squalene
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AarI | CACCTGC | 1 cut(s) | 256 |
| Acc16I | TGCGCA | 1 cut(s) | 287 |
| Acc36I | ACCTGC | 1 cut(s) | 256 |
| AccII | CGCG | 1 cut(s) | 210 |
| AciI | CCGC | 1 cut(s) | 208 |
| AclWI | GGATC | 1 cut(s) | 66 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 116, 164 |
| AgsI | TTSAA | 2 cut(s) | 145, 269 |
| AjnI | CCWGG | 1 cut(s) | 115 |
| AluBI | AGCT | 1 cut(s) | 28 |
| AluI | AGCT | 1 cut(s) | 28 |
| AlwI | GGATC | 1 cut(s) | 66 |
| AspLEI | GCGC | 1 cut(s) | 288 |
| AxyI | CCTNAGG | 1 cut(s) | 12 |
| BciT130I | CCWGG | 1 cut(s) | 117 |
| BfuAI | ACCTGC | 1 cut(s) | 256 |
| Bme1390I | CCNGG | 1 cut(s) | 117 |
| BmiI | GGNNCC | 2 cut(s) | 9, 18 |
| BmrFI | CCNGG | 1 cut(s) | 117 |
| BmsI | GCATC | 3 cut(s) | 85, 163, 232 |
| BpmI | CTGGAG | 1 cut(s) | 138 |
| BsaBI | GATNNNNATC | 1 cut(s) | 99 |
| BsaJI | CCNNGG | 1 cut(s) | 180 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 116, 164 |
| Bse21I | CCTNAGG | 1 cut(s) | 12 |
| Bse3DI | GCAATG | 1 cut(s) | 281 |
| Bse8I | GATNNNNATC | 1 cut(s) | 99 |
| BseBI | CCWGG | 1 cut(s) | 117 |
| BseDI | CCNNGG | 1 cut(s) | 180 |
| BseGI | GGATG | 2 cut(s) | 100, 154 |
| BseJI | GATNNNNATC | 1 cut(s) | 99 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 116, 164 |
| BseMI | GCAATG | 1 cut(s) | 281 |
| BseMII | CTCAG | 1 cut(s) | 26 |
| BseRI | GAGGAG | 1 cut(s) | 183 |
| Bsh1236I | CGCG | 1 cut(s) | 210 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 116, 164 |
| Bsp143I | GATC | 3 cut(s) | 71, 211, 232 |
| BspACI | CCGC | 1 cut(s) | 208 |
| BspCNI | CTCAG | 1 cut(s) | 25 |
| BspFNI | CGCG | 1 cut(s) | 210 |
| BspLI | GGNNCC | 2 cut(s) | 9, 18 |
| BspMI | ACCTGC | 1 cut(s) | 256 |
| BspPI | GGATC | 1 cut(s) | 66 |
| BsrDI | GCAATG | 1 cut(s) | 281 |
| BssECI | CCNNGG | 1 cut(s) | 180 |
| BssMI | GATC | 3 cut(s) | 71, 211, 232 |
| Bst2UI | CCWGG | 1 cut(s) | 117 |
| Bst4CI | ACNGT | 1 cut(s) | 181 |
| BstDEI | CTNAG | 2 cut(s) | 12, 218 |
| BstDSI | CCRYGG | 1 cut(s) | 180 |
| BstF5I | GGATG | 2 cut(s) | 100, 154 |
| BstFNI | CGCG | 1 cut(s) | 210 |
| BstHHI | GCGC | 1 cut(s) | 288 |
| BstKTI | GATC | 3 cut(s) | 74, 214, 235 |
| BstMBI | GATC | 3 cut(s) | 71, 211, 232 |
| BstNI | CCWGG | 1 cut(s) | 117 |
| BstSCI | CCNGG | 1 cut(s) | 115 |
| BstUI | CGCG | 1 cut(s) | 210 |
| BstX2I | RGATCY | 1 cut(s) | 71 |
| BstYI | RGATCY | 1 cut(s) | 71 |
| Bsu36I | CCTNAGG | 1 cut(s) | 12 |
| BtgI | CCRYGG | 1 cut(s) | 180 |
| BtsCI | GGATG | 2 cut(s) | 100, 154 |
| BveI | ACCTGC | 1 cut(s) | 256 |
| CfoI | GCGC | 1 cut(s) | 288 |
| CviAII | CATG | 2 cut(s) | 76, 148 |
| CviJI | RGCY | 3 cut(s) | 8, 28, 185 |
| CviKI_1 | RGCY | 3 cut(s) | 8, 28, 185 |
| DdeI | CTNAG | 2 cut(s) | 12, 218 |
| DpnI | GATC | 3 cut(s) | 73, 213, 234 |
| DpnII | GATC | 3 cut(s) | 71, 211, 232 |
| Eco81I | CCTNAGG | 1 cut(s) | 12 |
| EcoRII | CCWGG | 1 cut(s) | 115 |
| FaeI | CATG | 2 cut(s) | 79, 151 |
| FaiI | YATR | 8 cut(s) | 31, 44, 77, 149, 197, 229, 256, 279 |
| FatI | CATG | 2 cut(s) | 75, 147 |
| FokI | GGATG | 2 cut(s) | 107, 141 |
| FspI | TGCGCA | 1 cut(s) | 287 |
| GlaI | GCGC | 1 cut(s) | 287 |
| GsuI | CTGGAG | 1 cut(s) | 138 |
| HhaI | GCGC | 1 cut(s) | 288 |
| Hin1II | CATG | 2 cut(s) | 79, 151 |
| Hin6I | GCGC | 1 cut(s) | 286 |
| HinP1I | GCGC | 1 cut(s) | 286 |
| HinfI | GANTC | 2 cut(s) | 137, 269 |
| Hpy188I | TCNGA | 1 cut(s) | 193 |
| HpyCH4III | ACNGT | 1 cut(s) | 181 |
| HpyCH4V | TGCA | 4 cut(s) | 50, 79, 245, 258 |
| HpyF3I | CTNAG | 2 cut(s) | 12, 218 |
| Hsp92II | CATG | 2 cut(s) | 79, 151 |
| HspAI | GCGC | 1 cut(s) | 286 |
| Kzo9I | GATC | 3 cut(s) | 71, 211, 232 |
| LmnI | GCTCC | 2 cut(s) | 13, 119 |
| LpnPI | CCDG | 5 cut(s) | 102, 117, 129, 150, 261 |
| LweI | GCATC | 3 cut(s) | 85, 163, 232 |
| MalI | GATC | 3 cut(s) | 73, 213, 234 |
| MboI | GATC | 3 cut(s) | 71, 211, 232 |
| MboII | GAAGA | 2 cut(s) | 194, 206 |
| MflI | RGATCY | 1 cut(s) | 71 |
| MluCI | AATT | 2 cut(s) | 123, 259 |
| MnlI | CCTC | 4 cut(s) | 21, 144, 161, 164 |
| MseI | TTAA | 2 cut(s) | 161, 237 |
| MspR9I | CCNGG | 1 cut(s) | 117 |
| MvaI | CCWGG | 1 cut(s) | 117 |
| MvnI | CGCG | 1 cut(s) | 210 |
| NdeII | GATC | 3 cut(s) | 71, 211, 232 |
| NlaIII | CATG | 2 cut(s) | 79, 151 |
| NlaIV | GGNNCC | 2 cut(s) | 9, 18 |
| NsbI | TGCGCA | 1 cut(s) | 287 |
| PaqCI | CACCTGC | 1 cut(s) | 256 |
| PfeI | GAWTC | 2 cut(s) | 137, 269 |
| PfoI | TCCNGGA | 1 cut(s) | 115 |
| Psp6I | CCWGG | 1 cut(s) | 115 |
| PspGI | CCWGG | 1 cut(s) | 115 |
| PspN4I | GGNNCC | 2 cut(s) | 9, 18 |
| PsuI | RGATCY | 1 cut(s) | 71 |
| SaqAI | TTAA | 2 cut(s) | 161, 237 |
| Sau3AI | GATC | 3 cut(s) | 71, 211, 232 |
| ScrFI | CCNGG | 1 cut(s) | 117 |
| SetI | ASST | 4 cut(s) | 18, 30, 250, 267 |
| SfaNI | GCATC | 3 cut(s) | 85, 163, 232 |
| Sse9I | AATT | 2 cut(s) | 123, 259 |
| SsiI | CCGC | 1 cut(s) | 208 |
| StyD4I | CCNGG | 1 cut(s) | 115 |
| TaaI | ACNGT | 1 cut(s) | 181 |
| TasI | AATT | 2 cut(s) | 123, 259 |
| TfiI | GAWTC | 2 cut(s) | 137, 269 |
| Tru1I | TTAA | 2 cut(s) | 161, 237 |
| Tru9I | TTAA | 2 cut(s) | 161, 237 |
| TspDTI | ATGAA | 1 cut(s) | 129 |