Rh4AG168500

No description available

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr4A
Physical Location & Seq
Forward (+)
42373891 .. 42375598
1708 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh4AG168500.1

Sequence Viewer

Length: 252 bp
ATGAGGGGATCTGATGTTGCTCTTGTTGACGGCAGCCATGAAAGCATTGTAGCTAGAGCTGAGGGGGAATCTGAAACCCTTGGACTAGCTAGTCAAGTTCAGGGTTGCACCATGCTAGCATATCACCTTTGCAGTCAGTTTAGCAACATTCTTGCTGATAGCAGTAAAGCACTCAGTAAGCTGAGGCATGAGCATCGTAAGGAAGACAGTAAGCTGGGTCATGCACACCTTTACTCCCCTAATTCCAAATGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

83

Amino Acids

8.99

Weight (kDa)

6.57

Isoelectric Point (pI)

41.24

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready

Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 90
AclWI GGATC 1 cut(s) 16
AluBI AGCT 5 cut(s) 53, 59, 89, 181, 214
AluI AGCT 5 cut(s) 53, 59, 89, 181, 214
AlwI GGATC 1 cut(s) 16
ApeKI GCWGC 1 cut(s) 33
AsuHPI GGTGA 1 cut(s) 116
AsuNHI GCTAGC 1 cut(s) 115
BbsI GAAGAC 1 cut(s) 210
BbvCI CCTCAGC 2 cut(s) 60, 182
BbvI GCAGC 1 cut(s) 45
BceAI ACGGC 1 cut(s) 46
BcgI CGANNNNNNTGC 2 cut(s) 176, 210
BfaI CTAG 4 cut(s) 54, 86, 90, 116
BisI GCNGC 1 cut(s) 34
BlsI GCNGC 1 cut(s) 35
BmsI GCATC 1 cut(s) 202
BmtI GCTAGC 1 cut(s) 119
BpiI GAAGAC 1 cut(s) 210
Bpu10I CCTNAGC 2 cut(s) 60, 182
BsaJI CCNNGG 1 cut(s) 79
BsaXI ACNNNNNCTCC 2 cut(s) 218, 248
BseDI CCNNGG 1 cut(s) 79
BseMII CTCAG 3 cut(s) 51, 173, 187
BseXI GCAGC 1 cut(s) 45
BseYI CCCAGC 1 cut(s) 214
Bsp143I GATC 1 cut(s) 8
BspCNI CTCAG 3 cut(s) 52, 174, 186
BspOI GCTAGC 1 cut(s) 119
BspPI GGATC 1 cut(s) 16
BssECI CCNNGG 1 cut(s) 79
BssMI GATC 1 cut(s) 8
BssT1I CCWWGG 1 cut(s) 79
Bst4CI ACNGT 1 cut(s) 209
BstC8I GCNNGC 1 cut(s) 117
BstDEI CTNAG 3 cut(s) 60, 173, 182
BstKTI GATC 1 cut(s) 11
BstMBI GATC 1 cut(s) 8
BstMWI GCNNNNNNNGC 1 cut(s) 42
BstV1I GCAGC 1 cut(s) 45
BstV2I GAAGAC 1 cut(s) 210
BstX2I RGATCY 1 cut(s) 8
BstYI RGATCY 1 cut(s) 8
Cac8I GCNNGC 1 cut(s) 117
CviAII CATG 4 cut(s) 38, 112, 188, 221
CviJI RGCY 6 cut(s) 36, 53, 59, 89, 181, 214
CviKI_1 RGCY 6 cut(s) 36, 53, 59, 89, 181, 214
DdeI CTNAG 3 cut(s) 60, 173, 182
DpnI GATC 1 cut(s) 10
DpnII GATC 1 cut(s) 8
DrdI GACNNNNNNGTC 1 cut(s) 90
DseDI GACNNNNNNGTC 1 cut(s) 90
Eco130I CCWWGG 1 cut(s) 79
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
FaeI CATG 4 cut(s) 41, 115, 191, 224
FaiI YATR 5 cut(s) 39, 113, 121, 189, 222
FatI CATG 4 cut(s) 37, 111, 187, 220
Fnu4HI GCNGC 1 cut(s) 34
Fsp4HI GCNGC 1 cut(s) 34
FspBI CTAG 4 cut(s) 54, 86, 90, 116
GluI GCNGC 1 cut(s) 34
GsaI CCCAGC 1 cut(s) 218
Hin1II CATG 4 cut(s) 41, 115, 191, 224
HincII GTYRAC 1 cut(s) 28
HindII GTYRAC 1 cut(s) 28
HinfI GANTC 1 cut(s) 68
HphI GGTGA 1 cut(s) 116
Hpy166II GTNNAC 1 cut(s) 28
Hpy188I TCNGA 2 cut(s) 13, 73
Hpy8I GTNNAC 1 cut(s) 28
HpyCH4III ACNGT 1 cut(s) 209
HpyCH4V TGCA 3 cut(s) 108, 132, 224
HpyF10VI GCNNNNNNNGC 1 cut(s) 42
HpyF3I CTNAG 3 cut(s) 60, 173, 182
Hsp92II CATG 4 cut(s) 41, 115, 191, 224
Kzo9I GATC 1 cut(s) 8
LpnPI CCDG 2 cut(s) 86, 200
Lsp1109I GCAGC 1 cut(s) 45
LweI GCATC 1 cut(s) 202
MaeI CTAG 4 cut(s) 54, 86, 90, 116
MalI GATC 1 cut(s) 10
MboI GATC 1 cut(s) 8
MboII GAAGA 1 cut(s) 215
MflI RGATCY 1 cut(s) 8
MluCI AATT 1 cut(s) 241
MnlI CCTC 2 cut(s) 55, 177
MwoI GCNNNNNNNGC 1 cut(s) 42
NdeII GATC 1 cut(s) 8
NheI GCTAGC 1 cut(s) 115
NlaIII CATG 4 cut(s) 41, 115, 191, 224
PfeI GAWTC 1 cut(s) 68
PkrI GCNGC 1 cut(s) 35
PspFI CCCAGC 1 cut(s) 214
PsuI RGATCY 1 cut(s) 8
SatI GCNGC 1 cut(s) 34
Sau3AI GATC 1 cut(s) 8
SetI ASST 7 cut(s) 55, 61, 91, 129, 183, 216, 231
SfaNI GCATC 1 cut(s) 202
Sse9I AATT 1 cut(s) 241
SspMI CTAG 4 cut(s) 54, 86, 90, 116
StyI CCWWGG 1 cut(s) 79
TaaI ACNGT 1 cut(s) 209
TasI AATT 1 cut(s) 241
TfiI GAWTC 1 cut(s) 68
TseI GCWGC 1 cut(s) 33
TspDTI ATGAA 1 cut(s) 54
XspI CTAG 4 cut(s) 54, 86, 90, 116
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.