Rh6BG031400

Squalene monooxygenase-like

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6B
OG0000108
Physical Location & Seq
Forward (+)
4770329 .. 4773161
2833 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6BG031400.1

Sequence Viewer

Length: 1563 bp
ATGGATTACCTGTATACAACAGGAGCAGTCATAGCTTCATTGTTGAGTGTTGTTTTCTTATACACTTTTAGAGGGAAGAGGAAGAATGTCAAAGCTTCAATGAAGACTCAAAATGGGAAACTTTTGAAGAGCTCTGGAAATGGAATGTGTTTGCCGGCAAAGATTGGTGCAAGTCCTGACATTGTCATTGTTGGAGCTGGAGTTGTTGGTTCGGCACTCGCTTATACTCTTGGGAAGATGGACATTTCATTAAGGAATATTAAAGGGTATTGGATCTGTTTGGGGTTTCCAGATTTACTGAATTGTGATTGTGTGAATGAGATTGATGCTCAGAGAGTTTTTGGCTATGCGCTTTACAAGGATGGGAAAAGTTCCAAGCTGCCATATCCCTTGGAAAACTTCCATCCAGATGTGGCTGGCAGAAGCTTTCACCATGGCCGTTTCATTCAAAGGATGCGTGAAAAAGCTGCATCTCTTCCCAATGTAAGATTGGAACAAGGCACAGTGACATCTCTGCTTGAAGAACAGGGTACTGTCAAAGGGGTCCAATACAAATCCAAAGGCAGTGATCAGGAGCTCACCGCACACGCTCCCCTCACAATAGTCTGTGATGGTTGCTATTCAAACTTGCGACGCTCTCTCTGTGATGCGAAGGTTGATATTCCTTCATGTTTTGTTGGTTTAGTTCTTGAGAATTGCCAGCTACCATACGCAAATCATGGGCATGTGATATTAGCAGATCCTTCACCGATACTGTTTTATCCTATCAGCAGCACCGAGATTCGCTGCCTGGTTGATGTACCAGGCCAGAAAGTGCCTTCAATTTCCAGTGGTGATATGGCTCACTACTTGAAAACAAAAGTGGCACCCCAAGTTCCACTTGAGCTGCATGCCGCTTTCTTGGCTGCCATTGATAATGGAAACATAAAATCAATGCCGAACAGAAGCATGCCTGCTGCTCCTCATCCCACCCCTGGTGCCTTTCTAATGGGGGATGCAGTCAATATGCGCCATCCTTTAACTGGAGGAGGCATGACTGTGGCTCTATCGGACATTGTGGTTGTTAGGGATCTTCTAAGACCTCTGGACAATCTCAATGATGCATCAGCTCTTTGCAAATACCTCGAGTCATTCTATACTCTTCGTAAGCCTGTGTCTTCTACCATAAACACATTGGCAGGTGCTCTATACAAGGTGTTCTGTGCATCTCCTGATCCAGCAAGGAAAGAAATGAGGGAAGCATGCTTTGACTACTTGAGTCTTGGTGGCATGTTTTCCAATGGACCTCTGGCTCTTCTCTCTGGTCTAAATCCTCATCCATTGAGCTTGATTCTCCACTTCTTTGCCGTGGCTATCTACGCTGTTGGGCGGCTGTTACTTCCATTCCCTTCACCCAAACGCATGTGGATTGGAGCTAGATTGATTTTGGGTGCATCAGGGATCATTTTCCCGATAATCAGCGCTGAAGGAGTAAGACAAATGTTCTTCCCTGTAATGGTTCCATCCTATCACAGAGCTCCTCCTGTTAATTTACATGACTTTGATAACAAGGCAATCAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
ko00100 ko00909 ko01100 ko01110 ko01130 map00100 map00909 map01100 map01110 map01130
Pfam Domains
Protein Families
SE

Protein Analysis

520

Amino Acids

56.54

Weight (kDa)

9.08

Isoelectric Point (pI)

39.16

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
FAD_binding_3 PF01494 150 - 355 2.9e-09 FAD binding domain
SE PF08491 196 - 469 1.9e-118 Squalene epoxidase
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0000108)

Species Orthologous Gene IDs
arabidopsis_thaliana AT2G22830 AT4G37760
fragaria_vesca FvH4_1g18300 FvH4_1g20540 FvH4_2g02580 FvH4_2g02590 FvH4_2g02590 FvH4_2g02590 FvH4_2g02600 FvH4_2g02650 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02652 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_2g02660 FvH4_4g14040 FvH4_4g14050
malus_domestica MD00G1080800.v1.1 MD02G1190300.v1.1 MD02G1272900.v1.1 MD05G1111800.v1.1 MD05G1112000.v1.1 MD05G1112100.v1.1 MD05G1112200.v1.1 MD07G1041500.v1.1 MD07G1041600.v1.1 MD07G1041700.v1.1 MD07G1041800.v1.1 MD07G1041900.v1.1 MD07G1042000.v1.1 MD10G1114800.v1.1 MD15G1301500.v1.1
prunus_persica Prupe.6G216100_v2.0.a1 Prupe.8G156600_v2.0.a1 Prupe.8G156800_v2.0.a1
pyrus_communis pycom02g15440 pycom02g15450 pycom02g23370 pycom02g23380 pycom05g10720 pycom05g10730 pycom05g10770 pycom07g02910 pycom07g02920 pycom07g02930 pycom07g02940 pycom07g02950 pycom07g02960 pycom10g09930 pycom15g26420 pycom15g26430
rosa_chinensis RchiOBHm_Chr1g0337291 RchiOBHm_Chr1g0337301 RchiOBHm_Chr2g0108881 RchiOBHm_Chr2g0108891 RchiOBHm_Chr2g0108921 RchiOBHm_Chr4g0411471 RchiOBHm_Chr4g0411481 RchiOBHm_Chr4g0411491 RchiOBHm_Chr4g0419301 RchiOBHm_Chr4g0419311 RchiOBHm_Chr4g0419381 RchiOBHm_Chr4g0419391 RchiOBHm_Chr4g0419471 RchiOBHm_Chr4g0419611 RchiOBHm_Chr6g0246411 RchiOBHm_Chr6g0246421 RchiOBHm_Chr6g0246521 RchiOBHm_Chr6g0246791 RchiOBHm_Chr6g0246801 RchiOBHm_Chr6g0246811 RchiOBHm_Chr6g0246841 RchiOBHm_Chr6g0246851 RchiOBHm_Chr6g0246941 RchiOBHm_Chr6g0246951 RchiOBHm_Chr6g0246961 RchiOBHm_Chr6g0246981 RchiOBHm_Chr6g0246991 RchiOBHm_Chr6g0247001 RchiOBHm_Chr7g0177171 RchiOBHm_Chr7g0177181 RchiOBHm_Chr7g0177191
rosa_laevigata RLG00000007810 RLG00000007811 RLG00000007817 RLG00000008351 RLG00000008352 RLG00000008353 RLG00000013274 RLG00000014276 RLG00000015230 RLG00000015231 RLG00000015232 RLG00000015236 RLG00000015237 RLG00000015238 RLG00000015239 RLG00000015240 RLG00000015244 RLG00000015245 RLG00000015246 RLG00000015247 RLG00000017694 RLG00000029286
rosa_multiflora Rmu_co7985368.1_g000001 Rmu_co8117354.1_g000001 Rmu_co8129060.1_g000001 Rmu_co8143900.1_g000001 Rmu_co8230369.1_g000001 Rmu_co8341411.1_g000001 Rmu_co8365495.1_g000001 Rmu_co8367749.1_g000001 Rmu_co8422277.1_g000001 Rmu_sc0000455.1_g000001 Rmu_sc0000989.1_g000003 Rmu_sc0001293.1_g000004 Rmu_sc0001293.1_g000005 Rmu_sc0001293.1_g000006 Rmu_sc0001293.1_g000007 Rmu_sc0001982.1_g000018 Rmu_sc0001982.1_g000019 Rmu_sc0002539.1_g000051 Rmu_sc0003387.1_g000001 Rmu_sc0004469.1_g000022 Rmu_sc0004830.1_g000004 Rmu_sc0004932.1_g000010 Rmu_sc0005310.1_g000017 Rmu_sc0006222.1_g000001 Rmu_sc0006767.1_g000002 Rmu_sc0006875.1_g000001 Rmu_sc0009831.1_g000001 Rmu_sc0009831.1_g000002 Rmu_sc0009831.1_g000003 Rmu_sc0010547.1_g000017 Rmu_sc0012369.1_g000005 Rmu_sc0012369.1_g000006 Rmu_sc0017606.1_g000010 Rmu_sc0018495.1_g000001 Rmu_sc0018495.1_g000002 Rmu_sc0024638.1_g000002 Rmu_sc0031581.1_g000001 Rmu_sc0032897.1_g000005 Rmu_sc0037307.1_g000001 Rmu_sc0038108.1_g000001 Rmu_sc0041017.1_g000001
rosa_roxburghii Rroxscaffold_176G00431650 Rroxscaffold_2G00134690 Rroxscaffold_2G00134720 Rroxscaffold_4G00314560 Rroxscaffold_4G00326020 Rroxscaffold_5G00356060 Rroxscaffold_5G00356070 Rroxscaffold_5G00362290 Rroxscaffold_5G00362330 Rroxscaffold_5G00362340 Rroxscaffold_5G00362440 Rroxscaffold_5G00362450 Rroxscaffold_7G00203370 Rroxscaffold_7G00214390 Rroxscaffold_7G00214400 Rroxscaffold_7G00214410 Rroxscaffold_7G00214430 Rroxscaffold_7G00214440 Rroxscaffold_7G00214450 Rroxscaffold_7G00214460 Rroxscaffold_7G00214500
rosa_rugosa Rorug01G0134000.1 Rorug01G0134100.1 Rorug01G0134200.1 Rorug02G0156600 Rorug02G0156700 Rorug04G0108500 Rorug04G0108600 Rorug04G0158200 Rorug04G0158500 Rorug04G0158600 Rorug05G0521200 Rorug05G0521300 Rorug05G0521300 Rorug05G0521500 Rorug05G0521600 Rorug05G0521700 Rorug05G0521800 Rorug05G0521900 Rorug06G0011500
rosa_samantha Rh1AG153200 Rh1AG153300 Rh1CG060800 Rh1CG144100 Rh1CG144200 Rh1DG064800 Rh1DG160800 Rh1DG160900 Rh1DG161000 Rh2AG207100 Rh2AG207200 Rh2DG213300 Rh2DG213400 Rh4AG168400 Rh4AG168500 Rh4AG220000 Rh4CG179900 Rh4CG232800 Rh4DG162800 Rh4DG219200 Rh4DG219300 Rh6AG035000 Rh6AG035900 Rh6AG036000 Rh6AG036200 Rh6AG036300 Rh6AG036600 Rh6BG030600 Rh6BG030700 Rh6BG030800 Rh6BG031000 Rh6BG031300 Rh6BG031400 Rh6CG031200 Rh6CG031500 Rh6CG031600 Rh6CG031700 Rh6CG031800 Rh6CG031900 Rh6CG032000 Rh7AG003800
rosa_wichuraiana Rw1G012540 Rw1G012550 Rw2G016450 Rw4G013990 Rw4G014000 Rw4G018830 Rw4G018850 Rw4G018960 Rw4G018970 Rw6G002850 Rw6G003030 Rw6G003040 Rw6G003050 Rw6G003060 Rw6G003100 Rw6G003110 Rw6G003140 Rw6G003150 Rw7G000310

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 1169
Acc36I ACCTGC 1 cut(s) 1169
AccB1I GGYRCC 2 cut(s) 865, 977
AccI GTMKAC 1 cut(s) 14
AciI CCGC 3 cut(s) 582, 894, 1369
AclWI GGATC 5 cut(s) 281, 734, 1077, 1208, 1448
AcoI YGGCCR 1 cut(s) 436
AcuI CTGAAG 1 cut(s) 1485
AfaI GTAC 2 cut(s) 532, 801
AfeI AGCGCT 1 cut(s) 1462
AfiI CCNNNNNNNGG 3 cut(s) 974, 1022, 1495
AgsI TTSAA 7 cut(s) 99, 127, 449, 521, 624, 822, 853
AjnI CCWGG 3 cut(s) 789, 802, 973
Alw21I GWGCWC 4 cut(s) 134, 579, 1186, 1519
AlwI GGATC 5 cut(s) 281, 734, 1077, 1208, 1448
Ama87I CYCGRG 1 cut(s) 1124
Aor51HI AGCGCT 1 cut(s) 1462
AoxI GGCC 2 cut(s) 436, 805
ApeKI GCWGC 7 cut(s) 379, 467, 771, 786, 886, 905, 956
AspLEI GCGC 3 cut(s) 352, 1011, 1463
AspS9I GGNCC 2 cut(s) 544, 1283
AsuHPI GGTGA 5 cut(s) 422, 571, 738, 845, 1383
AvaI CYCGRG 1 cut(s) 1124
AvaII GGWCC 2 cut(s) 544, 1283
BanI GGYRCC 2 cut(s) 865, 977
BanII GRGCYC 3 cut(s) 134, 579, 1519
BbsI GAAGAC 2 cut(s) 110, 1149
Bbv12I GWGCWC 4 cut(s) 134, 579, 1186, 1519
BbvI GCAGC 7 cut(s) 366, 454, 773, 783, 873, 892, 943
BccI CCATC 6 cut(s) 232, 356, 411, 605, 1020, 1510
BceAI ACGGC 2 cut(s) 423, 1331
BcgI CGANNNNNNTGC 2 cut(s) 1105, 1139
BciT130I CCWGG 3 cut(s) 791, 804, 975
BclI TGATCA 1 cut(s) 568
BfaI CTAG 1 cut(s) 1416
BfoI RGCGCY 1 cut(s) 1464
BfuAI ACCTGC 1 cut(s) 1169
BisI GCNGC 9 cut(s) 380, 468, 772, 787, 887, 894, 906, 957, 1370
BlsI GCNGC 9 cut(s) 381, 469, 773, 788, 888, 895, 907, 958, 1371
Bme1390I CCNGG 3 cut(s) 791, 804, 975
Bme18I GGWCC 2 cut(s) 544, 1283
BmeT110I CYCGRG 1 cut(s) 1124
BmgT120I GGNCC 2 cut(s) 544, 1283
BmiI GGNNCC 4 cut(s) 545, 867, 979, 1500
BmrFI CCNGG 3 cut(s) 791, 804, 975
BmsI GCATC 9 cut(s) 316, 444, 479, 637, 985, 1090, 1112, 1214, 1442
BpiI GAAGAC 2 cut(s) 110, 1149
BpmI CTGGAG 2 cut(s) 219, 1044
BpuEI CTTGAG 3 cut(s) 710, 902, 1276
BsaJI CCNNGG 4 cut(s) 390, 433, 973, 1347
BsaXI ACNNNNNCTCC 2 cut(s) 186, 216
Bsc4I CCNNNNNNNGG 3 cut(s) 974, 1022, 1495
Bse118I RCCGGY 1 cut(s) 154
Bse1I ACTGG 2 cut(s) 828, 1027
BseBI CCWGG 3 cut(s) 791, 804, 975
BseDI CCNNGG 4 cut(s) 390, 433, 973, 1347
BseGI GGATG 8 cut(s) 367, 403, 459, 964, 1000, 1012, 1315, 1502
BseLI CCNNNNNNNGG 3 cut(s) 974, 1022, 1495
BseMII CTCAG 1 cut(s) 344
BseNI ACTGG 2 cut(s) 828, 1027
BseRI GAGGAG 3 cut(s) 951, 1041, 1509
BseXI GCAGC 7 cut(s) 366, 454, 773, 783, 873, 892, 943
BshFI GGCC 2 cut(s) 438, 807
BshNI GGYRCC 2 cut(s) 865, 977
BsiHKAI GWGCWC 4 cut(s) 134, 579, 1186, 1519
BsiHKCI CYCGRG 1 cut(s) 1124
BsiSI CCGG 1 cut(s) 155
BslI CCNNNNNNNGG 3 cut(s) 974, 1022, 1495
BsnI GGCC 2 cut(s) 438, 807
BsoBI CYCGRG 1 cut(s) 1124
Bsp1286I GDGCHC 4 cut(s) 134, 579, 1186, 1519
Bsp143I GATC 6 cut(s) 273, 568, 739, 1069, 1213, 1440
Bsp19I CCATGG 1 cut(s) 433
BspACI CCGC 3 cut(s) 582, 894, 1369
BspANI GGCC 2 cut(s) 438, 807
BspCNI CTCAG 1 cut(s) 343
BspLI GGNNCC 4 cut(s) 545, 867, 979, 1500
BspMI ACCTGC 1 cut(s) 1169
BspPI GGATC 5 cut(s) 281, 734, 1077, 1208, 1448
BspQI GCTCTTC 2 cut(s) 122, 1299
BspT107I GGYRCC 2 cut(s) 865, 977
BsrFI RCCGGY 1 cut(s) 154
BsrI ACTGG 2 cut(s) 828, 1027
BssAI RCCGGY 1 cut(s) 154
BssECI CCNNGG 4 cut(s) 390, 433, 973, 1347
BssMI GATC 6 cut(s) 273, 568, 739, 1069, 1213, 1440
BssNAI GTATAC 1 cut(s) 15
BssT1I CCWWGG 2 cut(s) 390, 433
Bst1107I GTATAC 1 cut(s) 15
Bst2UI CCWGG 3 cut(s) 791, 804, 975
Bst4CI ACNGT 4 cut(s) 505, 535, 756, 1039
Bst6I CTCTTC 5 cut(s) 71, 122, 480, 1146, 1299
BstC8I GCNNGC 7 cut(s) 156, 418, 701, 891, 950, 954, 1243
BstDEI CTNAG 2 cut(s) 330, 1076
BstDSI CCRYGG 2 cut(s) 433, 1347
BstF5I GGATG 8 cut(s) 367, 403, 459, 964, 1000, 1012, 1315, 1502
BstH2I RGCGCY 1 cut(s) 1464
BstHHI GCGC 3 cut(s) 352, 1011, 1463
BstKTI GATC 6 cut(s) 276, 571, 742, 1072, 1216, 1443
BstMBI GATC 6 cut(s) 273, 568, 739, 1069, 1213, 1440
BstMWI GCNNNNNNNGC 3 cut(s) 32, 902, 1358
BstNI CCWGG 3 cut(s) 791, 804, 975
BstNSI RCATGY 6 cut(s) 728, 893, 952, 1245, 1273, 1405
BstSCI CCNGG 3 cut(s) 789, 802, 973
BstV1I GCAGC 7 cut(s) 366, 454, 773, 783, 873, 892, 943
BstV2I GAAGAC 2 cut(s) 110, 1149
BstX2I RGATCY 3 cut(s) 273, 739, 1069
BstYI RGATCY 3 cut(s) 273, 739, 1069
BstZ17I GTATAC 1 cut(s) 15
BsuRI GGCC 2 cut(s) 438, 807
BtgI CCRYGG 2 cut(s) 433, 1347
BtsCI GGATG 8 cut(s) 367, 403, 459, 964, 1000, 1012, 1315, 1502
BtsI GCAGTG 1 cut(s) 571
BtsIMutI CAGTG 3 cut(s) 510, 571, 835
BveI ACCTGC 1 cut(s) 1169
Cac8I GCNNGC 7 cut(s) 156, 418, 701, 891, 950, 954, 1243
CfoI GCGC 3 cut(s) 352, 1011, 1463
Cfr10I RCCGGY 1 cut(s) 154
Cfr13I GGNCC 2 cut(s) 544, 1283
CseI GACGC 1 cut(s) 642
Csp6I GTAC 2 cut(s) 531, 800
CviQI GTAC 2 cut(s) 531, 800
DdeI CTNAG 2 cut(s) 330, 1076
DpnI GATC 6 cut(s) 275, 570, 741, 1071, 1215, 1442
DpnII GATC 6 cut(s) 273, 568, 739, 1069, 1213, 1440
EaeI YGGCCR 1 cut(s) 436
Eam1104I CTCTTC 5 cut(s) 71, 122, 480, 1146, 1299
EarI CTCTTC 5 cut(s) 71, 122, 480, 1146, 1299
Ecl136II GAGCTC 3 cut(s) 132, 577, 1517
Eco130I CCWWGG 2 cut(s) 390, 433
Eco24I GRGCYC 3 cut(s) 134, 579, 1519
Eco47I GGWCC 2 cut(s) 544, 1283
Eco47III AGCGCT 1 cut(s) 1462
Eco53kI GAGCTC 3 cut(s) 132, 577, 1517
Eco57I CTGAAG 1 cut(s) 1485
Eco88I CYCGRG 1 cut(s) 1124
EcoICRI GAGCTC 3 cut(s) 132, 577, 1517
EcoRII CCWGG 3 cut(s) 789, 802, 973
EcoT14I CCWWGG 2 cut(s) 390, 433
EcoT22I ATGCAT 1 cut(s) 1105
EcoT38I GRGCYC 3 cut(s) 134, 579, 1519
ErhI CCWWGG 2 cut(s) 390, 433
FalI AAGNNNNNCTT 2 cut(s) 864, 896
FbaI TGATCA 1 cut(s) 568
FblI GTMKAC 1 cut(s) 14
Fnu4HI GCNGC 9 cut(s) 380, 468, 772, 787, 887, 894, 906, 957, 1370
FokI GGATG 8 cut(s) 374, 390, 466, 951, 999, 1007, 1302, 1489
FriOI GRGCYC 3 cut(s) 134, 579, 1519
Fsp4HI GCNGC 9 cut(s) 380, 468, 772, 787, 887, 894, 906, 957, 1370
FspBI CTAG 1 cut(s) 1416
GlaI GCGC 3 cut(s) 351, 1010, 1462
GluI GCNGC 9 cut(s) 380, 468, 772, 787, 887, 894, 906, 957, 1370
GsuI CTGGAG 2 cut(s) 219, 1044
HaeII RGCGCY 1 cut(s) 1464
HaeIII GGCC 2 cut(s) 438, 807
HapII CCGG 1 cut(s) 155
HgaI GACGC 1 cut(s) 642
HhaI GCGC 3 cut(s) 352, 1011, 1463
Hin6I GCGC 3 cut(s) 350, 1009, 1461
HinP1I GCGC 3 cut(s) 350, 1009, 1461
HindIII AAGCTT 2 cut(s) 93, 424
HinfI GANTC 5 cut(s) 106, 781, 1127, 1258, 1330
HpaII CCGG 1 cut(s) 155
HphI GGTGA 5 cut(s) 422, 571, 738, 845, 1383
Hpy166II GTNNAC 1 cut(s) 15
Hpy188I TCNGA 3 cut(s) 333, 1051, 1559
Hpy188III TCNNGA 9 cut(s) 135, 176, 290, 407, 572, 689, 1085, 1211, 1450
Hpy8I GTNNAC 1 cut(s) 15
Hpy99I CGWCG 1 cut(s) 636
HpyAV CCTTC 6 cut(s) 646, 675, 753, 828, 1398, 1460
HpyCH4III ACNGT 4 cut(s) 505, 535, 756, 1039
HpyCH4V TGCA 8 cut(s) 170, 470, 889, 998, 1103, 1116, 1205, 1433
HpyF10VI GCNNNNNNNGC 3 cut(s) 32, 902, 1358
HpyF3I CTNAG 2 cut(s) 330, 1076
HspAI GCGC 3 cut(s) 350, 1009, 1461
KroI GCCGGC 1 cut(s) 154
KroNI GCCGGC 1 cut(s) 156
Ksp22I TGATCA 1 cut(s) 568
Kzo9I GATC 6 cut(s) 273, 568, 739, 1069, 1213, 1440
LguI GCTCTTC 2 cut(s) 122, 1299
LmnI GCTCC 7 cut(s) 23, 194, 574, 595, 964, 1412, 1522
Lsp1109I GCAGC 7 cut(s) 366, 454, 773, 783, 873, 892, 943
LweI GCATC 9 cut(s) 316, 444, 479, 637, 985, 1090, 1112, 1214, 1442
MaeI CTAG 1 cut(s) 1416
MaeIII GTNAC 2 cut(s) 505, 1374
MalI GATC 6 cut(s) 275, 570, 741, 1071, 1215, 1442
MboI GATC 6 cut(s) 273, 568, 739, 1069, 1213, 1440
MflI RGATCY 3 cut(s) 273, 739, 1069
MhlI GDGCHC 4 cut(s) 134, 579, 1186, 1519
MluCI AATT 4 cut(s) 301, 694, 822, 1528
MlyI GAGTC 3 cut(s) 100, 1136, 1267
MmeI TCCRAC 1 cut(s) 172
Mph1103I ATGCAT 1 cut(s) 1105
MroNI GCCGGC 1 cut(s) 154
MseI TTAA 4 cut(s) 251, 261, 1019, 1527
MslI CAYNNNNRTG 3 cut(s) 408, 723, 1037
MspI CCGG 1 cut(s) 155
MspR9I CCNGG 3 cut(s) 791, 804, 975
MvaI CCWGG 3 cut(s) 791, 804, 975
MwoI GCNNNNNNNGC 3 cut(s) 32, 902, 1358
NaeI GCCGGC 1 cut(s) 156
NcoI CCATGG 1 cut(s) 433
NdeII GATC 6 cut(s) 273, 568, 739, 1069, 1213, 1440
NgoMIV GCCGGC 1 cut(s) 154
NlaIV GGNNCC 4 cut(s) 545, 867, 979, 1500
NmuCI GTSAC 1 cut(s) 505
NsiI ATGCAT 1 cut(s) 1105
NspI RCATGY 6 cut(s) 728, 893, 952, 1245, 1273, 1405
PaeI GCATGC 3 cut(s) 893, 952, 1245
PaeR7I CTCGAG 1 cut(s) 1124
PaqCI CACCTGC 1 cut(s) 1169
PciSI GCTCTTC 2 cut(s) 122, 1299
PdiI GCCGGC 1 cut(s) 156
PfeI GAWTC 2 cut(s) 781, 1330
PflFI GACNNNGTC 1 cut(s) 182
PkrI GCNGC 9 cut(s) 381, 469, 773, 788, 888, 895, 907, 958, 1371
PleI GAGTC 3 cut(s) 100, 1135, 1266
PpsI GAGTC 3 cut(s) 100, 1135, 1266
Psp124BI GAGCTC 3 cut(s) 134, 579, 1519
Psp6I CCWGG 3 cut(s) 789, 802, 973
PspGI CCWGG 3 cut(s) 789, 802, 973
PspN4I GGNNCC 4 cut(s) 545, 867, 979, 1500
PspPI GGNCC 2 cut(s) 544, 1283
PspXI VCTCGAGB 1 cut(s) 1124
PsuI RGATCY 3 cut(s) 273, 739, 1069
PsyI GACNNNGTC 1 cut(s) 182
RsaI GTAC 2 cut(s) 532, 801
RsaNI GTAC 2 cut(s) 531, 800
RseI CAYNNNNRTG 3 cut(s) 408, 723, 1037
SacI GAGCTC 3 cut(s) 134, 579, 1519
SapI GCTCTTC 2 cut(s) 122, 1299
SaqAI TTAA 4 cut(s) 251, 261, 1019, 1527
SatI GCNGC 9 cut(s) 380, 468, 772, 787, 887, 894, 906, 957, 1370
Sau3AI GATC 6 cut(s) 273, 568, 739, 1069, 1213, 1440
Sau96I GGNCC 2 cut(s) 544, 1283
SchI GAGTC 3 cut(s) 100, 1136, 1267
ScrFI CCNGG 3 cut(s) 791, 804, 975
SduI GDGCHC 4 cut(s) 134, 579, 1186, 1519
SfaNI GCATC 9 cut(s) 316, 444, 479, 637, 985, 1090, 1112, 1214, 1442
Sfr274I CTCGAG 1 cut(s) 1124
SinI GGWCC 2 cut(s) 544, 1283
SlaI CTCGAG 1 cut(s) 1124
SmiMI CAYNNNNRTG 3 cut(s) 408, 723, 1037
SmlI CTYRAG 4 cut(s) 689, 881, 1124, 1255
SmoI CTYRAG 4 cut(s) 689, 881, 1124, 1255
SphI GCATGC 3 cut(s) 893, 952, 1245
Sse9I AATT 4 cut(s) 301, 694, 822, 1528
SsiI CCGC 3 cut(s) 582, 894, 1369
SspI AATATT 1 cut(s) 259
SspMI CTAG 1 cut(s) 1416
SstI GAGCTC 3 cut(s) 134, 579, 1519
StyD4I CCNGG 3 cut(s) 789, 802, 973
StyI CCWWGG 2 cut(s) 390, 433
TaaI ACNGT 4 cut(s) 505, 535, 756, 1039
TaqI TCGA 1 cut(s) 1125
TasI AATT 4 cut(s) 301, 694, 822, 1528
TauI GCSGC 2 cut(s) 896, 1372
TfiI GAWTC 2 cut(s) 781, 1330
Tru1I TTAA 4 cut(s) 251, 261, 1019, 1527
Tru9I TTAA 4 cut(s) 251, 261, 1019, 1527
TscAI CASTG 3 cut(s) 510, 571, 835
TseFI GTSAC 1 cut(s) 505
TseI GCWGC 7 cut(s) 379, 467, 771, 786, 886, 905, 956
Tsp45I GTSAC 1 cut(s) 505
TspDTI ATGAA 5 cut(s) 27, 116, 237, 433, 657
TspRI CASTG 3 cut(s) 510, 571, 835
Tth111I GACNNNGTC 1 cut(s) 182
VpaK11BI GGWCC 2 cut(s) 544, 1283
XceI RCATGY 6 cut(s) 728, 893, 952, 1245, 1273, 1405
XcmI CCANNNNNNNNNTGG 5 cut(s) 487, 835, 1019, 1171, 1285
XhoI CTCGAG 1 cut(s) 1124
XmiI GTMKAC 1 cut(s) 14
XspI CTAG 1 cut(s) 1416
Zsp2I ATGCAT 1 cut(s) 1105
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.