cut(s) 154, 223
Hin1I GRCGYC 1 cut(s) 108
Hin1II CATG 1 cut(s) 179
Hin6I GCGC 2 cut(s) 152, 221
HinP1I GCGC 2 cut(s) 152, 221
HincII GTYRAC 1 cut(s) 130
HindII GTYRAC 1 cut(s) 130
HinfI GANTC 2 cut(s) 71, 233
HpaII CCGG 2 cut(s) 216, 413
HphI GGTGA 3 cut(s) 131, 205, 402
Hpy166II GTNNAC 4 cut(s) 130, 139, 328, 336
Hpy188I TCNGA 2 cut(s) 275, 469
Hpy188III TCNNGA 1 cut(s) 32
Hpy8I GTNNAC 4 cut(s) 130, 139, 328, 336
Hpy99I CGWCG 2 cut(s) 110, 241
HpyAV CCTTC 2 cut(s) 121, 260
HpyCH4III ACNGT 3 cut(s) 340, 394, 429
HpyCH4IV ACGT 3 cut(s) 126, 132, 383
HpyCH4V TGCA 3 cut(s) 4, 269, 328
HpyF10VI GCNNNNNNNGC 1 cut(s) 95
HpyF3I CTNAG 1 cut(s) 291
HpySE526I ACGT 3 cut(s) 126, 132, 383
Hsp92I GRCGYC 1 cut(s) 108
Hsp92II CATG 1 cut(s) 179
HspAI GCGC 2 cut(s) 152, 221
Kzo9I GATC 1 cut(s) 275
LmnI GCTCC 1 cut(s) 16
MabI ACCWGGT 1 cut(s) 398
MaeI CTAG 1 cut(s) 161
MaeII ACGT 3 cut(s) 126, 132, 383
MaeIII GTNAC 4 cut(s) 91, 340, 388, 394
MalI GATC 1 cut(s) 277
MboI GATC 1 cut(s) 275
MhlI GDGCHC 1 cut(s) 330
MluCI AATT 1 cut(s) 354
MluI ACGCGT 1 cut(s) 330
MlyI GAGTC 1 cut(s) 227
MmeI TCCRAC 1 cut(s) 48
MseI TTAA 1 cut(s) 404
MspI CCGG 2 cut(s) 216, 413
MspR9I CCNGG 3 cut(s) 44, 400, 486
Mva1269I GAATGC 1 cut(s) 269
MvaI CCWGG 3 cut(s) 44, 400, 486
MvnI CGCG 2 cut(s) 152, 332
MwoI GCNNNNNNNGC 1 cut(s) 95
NcoI CCATGG 1 cut(s) 175
NdeII GATC 1 cut(s) 275
NlaIII CATG 1 cut(s) 179
NlaIV GGNNCC 2 cut(s) 173, 181
NmuCI GTSAC 3 cut(s) 91, 340, 388
PaeR7I CTCGAG 1 cut(s) 30
PcsI WCGNNNNNNNCGW 2 cut(s) 82, 336
PctI GAATGC 1 cut(s) 269
PfeI GAWTC 1 cut(s) 71
Pfl23II CGTACG 1 cut(s) 228
PinAI ACCGGT 1 cut(s) 215
PkrI GCNGC 1 cut(s) 225
PleI GAGTC 1 cut(s) 227
PpsI GAGTC 1 cut(s) 227
Psp6I CCWGG 3 cut(s) 42, 398, 484
PspEI GGTNACC 1 cut(s) 394
PspGI CCWGG 3 cut(s) 42, 398, 484
PspLI CGTACG 1 cut(s) 228
PspN4I GGNNCC 2 cut(s) 173, 181
PspPI GGNCC 3 cut(s) 179, 336, 499
RsaI GTAC 4 cut(s) 104, 230, 374, 483
RsaNI GTAC 4 cut(s) 103, 229, 373, 482
SaqAI TTAA 1 cut(s) 404
SatI GCNGC 1 cut(s) 224
Sau3AI GATC 1 cut(s) 275
Sau96I GGNCC 3 cut(s) 179, 336, 499
ScaI AGTACT 1 cut(s) 374
SchI GAGTC 1 cut(s) 227
ScrFI CCNGG 3 cut(s) 44, 400, 486
SduI GDGCHC 1 cut(s) 330
SexAI ACCWGGT 1 cut(s) 398
SfcI CTRYAG 1 cut(s) 503
Sfr274I CTCGAG 1 cut(s) 30
SgrAI CRCCGGYG 1 cut(s) 215
SinI GGWCC 1 cut(s) 336
SlaI CTCGAG 1 cut(s) 30
SmlI CTYRAG 1 cut(s) 30
SmoI CTYRAG 1 cut(s) 30
Sse9I AATT 1 cut(s) 354
SsiI CCGC 2 cut(s) 205, 224
SspMI CTAG 1 cut(s) 161
StyD4I CCNGG 3 cut(s) 42, 398, 484
StyI CCWWGG 1 cut(s) 175
TaaI ACNGT 3 cut(s) 340, 394, 429
TaiI ACGT 3 cut(s) 129, 135, 386
TaqI TCGA 2 cut(s) 31, 260
TaqII GACCGA 1 cut(s) 304
TasI AATT 1 cut(s) 354
TatI WGTACW 1 cut(s) 372
TauI GCSGC 1 cut(s) 226
TfiI GAWTC 1 cut(s) 71
Tru1I TTAA 1 cut(s) 404
Tru9I TTAA 1 cut(s) 404
TseFI GTSAC 3 cut(s) 91, 340, 388
Tsp45I GTSAC 3 cut(s) 91, 340, 388
TspDTI ATGAA 1 cut(s) 232
TspGWI ACGGA 1 cut(s) 376
VneI GTGCAC 1 cut(s) 326
VpaK11BI GGWCC 1 cut(s) 336
XhoI CTCGAG 1 cut(s) 30
XspI CTAG 1 cut(s) 161
ZrmI AGTACT 1 cut(s) 374
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.