Rmu_sc0001982.1_g000019

squalene

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0001982.1
OG0000108
Physical Location & Seq
Forward (+)
71692 .. 72747
1056 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0001982.1_g000019.1.cds

Sequence Viewer

Length: 572 bp
atggtgtcttacgagtatattctgggtgggttcttagcttctttgcttgcctttgttttcttcatgatcatcagtactactcttggtggaaacaaaaaggtcaaagctttaagtggaggagcaaagagtaatgagtttcagccggaaatggaggaggacaaaagtaccgacgtcgtcattgtcggcgccggagttgccggtgcagctctagcttacactcttgccaaggaaggacgccgtgtgcatgtcatcgaaagagacttaactgagccagacagaattgttggtgagctgttgcagcctgggggttatctcaagttgattgagttgggtcttgaggtactaagtcgacagacattggtttttaatcaaaactatctctttgtggctgcagactgtgcaaatgagtccattgatgctcagaaggtgtttggttatgctctttacaaagatgggaaggatacaaaactgtcttaccccttggagaactacagtgcagatgtcgccgggagaagtttccacaatggtcgtttcattcaaagaatgcgagaaaaagctgcaactcttgcaaa
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

190

Amino Acids

20.81

Weight (kDa)

5.77

Isoelectric Point (pI)

27.3

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 174
AccB1I GGYRCC 1 cut(s) 185
AccI GTMKAC 1 cut(s) 349
AcyI GRCGYC 3 cut(s) 171, 186, 235
AfaI GTAC 3 cut(s) 76, 166, 342
AgsI TTSAA 1 cut(s) 539
AjnI CCWGG 1 cut(s) 301
AluBI AGCT 6 cut(s) 38, 107, 206, 212, 292, 557
AluI AGCT 6 cut(s) 38, 107, 206, 212, 292, 557
Alw26I GTCTC 1 cut(s) 252
ApeKI GCWGC 4 cut(s) 203, 298, 389, 557
AspLEI GCGC 1 cut(s) 188
AsuC2I CCSGG 1 cut(s) 508
AsuHPI GGTGA 1 cut(s) 299
BaeI ACNNNNGTAYC 2 cut(s) 148, 181
BanI GGYRCC 1 cut(s) 185
BbvI GCAGC 4 cut(s) 215, 310, 376, 544
BccI CCATC 1 cut(s) 446
BceAI ACGGC 1 cut(s) 222
BciT130I CCWGG 1 cut(s) 303
BciVI GTATCC 1 cut(s) 454
BclI TGATCA 1 cut(s) 66
BcnI CCSGG 1 cut(s) 508
BcoDI GTCTC 1 cut(s) 252
BfaI CTAG 1 cut(s) 209
BfmI CTRYAG 2 cut(s) 390, 490
BfoI RGCGCY 1 cut(s) 189
BfuI GTATCC 1 cut(s) 454
BisI GCNGC 4 cut(s) 204, 299, 390, 558
BlsI GCNGC 4 cut(s) 205, 300, 391, 559
BmcAI AGTACT 1 cut(s) 76
Bme1390I CCNGG 2 cut(s) 303, 508
BmiI GGNNCC 1 cut(s) 187
BmrFI CCNGG 2 cut(s) 303, 508
BmsI GCATC 1 cut(s) 406
BpuEI CTTGAG 2 cut(s) 299, 356
BpuMI CCSGG 1 cut(s) 508
BsaHI GRCGYC 3 cut(s) 171, 186, 235
BsaJI CCNNGG 3 cut(s) 225, 302, 480
Bse118I RCCGGY 1 cut(s) 197
BseBI CCWGG 1 cut(s) 303
BseDI CCNNGG 3 cut(s) 225, 302, 480
BseMII CTCAG 2 cut(s) 258, 434
BseRI GAGGAG 2 cut(s) 132, 167
BseXI GCAGC 4 cut(s) 215, 310, 376, 544
BsgI GTGCAG 2 cut(s) 222, 516
BshNI GGYRCC 1 cut(s) 185
BsiSI CCGG 4 cut(s) 143, 189, 198, 507
BsmAI GTCTC 1 cut(s) 252
BsmI GAATGC 1 cut(s) 549
Bsp143I GATC 1 cut(s) 66
BspCNI CTCAG 2 cut(s) 259, 433
BspHI TCATGA 1 cut(s) 63
BspLI GGNNCC 1 cut(s) 187
BspMAI CTGCAG 1 cut(s) 394
BspT107I GGYRCC 1 cut(s) 185
BsrFI RCCGGY 1 cut(s) 197
BssAI RCCGGY 1 cut(s) 197
BssECI CCNNGG 3 cut(s) 225, 302, 480
BssMI GATC 1 cut(s) 66
BssNI GRCGYC 3 cut(s) 171, 186, 235
BssT1I CCWWGG 2 cut(s) 225, 480
Bst2UI CCWGG 1 cut(s) 303
Bst4CI ACNGT 3 cut(s) 398, 471, 494
BstACI GRCGYC 3 cut(s) 171, 186, 235
BstAPI GCANNNNNTGC 2 cut(s) 398, 566
BstC8I GCNNGC 1 cut(s) 48
BstDEI CTNAG 4 cut(s) 34, 267, 344, 420
BstH2I RGCGCY 1 cut(s) 189
BstHHI GCGC 1 cut(s) 188
BstKTI GATC 1 cut(s) 69
BstMAI GTCTC 1 cut(s) 252
BstMBI GATC 1 cut(s) 66
BstMWI GCNNNNNNNGC 7 cut(s) 194, 203, 209, 298, 398, 503, 566
BstNI CCWGG 1 cut(s) 303
BstNSI RCATGY 1 cut(s) 248
BstSCI CCNGG 2 cut(s) 301, 506
BstSFI CTRYAG 2 cut(s) 390, 490
BstV1I GCAGC 4 cut(s) 215, 310, 376, 544
BsuI GTATCC 1 cut(s) 454
BtsIMutI CAGTG 1 cut(s) 499
Cac8I GCNNGC 1 cut(s) 48
CciI TCATGA 1 cut(s) 63
CfoI GCGC 1 cut(s) 188
Cfr10I RCCGGY 1 cut(s) 197
CseI GACGC 1 cut(s) 243
Csp6I GTAC 3 cut(s) 75, 165, 341
CviAII CATG 2 cut(s) 64, 245
CviQI GTAC 3 cut(s) 75, 165, 341
DdeI CTNAG 4 cut(s) 34, 267, 344, 420
DinI GGCGCC 1 cut(s) 187
DpnI GATC 1 cut(s) 68
DpnII GATC 1 cut(s) 66
Eco130I CCWWGG 2 cut(s) 225, 480
EcoRII CCWGG 1 cut(s) 301
EcoT14I CCWWGG 2 cut(s) 225, 480
EgeI GGCGCC 1 cut(s) 187
EheI GGCGCC 1 cut(s) 187
ErhI CCWWGG 2 cut(s) 225, 480
FaeI CATG 2 cut(s) 67, 248
FaiI YATR 4 cut(s) 18, 65, 246, 438
FatI CATG 2 cut(s) 63, 244
FbaI TGATCA 1 cut(s) 66
FblI GTMKAC 1 cut(s) 349
Fnu4HI GCNGC 4 cut(s) 204, 299, 390, 558
Fsp4HI GCNGC 4 cut(s) 204, 299, 390, 558
FspBI CTAG 1 cut(s) 209
GlaI GCGC 1 cut(s) 187
GluI GCNGC 4 cut(s) 204, 299, 390, 558
HaeII RGCGCY 1 cut(s) 189
HapII CCGG 4 cut(s) 143, 189, 198, 507
HgaI GACGC 1 cut(s) 243
HhaI GCGC 1 cut(s) 188
Hin1I GRCGYC 3 cut(s) 171, 186, 235
Hin1II CATG 2 cut(s) 67, 248
Hin6I GCGC 1 cut(s) 186
HinP1I GCGC 1 cut(s) 186
HincII GTYRAC 1 cut(s) 350
HindII GTYRAC 1 cut(s) 350
HindIII AAGCTT 1 cut(s) 105
HinfI GANTC 1 cut(s) 407
HpaII CCGG 4 cut(s) 143, 189, 198, 507
HphI GGTGA 1 cut(s) 299
Hpy166II GTNNAC 1 cut(s) 350
Hpy188I TCNGA 1 cut(s) 423
Hpy188III TCNNGA 2 cut(s) 64, 335
Hpy8I GTNNAC 1 cut(s) 350
Hpy99I CGWCG 2 cut(s) 173, 176
HpyAV CCTTC 3 cut(s) 224, 418, 451
HpyCH4III ACNGT 3 cut(s) 398, 471, 494
HpyCH4IV ACGT 1 cut(s) 171
HpyCH4V TGCA 8 cut(s) 203, 244, 298, 392, 401, 497, 560, 569
HpyF10VI GCNNNNNNNGC 7 cut(s) 194, 203, 209, 298, 398, 503, 566
HpyF3I CTNAG 4 cut(s) 34, 267, 344, 420
HpySE526I ACGT 1 cut(s) 171
Hsp92I GRCGYC 3 cut(s) 171, 186, 235
Hsp92II CATG 2 cut(s) 67, 248
HspAI GCGC 1 cut(s) 186
KasI GGCGCC 1 cut(s) 185
Ksp22I TGATCA 1 cut(s) 66
Kzo9I GATC 1 cut(s) 66
LmnI GCTCC 1 cut(s) 119
LpnPI CCDG 8 cut(s) 8, 156, 202, 211, 285, 288, 315, 520
Lsp1109I GCAGC 4 cut(s) 215, 310, 376, 544
LweI GCATC 1 cut(s) 406
MaeI CTAG 1 cut(s) 209
MaeII ACGT 1 cut(s) 171
MalI GATC 1 cut(s) 68
MboI GATC 1 cut(s) 66
MboII GAAGA 1 cut(s) 52
MluCI AATT 1 cut(s) 279
Mly113I GGCGCC 1 cut(s) 186
MlyI GAGTC 1 cut(s) 416
MnlI CCTC 4 cut(s) 110, 145, 148, 331
MseI TTAA 3 cut(s) 110, 263, 366
MspI CCGG 4 cut(s) 143, 189, 198, 507
MspR9I CCNGG 2 cut(s) 303, 508
Mva1269I GAATGC 1 cut(s) 549
MvaI CCWGG 1 cut(s) 303
MwoI GCNNNNNNNGC 7 cut(s) 194, 203, 209, 298, 398, 503, 566
NarI GGCGCC 1 cut(s) 186
NciI CCSGG 1 cut(s) 508
NdeII GATC 1 cut(s) 66
NlaIII CATG 2 cut(s) 67, 248
NlaIV GGNNCC 1 cut(s) 187
NspI RCATGY 1 cut(s) 248
PagI TCATGA 1 cut(s) 63
PctI GAATGC 1 cut(s) 549
PflFI GACNNNGTC 1 cut(s) 173
PkrI GCNGC 4 cut(s) 205, 300, 391, 559
PleI GAGTC 1 cut(s) 415
PluTI GGCGCC 1 cut(s) 189
PpsI GAGTC 1 cut(s) 415
Psp6I CCWGG 1 cut(s) 301
PspGI CCWGG 1 cut(s) 301
PspN4I GGNNCC 1 cut(s) 187
PstI CTGCAG 1 cut(s) 394
PsyI GACNNNGTC 1 cut(s) 173
RsaI GTAC 3 cut(s) 76, 166, 342
RsaNI GTAC 3 cut(s) 75, 165, 341
SalI GTCGAC 1 cut(s) 348
SaqAI TTAA 3 cut(s) 110, 263, 366
SatI GCNGC 4 cut(s) 204, 299, 390, 558
Sau3AI GATC 1 cut(s) 66
ScaI AGTACT 1 cut(s) 76
SchI GAGTC 1 cut(s) 416
ScrFI CCNGG 2 cut(s) 303, 508
SfaNI GCATC 1 cut(s) 406
SfcI CTRYAG 2 cut(s) 390, 490
SfoI GGCGCC 1 cut(s) 187
SmlI CTYRAG 2 cut(s) 314, 335
SmoI CTYRAG 2 cut(s) 314, 335
Sse9I AATT 1 cut(s) 279
SspDI GGCGCC 1 cut(s) 185
SspMI CTAG 1 cut(s) 209
StyD4I CCNGG 2 cut(s) 301, 506
StyI CCWWGG 2 cut(s) 225, 480
TaaI ACNGT 3 cut(s) 398, 471, 494
TaiI ACGT 1 cut(s) 174
TaqI TCGA 2 cut(s) 252, 349
TasI AATT 1 cut(s) 279
TatI WGTACW 1 cut(s) 74
Tru1I TTAA 3 cut(s) 110, 263, 366
Tru9I TTAA 3 cut(s) 110, 263, 366
TscAI CASTG 1 cut(s) 499
TseI GCWGC 4 cut(s) 203, 298, 389, 557
TspDTI ATGAA 2 cut(s) 52, 523
TspRI CASTG 1 cut(s) 499
Tth111I GACNNNGTC 1 cut(s) 173
XceI RCATGY 1 cut(s) 248
XmiI GTMKAC 1 cut(s) 349
XspI CTAG 1 cut(s) 209
ZraI GACGTC 1 cut(s) 172
ZrmI AGTACT 1 cut(s) 76
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.