Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000002

Orthogroup ID

OG0000108

Physical Location & Seq

Genomic Coordinates Reverse (-)

72216067 .. 72222664

Gene Structure 6598 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_2G00134690.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 630 bp

ATGCCACCTTTTTGCAACCAATCAACGACTAGTAGCCTTGCCAACACTAGAACATGGAACTCTAGACCGGACCAAGATTTGGTCGATACCACAACGTTTGGACCATATTTTCCAAAGGTTCCAATCTTTCCTCATCAAAATTGTACGCCGGATGACCACACCAAGCATGATAGCTGTGCGACAATGCAGCCTCTTCTCATACCCAATCCACCGCAGTTGTGCGACGTCGACGGGTTAGACGGATCCACCGCAATCTATCACCCGGACACCAATGGTAAATCACACTCTTCCACAGCTAGAGCGATAATAGAGAAGATAAGAAATATAATTCCGGTTGCATCGACATTAAATACCATTGCAGGTGCCCTATACAAGGTGTTCTCTGCATCCCCTGATCAAGCAAGGAAGGAGATGCAACAAGCAATTCTTGGCTATGTAAGCCTTGGAGGTGTCTTTTCAACCGGACTGATGGCGCCGCTCTCTGGTCTAAACCCTTGCCCGCTGAGTTTAGTTCTCCATTTAATTCCTGTAGCAATATATGGTGTTGGTCGTTTGGTACTACCATTTCCTTCACCGAAACGCATATGGCTTGGGGCAAGATTAATTTGGGTAGGGATTTCTTCCCCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003824 GO:0004497 GO:0004506 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005783 GO:0006629 GO:0006694 GO:0006950 GO:0008150 GO:0008152 GO:0008202 GO:0008610 GO:0009058 GO:0009611 GO:0009719 GO:0009725 GO:0009753 GO:0010033 GO:0012505 GO:0016125 GO:0016126 GO:0016491 GO:0016705 GO:0016709 GO:0042221 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0050896 GO:0055114 GO:0071704 GO:1901360 GO:1901362 GO:1901576 GO:1901615 GO:1901617 GO:1901700

KEGG Pathways

Metabolic & Signaling

ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130

Pfam Domains

Protein Families

Protein Analysis

209

Amino Acids

22.57

Weight (kDa)

8.3

Isoelectric Point (pI)

42.1

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
SE	PF08491	111 - 196	9.1e-19	Squalene epoxidase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Tree File

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Publication-ready

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Orthologous Genes (Group: OG0000108)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT2G22830 AT4G37760
fragaria_vesca	FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica	MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica	Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis	pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis	RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata	RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora	Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii	Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa	Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha	Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana	Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	350
AatII	GACGTC	1 cut(s)	228
Acc36I	ACCTGC	1 cut(s)	350
AccB1I	GGYRCC	2 cut(s)	362, 472
AccB7I	CCANNNNNTGG	1 cut(s)	79
AccBSI	CCGCTC	1 cut(s)	478
AccI	GTMKAC	1 cut(s)	228
AciI	CCGC	4 cut(s)	212, 249, 476, 500
AclI	AACGTT	1 cut(s)	95
AclWI	GGATC	2 cut(s)	237, 250
AcyI	GRCGYC	2 cut(s)	225, 473
AfaI	GTAC	2 cut(s)	145, 558
AfiI	CCNNNNNNNGG	3 cut(s)	79, 373, 482
AgsI	TTSAA	1 cut(s)	459
AhlI	ACTAGT	1 cut(s)	29
AluBI	AGCT	2 cut(s)	174, 296
AluI	AGCT	2 cut(s)	174, 296
AlwI	GGATC	2 cut(s)	237, 250
ApeKI	GCWGC	1 cut(s)	187
AseI	ATTAAT	1 cut(s)	602
AspLEI	GCGC	1 cut(s)	475
AspS9I	GGNCC	2 cut(s)	70, 101
AsuC2I	CCSGG	1 cut(s)	263
AsuHPI	GGTGA	2 cut(s)	251, 564
AvaII	GGWCC	2 cut(s)	70, 101
BaeGI	GKGCMC	1 cut(s)	367
BamHI	GGATCC	1 cut(s)	242
BanI	GGYRCC	2 cut(s)	362, 472
BbvI	GCAGC	1 cut(s)	199
BccI	CCATC	1 cut(s)	463
BclI	TGATCA	1 cut(s)	394
BcnI	CCSGG	1 cut(s)	263
BcuI	ACTAGT	1 cut(s)	29
BfaI	CTAG	4 cut(s)	30, 48, 63, 297
BfmI	CTRYAG	1 cut(s)	528
BfoI	RGCGCY	1 cut(s)	476
BfuAI	ACCTGC	1 cut(s)	350
BisI	GCNGC	2 cut(s)	188, 476
BlsI	GCNGC	2 cut(s)	189, 477
Bme1390I	CCNGG	1 cut(s)	263
Bme18I	GGWCC	2 cut(s)	70, 101
BmgT120I	GGNCC	2 cut(s)	70, 101
BmiI	GGNNCC	4 cut(s)	120, 244, 364, 474
BmrFI	CCNGG	1 cut(s)	263
BmsI	GCATC	3 cut(s)	347, 395, 402
BpuMI	CCSGG	1 cut(s)	263
BsaHI	GRCGYC	2 cut(s)	225, 473
BsaJI	CCNNGG	1 cut(s)	442
BsaWI	WCCGGW	3 cut(s)	67, 331, 461
Bsc4I	CCNNNNNNNGG	3 cut(s)	79, 373, 482
Bse3DI	GCAATG	1 cut(s)	354
BseDI	CCNNGG	1 cut(s)	442
BseGI	GGATG	2 cut(s)	157, 386
BseLI	CCNNNNNNNGG	3 cut(s)	79, 373, 482
BseMI	GCAATG	1 cut(s)	354
BseMII	CTCAG	1 cut(s)	494
BseSI	GKGCMC	1 cut(s)	367
BseXI	GCAGC	1 cut(s)	199
BshNI	GGYRCC	2 cut(s)	362, 472
BsiSI	CCGG	5 cut(s)	68, 149, 263, 332, 462
BslI	CCNNNNNNNGG	3 cut(s)	79, 373, 482
Bsp1286I	GDGCHC	1 cut(s)	367
Bsp143I	GATC	2 cut(s)	242, 394
BspACI	CCGC	4 cut(s)	212, 249, 476, 500
BspCNI	CTCAG	1 cut(s)	495
BspLI	GGNNCC	4 cut(s)	120, 244, 364, 474
BspMI	ACCTGC	1 cut(s)	350
BspPI	GGATC	2 cut(s)	237, 250
BspT107I	GGYRCC	2 cut(s)	362, 472
BsrBI	CCGCTC	1 cut(s)	478
BsrDI	GCAATG	1 cut(s)	354
BssECI	CCNNGG	1 cut(s)	442
BssMI	GATC	2 cut(s)	242, 394
BssNI	GRCGYC	2 cut(s)	225, 473
BssT1I	CCWWGG	1 cut(s)	442
Bst6I	CTCTTC	2 cut(s)	198, 292
BstACI	GRCGYC	2 cut(s)	225, 473
BstC8I	GCNNGC	1 cut(s)	500
BstDEI	CTNAG	1 cut(s)	503
BstENI	CCTNNNNNAGG	1 cut(s)	371
BstF5I	GGATG	2 cut(s)	157, 386
BstH2I	RGCGCY	1 cut(s)	476
BstHHI	GCGC	1 cut(s)	475
BstKTI	GATC	2 cut(s)	245, 397
BstMBI	GATC	2 cut(s)	242, 394
BstMWI	GCNNNNNNNGC	1 cut(s)	438
BstSCI	CCNGG	1 cut(s)	261
BstSFI	CTRYAG	1 cut(s)	528
BstSLI	GKGCMC	1 cut(s)	367
BstV1I	GCAGC	1 cut(s)	199
BstX2I	RGATCY	1 cut(s)	242
BstYI	RGATCY	1 cut(s)	242
BtsCI	GGATG	2 cut(s)	157, 386
BveI	ACCTGC	1 cut(s)	350
Cac8I	GCNNGC	1 cut(s)	500
CfoI	GCGC	1 cut(s)	475
Cfr13I	GGNCC	2 cut(s)	70, 101
Csp6I	GTAC	2 cut(s)	144, 557
CspCI	CAANNNNNGTGG	4 cut(s)	79, 114, 198, 233
CviAII	CATG	2 cut(s)	54, 167
CviJI	RGCY	7 cut(s)	36, 174, 190, 296, 432, 441, 589
CviKI_1	RGCY	7 cut(s)	36, 174, 190, 296, 432, 441, 589
CviQI	GTAC	2 cut(s)	144, 557
DdeI	CTNAG	1 cut(s)	503
DinI	GGCGCC	1 cut(s)	474
DpnI	GATC	2 cut(s)	244, 396
DpnII	GATC	2 cut(s)	242, 394
Eam1104I	CTCTTC	2 cut(s)	198, 292
EarI	CTCTTC	2 cut(s)	198, 292
Eco130I	CCWWGG	1 cut(s)	442
Eco47I	GGWCC	2 cut(s)	70, 101
EcoNI	CCTNNNNNAGG	1 cut(s)	371
EcoT14I	CCWWGG	1 cut(s)	442
EgeI	GGCGCC	1 cut(s)	474
EheI	GGCGCC	1 cut(s)	474
ErhI	CCWWGG	1 cut(s)	442
FaeI	CATG	2 cut(s)	57, 170
FalI	AAGNNNNNCTT	2 cut(s)	411, 443
FatI	CATG	2 cut(s)	53, 166
FauI	CCCGC	1 cut(s)	507
FauNDI	CATATG	1 cut(s)	584
FbaI	TGATCA	1 cut(s)	394
FblI	GTMKAC	1 cut(s)	228
Fnu4HI	GCNGC	2 cut(s)	188, 476
FokI	GGATG	2 cut(s)	164, 373
Fsp4HI	GCNGC	2 cut(s)	188, 476
FspBI	CTAG	4 cut(s)	30, 48, 63, 297
GlaI	GCGC	1 cut(s)	474
GluI	GCNGC	2 cut(s)	188, 476
HaeII	RGCGCY	1 cut(s)	476
HapII	CCGG	5 cut(s)	68, 149, 263, 332, 462
HhaI	GCGC	1 cut(s)	475
Hin1I	GRCGYC	2 cut(s)	225, 473
Hin1II	CATG	2 cut(s)	57, 170
Hin6I	GCGC	1 cut(s)	473
HinP1I	GCGC	1 cut(s)	473
HincII	GTYRAC	1 cut(s)	229
HindII	GTYRAC	1 cut(s)	229
HpaII	CCGG	5 cut(s)	68, 149, 263, 332, 462
HphI	GGTGA	2 cut(s)	251, 564
Hpy166II	GTNNAC	1 cut(s)	229
Hpy188III	TCNNGA	1 cut(s)	63
Hpy8I	GTNNAC	1 cut(s)	229
Hpy99I	CGWCG	3 cut(s)	227, 230, 233
HpyAV	CCTTC	2 cut(s)	400, 579
HpyCH4IV	ACGT	2 cut(s)	95, 225
HpyCH4V	TGCA	6 cut(s)	15, 187, 338, 359, 386, 415
HpyF10VI	GCNNNNNNNGC	1 cut(s)	438
HpyF3I	CTNAG	1 cut(s)	503
HpySE526I	ACGT	2 cut(s)	95, 225
Hsp92I	GRCGYC	2 cut(s)	225, 473
Hsp92II	CATG	2 cut(s)	57, 170
HspAI	GCGC	1 cut(s)	473
KasI	GGCGCC	1 cut(s)	472
Ksp22I	TGATCA	1 cut(s)	394
Kzo9I	GATC	2 cut(s)	242, 394
LpnPI	CCDG	9 cut(s)	81, 162, 276, 345, 345, 405, 468, 475, 540
Lsp1109I	GCAGC	1 cut(s)	199
LweI	GCATC	3 cut(s)	347, 395, 402
MaeI	CTAG	4 cut(s)	30, 48, 63, 297
MaeII	ACGT	2 cut(s)	95, 225
MalI	GATC	2 cut(s)	244, 396
MbiI	CCGCTC	1 cut(s)	478
MboI	GATC	2 cut(s)	242, 394
MboII	GAAGA	4 cut(s)	185, 279, 325, 612
MflI	RGATCY	1 cut(s)	242
MhlI	GDGCHC	1 cut(s)	367
MluCI	AATT	5 cut(s)	139, 327, 423, 522, 603
Mly113I	GGCGCC	1 cut(s)	473
MnlI	CCTC	3 cut(s)	141, 201, 440
MseI	TTAA	4 cut(s)	347, 521, 602, 628
MspA1I	CMGCKG	1 cut(s)	502
MspI	CCGG	5 cut(s)	68, 149, 263, 332, 462
MspR9I	CCNGG	1 cut(s)	263
MwoI	GCNNNNNNNGC	1 cut(s)	438
NarI	GGCGCC	1 cut(s)	473
NciI	CCSGG	1 cut(s)	263
NdeI	CATATG	1 cut(s)	584
NdeII	GATC	2 cut(s)	242, 394
NlaIII	CATG	2 cut(s)	57, 170
NlaIV	GGNNCC	4 cut(s)	120, 244, 364, 474
PaqCI	CACCTGC	1 cut(s)	350
PflMI	CCANNNNNTGG	1 cut(s)	79
PkrI	GCNGC	2 cut(s)	189, 477
PluTI	GGCGCC	1 cut(s)	476
PshBI	ATTAAT	1 cut(s)	602
Psp1406I	AACGTT	1 cut(s)	95
PspN4I	GGNNCC	4 cut(s)	120, 244, 364, 474
PspPI	GGNCC	2 cut(s)	70, 101
PsuI	RGATCY	1 cut(s)	242
RsaI	GTAC	2 cut(s)	145, 558
RsaNI	GTAC	2 cut(s)	144, 557
SalI	GTCGAC	1 cut(s)	227
SaqAI	TTAA	4 cut(s)	347, 521, 602, 628
SatI	GCNGC	2 cut(s)	188, 476
Sau3AI	GATC	2 cut(s)	242, 394
Sau96I	GGNCC	2 cut(s)	70, 101
ScrFI	CCNGG	1 cut(s)	263
SduI	GDGCHC	1 cut(s)	367
SetI	ASST	9 cut(s)	10, 98, 120, 176, 228, 298, 364, 378, 451
SfaNI	GCATC	3 cut(s)	347, 395, 402
SfcI	CTRYAG	1 cut(s)	528
SfoI	GGCGCC	1 cut(s)	474
SgrDI	CGTCGACG	1 cut(s)	227
SinI	GGWCC	2 cut(s)	70, 101
SpeI	ACTAGT	1 cut(s)	29
Sse9I	AATT	5 cut(s)	139, 327, 423, 522, 603
SsiI	CCGC	4 cut(s)	212, 249, 476, 500
SspDI	GGCGCC	1 cut(s)	472
SspMI	CTAG	4 cut(s)	30, 48, 63, 297
StyD4I	CCNGG	1 cut(s)	261
StyI	CCWWGG	1 cut(s)	442
TaiI	ACGT	2 cut(s)	98, 228
TaqI	TCGA	3 cut(s)	84, 228, 341
TasI	AATT	5 cut(s)	139, 327, 423, 522, 603
TauI	GCSGC	1 cut(s)	478
Tru1I	TTAA	4 cut(s)	347, 521, 602, 628
Tru9I	TTAA	4 cut(s)	347, 521, 602, 628
TseI	GCWGC	1 cut(s)	187
TspGWI	ACGGA	1 cut(s)	255
Van91I	CCANNNNNTGG	1 cut(s)	79
VpaK11BI	GGWCC	2 cut(s)	70, 101
VspI	ATTAAT	1 cut(s)	602
XagI	CCTNNNNNAGG	1 cut(s)	371
XbaI	TCTAGA	1 cut(s)	62
XmiI	GTMKAC	1 cut(s)	228
XspI	CTAG	4 cut(s)	30, 48, 63, 297
ZraI	GACGTC	1 cut(s)	226

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.